Ggra3445.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3445.t1
Unique NameGgra3445.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:144186..145106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128421.JAGA01000002_gene351
Preferred namepanC
PFAMsPantoate_ligase
Max annot lvl2|Bacteria
KEGG rclassRC00096,RC00141
KEGG koko:K01918
KEGG ReactionR02473
KEGG Pathwayko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110
KEGG ModuleM00119
GOsGO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605
Evalue2.43e-68
EggNOG OGsCOG0414@1|root,COG0414@2|Bacteria,2NP0J@2323|unclassified Bacteria
EC6.3.2.1
DescriptionCatalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3445Ggra3445Gracilaria gracilis GNS1m malegenetig00000059_pilon 144186..145106 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3445.t1.start1Ggra3445.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 144186..144188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3445.t1.CDS1Ggra3445.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 144186..145106 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3445.t1.exon1Ggra3445.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 144186..145106 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3445.t1.stop1Ggra3445.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 145104..145106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3445.t1Ggra3445.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 144186..145106 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3445.t1 ID=Ggra3445.t1|Name=Ggra3445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=307bp
MSESHGDTKAGADLSNQQIMTIRKAKDLISHLNSLPNACSLGIVMTMGAL
HEGHAALVRQCASENDITLVTLFLNPLQFAAHEDLSTYPRTEERDKGLFK
EWGADILFAPQVEEVYPPSFDTHVICAAGNPERNESSEGAFRPTFFRGVA
TVVAKTLSLTRADRCYFGLKDAQQCAVVKRIVEDLWLRCEVRLVDTQREK
DGLAMSSRNAYLSKEERNEANTLWKALLVGKKLWDSGERDVQTLRQAVKM
EIGKHPKLQLMYVSICDRWTMREMNGELPHEQGALLLCVAAMLGRARLID
NTVLAD*
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spliced messenger RNA

>Ggra3445.t1 ID=Ggra3445.t1|Name=Ggra3445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000059_pilon:144186..145106+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAAAGTCACGGCGATACGAAAGCTGGCGCTGATTTGAGCAATCA
GCAGATCATGACTATTCGAAAGGCAAAAGACTTGATTTCTCACTTAAATT
CACTACCAAATGCATGTAGCCTGGGAATCGTTATGACCATGGGCGCCCTT
CATGAAGGACATGCAGCCTTGGTAAGGCAATGTGCATCCGAGAATGACAT
AACCTTGGTTACTTTATTTCTGAACCCCTTGCAGTTTGCTGCTCATGAGG
ACTTGTCCACATACCCAAGAACTGAAGAGCGTGATAAAGGACTATTCAAG
GAATGGGGTGCGGATATACTATTTGCACCACAAGTTGAAGAAGTGTACCC
CCCATCGTTTGATACCCACGTAATCTGCGCCGCTGGCAATCCAGAGAGGA
ACGAGTCTAGCGAGGGAGCTTTCCGTCCCACATTCTTTCGCGGAGTGGCC
ACCGTTGTGGCCAAAACCTTGTCTTTAACCAGAGCAGATAGGTGTTACTT
TGGCCTGAAAGATGCGCAGCAATGCGCTGTCGTAAAGCGCATTGTAGAAG
ACCTGTGGCTCAGATGCGAGGTAAGACTCGTGGATACCCAAAGAGAGAAA
GACGGACTAGCAATGTCATCAAGAAACGCGTATCTCAGCAAAGAGGAGCG
AAATGAAGCAAACACGCTGTGGAAAGCATTACTTGTCGGTAAAAAGTTAT
GGGATTCTGGAGAACGAGACGTTCAAACTTTGCGGCAGGCTGTAAAGATG
GAAATAGGGAAGCACCCCAAACTACAGTTGATGTATGTAAGCATCTGCGA
CCGATGGACGATGCGAGAAATGAATGGTGAACTGCCTCATGAGCAGGGTG
CGCTGCTACTCTGCGTTGCAGCCATGCTTGGTCGAGCCCGCCTCATAGAC
AATACTGTCCTTGCAGACTGA
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protein sequence of Ggra3445.t1

>Ggra3445.t1 ID=Ggra3445.t1|Name=Ggra3445.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=307bp
MSESHGDTKAGADLSNQQIMTIRKAKDLISHLNSLPNACSLGIVMTMGAL
HEGHAALVRQCASENDITLVTLFLNPLQFAAHEDLSTYPRTEERDKGLFK
EWGADILFAPQVEEVYPPSFDTHVICAAGNPERNESSEGAFRPTFFRGVA
TVVAKTLSLTRADRCYFGLKDAQQCAVVKRIVEDLWLRCEVRLVDTQREK
DGLAMSSRNAYLSKEERNEANTLWKALLVGKKLWDSGERDVQTLRQAVKM
EIGKHPKLQLMYVSICDRWTMREMNGELPHEQGALLLCVAAMLGRARLID
NTVLAD*
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mRNA from alignment at tig00000059_pilon:144186..145106+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3445.t1 ID=Ggra3445.t1|Name=Ggra3445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000059_pilon:144186..145106+ (Gracilaria gracilis GNS1m male)
ATGAGCGAAAGTCACGGCGATACGAAAGCTGGCGCTGATTTGAGCAATCA
GCAGATCATGACTATTCGAAAGGCAAAAGACTTGATTTCTCACTTAAATT
CACTACCAAATGCATGTAGCCTGGGAATCGTTATGACCATGGGCGCCCTT
CATGAAGGACATGCAGCCTTGGTAAGGCAATGTGCATCCGAGAATGACAT
AACCTTGGTTACTTTATTTCTGAACCCCTTGCAGTTTGCTGCTCATGAGG
ACTTGTCCACATACCCAAGAACTGAAGAGCGTGATAAAGGACTATTCAAG
GAATGGGGTGCGGATATACTATTTGCACCACAAGTTGAAGAAGTGTACCC
CCCATCGTTTGATACCCACGTAATCTGCGCCGCTGGCAATCCAGAGAGGA
ACGAGTCTAGCGAGGGAGCTTTCCGTCCCACATTCTTTCGCGGAGTGGCC
ACCGTTGTGGCCAAAACCTTGTCTTTAACCAGAGCAGATAGGTGTTACTT
TGGCCTGAAAGATGCGCAGCAATGCGCTGTCGTAAAGCGCATTGTAGAAG
ACCTGTGGCTCAGATGCGAGGTAAGACTCGTGGATACCCAAAGAGAGAAA
GACGGACTAGCAATGTCATCAAGAAACGCGTATCTCAGCAAAGAGGAGCG
AAATGAAGCAAACACGCTGTGGAAAGCATTACTTGTCGGTAAAAAGTTAT
GGGATTCTGGAGAACGAGACGTTCAAACTTTGCGGCAGGCTGTAAAGATG
GAAATAGGGAAGCACCCCAAACTACAGTTGATGTATGTAAGCATCTGCGA
CCGATGGACGATGCGAGAAATGAATGGTGAACTGCCTCATGAGCAGGGTG
CGCTGCTACTCTGCGTTGCAGCCATGCTTGGTCGAGCCCGCCTCATAGAC
AATACTGTCCTTGCAGACTGA
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Coding sequence (CDS) from alignment at tig00000059_pilon:144186..145106+

>Ggra3445.t1 ID=Ggra3445.t1|Name=Ggra3445.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00000059_pilon:144186..145106+ (Gracilaria gracilis GNS1m male)
ATGAGCGAAAGTCACGGCGATACGAAAGCTGGCGCTGATTTGAGCAATCA
GCAGATCATGACTATTCGAAAGGCAAAAGACTTGATTTCTCACTTAAATT
CACTACCAAATGCATGTAGCCTGGGAATCGTTATGACCATGGGCGCCCTT
CATGAAGGACATGCAGCCTTGGTAAGGCAATGTGCATCCGAGAATGACAT
AACCTTGGTTACTTTATTTCTGAACCCCTTGCAGTTTGCTGCTCATGAGG
ACTTGTCCACATACCCAAGAACTGAAGAGCGTGATAAAGGACTATTCAAG
GAATGGGGTGCGGATATACTATTTGCACCACAAGTTGAAGAAGTGTACCC
CCCATCGTTTGATACCCACGTAATCTGCGCCGCTGGCAATCCAGAGAGGA
ACGAGTCTAGCGAGGGAGCTTTCCGTCCCACATTCTTTCGCGGAGTGGCC
ACCGTTGTGGCCAAAACCTTGTCTTTAACCAGAGCAGATAGGTGTTACTT
TGGCCTGAAAGATGCGCAGCAATGCGCTGTCGTAAAGCGCATTGTAGAAG
ACCTGTGGCTCAGATGCGAGGTAAGACTCGTGGATACCCAAAGAGAGAAA
GACGGACTAGCAATGTCATCAAGAAACGCGTATCTCAGCAAAGAGGAGCG
AAATGAAGCAAACACGCTGTGGAAAGCATTACTTGTCGGTAAAAAGTTAT
GGGATTCTGGAGAACGAGACGTTCAAACTTTGCGGCAGGCTGTAAAGATG
GAAATAGGGAAGCACCCCAAACTACAGTTGATGTATGTAAGCATCTGCGA
CCGATGGACGATGCGAGAAATGAATGGTGAACTGCCTCATGAGCAGGGTG
CGCTGCTACTCTGCGTTGCAGCCATGCTTGGTCGAGCCCGCCTCATAGAC
AATACTGTCCTTGCAGACTGA
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