Ggra3421.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3421.t1
Unique NameGgra3421.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length349
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:276197..277243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72658.Bostr.2983s0027.1.p
PFAMsA_deaminase
Max annot lvl35493|Streptophyta
KEGG rclassRC00477
KEGG koko:K01488
KEGG ReactionR01560,R02556
KEGG Pathwayko00230,ko01100,ko05340,map00230,map01100,map05340
GOsGO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006152,GO:0006154,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009164,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042451,GO:0042454,GO:0042455,GO:0042737,GO:0043094,GO:0043101,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046085,GO:0046102,GO:0046103,GO:0046128,GO:0046129,GO:0046130,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659
Evalue1.99e-64
EggNOG OGsCOG1816@1|root,KOG1097@2759|Eukaryota,37S4S@33090|Viridiplantae,3GCH5@35493|Streptophyta,3HQDB@3699|Brassicales
EC3.5.4.4
DescriptionAdenosine AMP deaminase family protein
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3421Ggra3421Gracilaria gracilis GNS1m malegenetig00000905_pilon 276197..277243 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3421.t1.start1Ggra3421.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 276197..276199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3421.t1.CDS1Ggra3421.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 276197..277243 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3421.t1.exon1Ggra3421.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 276197..277243 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3421.t1.stop1Ggra3421.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 277241..277243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3421.t1Ggra3421.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 276197..277243 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3421.t1 ID=Ggra3421.t1|Name=Ggra3421.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=349bp
MTSSVLRREAMIERMPKVELHAHLSGSIRERTIRRLLQNPKHQTVRREAM
ELMEGQISLEKGFRLFPIIQQLVSDSETLNIVLQEVLEDFAEENTIYIEL
RTTPRVLPTMSAEEYLLTILRGIADYHTTHQGGMICRLLVSICRHQPVQT
SQDTLELTRRVIDEYKDLGDLIVGFDFSGDPNRGIWNEFEPVLQDIRREF
GLPITLHFGEVSNDDECMRMLDFGPDRIGHAAIVSDKVMRRLLCYRPPLG
VEVCLTSNMMTTSISGIDHHPVLRDLLPNKHPFCLCTDDAGVFRTSLSQE
YRHLLSVFPMKMEETTELALRGLDMVFCKDEKVMSIVRKNARDLLDQL*
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spliced messenger RNA

>Ggra3421.t1 ID=Ggra3421.t1|Name=Ggra3421.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000905_pilon:276197..277243+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCTTCTGTATTGCGGCGCGAGGCAATGATTGAGCGAATGCCGAA
GGTAGAGCTACACGCCCATCTGAGTGGTTCCATTCGCGAGAGAACTATAA
GGAGGCTTCTGCAAAACCCCAAACATCAAACAGTTCGACGTGAAGCGATG
GAGCTGATGGAAGGCCAAATCAGTTTAGAAAAGGGTTTCCGGTTGTTTCC
TATCATTCAACAGCTTGTTTCTGACTCCGAGACCTTGAACATCGTTCTCC
AAGAGGTCCTGGAAGATTTTGCCGAGGAAAACACTATATACATTGAACTT
CGAACCACGCCACGAGTTCTCCCAACAATGTCAGCCGAGGAATACTTACT
TACTATTCTTCGAGGAATAGCAGACTACCATACTACCCATCAAGGAGGAA
TGATTTGTCGGCTTCTGGTGTCGATATGCCGACATCAACCGGTACAAACC
TCGCAGGATACGCTCGAACTGACGAGGAGGGTAATTGACGAGTACAAAGA
TCTCGGCGACCTTATTGTAGGTTTTGACTTCAGTGGAGATCCCAACAGGG
GCATCTGGAATGAATTCGAACCGGTTTTGCAAGACATCAGGAGAGAATTT
GGATTGCCAATAACTCTGCACTTTGGCGAAGTCTCGAACGACGATGAATG
TATGAGGATGTTGGACTTTGGACCAGACCGTATTGGTCACGCAGCAATAG
TATCAGACAAAGTGATGCGCAGGCTGCTATGTTATCGACCCCCGCTTGGA
GTTGAGGTTTGTTTGACCTCAAACATGATGACGACTAGTATTTCTGGTAT
TGATCATCATCCTGTGCTTAGGGATCTCTTGCCCAACAAACACCCTTTCT
GCCTTTGCACAGATGACGCTGGGGTTTTTCGGACCTCATTATCACAAGAA
TACAGGCATCTCTTGAGTGTTTTTCCCATGAAAATGGAGGAAACTACGGA
ACTGGCGCTTCGCGGGCTGGACATGGTCTTTTGCAAGGACGAGAAGGTAA
TGAGCATAGTGAGAAAGAACGCACGGGATTTACTGGATCAACTCTAG
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protein sequence of Ggra3421.t1

>Ggra3421.t1 ID=Ggra3421.t1|Name=Ggra3421.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=349bp
MTSSVLRREAMIERMPKVELHAHLSGSIRERTIRRLLQNPKHQTVRREAM
ELMEGQISLEKGFRLFPIIQQLVSDSETLNIVLQEVLEDFAEENTIYIEL
RTTPRVLPTMSAEEYLLTILRGIADYHTTHQGGMICRLLVSICRHQPVQT
SQDTLELTRRVIDEYKDLGDLIVGFDFSGDPNRGIWNEFEPVLQDIRREF
GLPITLHFGEVSNDDECMRMLDFGPDRIGHAAIVSDKVMRRLLCYRPPLG
VEVCLTSNMMTTSISGIDHHPVLRDLLPNKHPFCLCTDDAGVFRTSLSQE
YRHLLSVFPMKMEETTELALRGLDMVFCKDEKVMSIVRKNARDLLDQL*
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mRNA from alignment at tig00000905_pilon:276197..277243+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3421.t1 ID=Ggra3421.t1|Name=Ggra3421.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000905_pilon:276197..277243+ (Gracilaria gracilis GNS1m male)
ATGACTTCTTCTGTATTGCGGCGCGAGGCAATGATTGAGCGAATGCCGAA
GGTAGAGCTACACGCCCATCTGAGTGGTTCCATTCGCGAGAGAACTATAA
GGAGGCTTCTGCAAAACCCCAAACATCAAACAGTTCGACGTGAAGCGATG
GAGCTGATGGAAGGCCAAATCAGTTTAGAAAAGGGTTTCCGGTTGTTTCC
TATCATTCAACAGCTTGTTTCTGACTCCGAGACCTTGAACATCGTTCTCC
AAGAGGTCCTGGAAGATTTTGCCGAGGAAAACACTATATACATTGAACTT
CGAACCACGCCACGAGTTCTCCCAACAATGTCAGCCGAGGAATACTTACT
TACTATTCTTCGAGGAATAGCAGACTACCATACTACCCATCAAGGAGGAA
TGATTTGTCGGCTTCTGGTGTCGATATGCCGACATCAACCGGTACAAACC
TCGCAGGATACGCTCGAACTGACGAGGAGGGTAATTGACGAGTACAAAGA
TCTCGGCGACCTTATTGTAGGTTTTGACTTCAGTGGAGATCCCAACAGGG
GCATCTGGAATGAATTCGAACCGGTTTTGCAAGACATCAGGAGAGAATTT
GGATTGCCAATAACTCTGCACTTTGGCGAAGTCTCGAACGACGATGAATG
TATGAGGATGTTGGACTTTGGACCAGACCGTATTGGTCACGCAGCAATAG
TATCAGACAAAGTGATGCGCAGGCTGCTATGTTATCGACCCCCGCTTGGA
GTTGAGGTTTGTTTGACCTCAAACATGATGACGACTAGTATTTCTGGTAT
TGATCATCATCCTGTGCTTAGGGATCTCTTGCCCAACAAACACCCTTTCT
GCCTTTGCACAGATGACGCTGGGGTTTTTCGGACCTCATTATCACAAGAA
TACAGGCATCTCTTGAGTGTTTTTCCCATGAAAATGGAGGAAACTACGGA
ACTGGCGCTTCGCGGGCTGGACATGGTCTTTTGCAAGGACGAGAAGGTAA
TGAGCATAGTGAGAAAGAACGCACGGGATTTACTGGATCAACTCTAG
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Coding sequence (CDS) from alignment at tig00000905_pilon:276197..277243+

>Ggra3421.t1 ID=Ggra3421.t1|Name=Ggra3421.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1047bp|location=Sequence derived from alignment at tig00000905_pilon:276197..277243+ (Gracilaria gracilis GNS1m male)
ATGACTTCTTCTGTATTGCGGCGCGAGGCAATGATTGAGCGAATGCCGAA
GGTAGAGCTACACGCCCATCTGAGTGGTTCCATTCGCGAGAGAACTATAA
GGAGGCTTCTGCAAAACCCCAAACATCAAACAGTTCGACGTGAAGCGATG
GAGCTGATGGAAGGCCAAATCAGTTTAGAAAAGGGTTTCCGGTTGTTTCC
TATCATTCAACAGCTTGTTTCTGACTCCGAGACCTTGAACATCGTTCTCC
AAGAGGTCCTGGAAGATTTTGCCGAGGAAAACACTATATACATTGAACTT
CGAACCACGCCACGAGTTCTCCCAACAATGTCAGCCGAGGAATACTTACT
TACTATTCTTCGAGGAATAGCAGACTACCATACTACCCATCAAGGAGGAA
TGATTTGTCGGCTTCTGGTGTCGATATGCCGACATCAACCGGTACAAACC
TCGCAGGATACGCTCGAACTGACGAGGAGGGTAATTGACGAGTACAAAGA
TCTCGGCGACCTTATTGTAGGTTTTGACTTCAGTGGAGATCCCAACAGGG
GCATCTGGAATGAATTCGAACCGGTTTTGCAAGACATCAGGAGAGAATTT
GGATTGCCAATAACTCTGCACTTTGGCGAAGTCTCGAACGACGATGAATG
TATGAGGATGTTGGACTTTGGACCAGACCGTATTGGTCACGCAGCAATAG
TATCAGACAAAGTGATGCGCAGGCTGCTATGTTATCGACCCCCGCTTGGA
GTTGAGGTTTGTTTGACCTCAAACATGATGACGACTAGTATTTCTGGTAT
TGATCATCATCCTGTGCTTAGGGATCTCTTGCCCAACAAACACCCTTTCT
GCCTTTGCACAGATGACGCTGGGGTTTTTCGGACCTCATTATCACAAGAA
TACAGGCATCTCTTGAGTGTTTTTCCCATGAAAATGGAGGAAACTACGGA
ACTGGCGCTTCGCGGGCTGGACATGGTCTTTTGCAAGGACGAGAAGGTAA
TGAGCATAGTGAGAAAGAACGCACGGGATTTACTGGATCAACTCTAG
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