Ggra3420.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3420.t1
Unique NameGgra3420.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:274474..275523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1499498.EV05_0050
PFAMsadh_short
Max annot lvl1117|Cyanobacteria
KEGG rclassRC01008
KEGG koko:K00218
KEGG ReactionR03845,R06286
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Evalue1.37e-36
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1G1UE@1117|Cyanobacteria,1MPKH@1212|Prochloraceae
EC1.3.1.33
DescriptionBelongs to the short-chain dehydrogenases reductases (SDR) family
COG categoryIQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3420Ggra3420Gracilaria gracilis GNS1m malegenetig00000905_pilon 274474..275523 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3420.t1.start1Ggra3420.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 274474..274476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3420.t1.CDS1Ggra3420.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 274474..275523 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3420.t1.exon1Ggra3420.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 274474..275523 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3420.t1.stop1Ggra3420.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 275521..275523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3420.t1Ggra3420.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 274474..275523 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3420.t1 ID=Ggra3420.t1|Name=Ggra3420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp
MSTSRPAFISAMPLTITRTSHYVSRKLDARMSLLNPARTAVITGASGGIG
AATAQALVKTLPTIEHLILAARNIDKAEAVAEPLREGISSRPVKVTVLPV
ELSSLQSVRECSEQVSGVLNEQPLDLLINNAGIMACPLLYSQMEGELGRV
ELQFATNHLSHAYLTTSLLPLLEKSDHGRAIFVSSLAVRLASKRTTAPLV
GERIENVLRDGSYEKWRMYGESKLAMSMFARELSKRTKVVCVSLHPGIVQ
TELARYLLPKFMQISPRSAPGKLLEALSRKVFGLLTPEEGAELSIELSQK
PEEDLEDGMMYLKTGLVKFQQRDLPILWNDNECERLYDDTMGFISSVQK*
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spliced messenger RNA

>Ggra3420.t1 ID=Ggra3420.t1|Name=Ggra3420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000905_pilon:274474..275523+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACTTCAAGGCCTGCATTCATTTCGGCTATGCCCCTTACAATCAC
TCGAACATCGCACTACGTTTCCCGCAAACTGGATGCACGAATGTCTTTGC
TAAATCCCGCGCGCACCGCCGTCATTACCGGGGCGTCGGGTGGTATTGGT
GCGGCCACAGCACAGGCGCTTGTGAAGACGCTTCCAACTATAGAACATCT
GATTTTAGCTGCCCGAAACATCGACAAAGCCGAGGCAGTGGCAGAGCCCC
TTCGGGAAGGTATTTCATCCAGACCAGTGAAAGTCACTGTTCTTCCTGTA
GAGCTTTCTAGTCTGCAAAGCGTGCGGGAATGCTCAGAACAAGTTTCGGG
CGTTCTGAACGAGCAGCCGCTCGATTTGCTTATCAACAACGCAGGTATAA
TGGCCTGCCCACTGCTGTACTCACAGATGGAAGGTGAACTGGGACGGGTT
GAACTGCAATTCGCCACAAATCACTTGTCCCATGCTTACCTCACGACCTC
TCTGCTACCGCTTCTCGAAAAGAGCGATCACGGTAGAGCCATTTTTGTTT
CGTCCTTGGCCGTGCGCTTGGCATCGAAACGCACTACAGCCCCGCTAGTT
GGGGAACGAATTGAAAACGTTTTGCGGGACGGAAGTTACGAAAAATGGAG
GATGTACGGCGAATCCAAGTTAGCCATGTCGATGTTCGCACGCGAGCTTT
CGAAAAGGACCAAGGTTGTGTGCGTCAGTCTTCATCCTGGAATCGTGCAA
ACCGAACTTGCAAGATACCTACTGCCAAAGTTCATGCAGATTTCTCCTAG
GAGTGCTCCGGGAAAGCTTCTGGAGGCGTTGTCCAGAAAGGTGTTTGGAC
TCCTGACACCTGAAGAAGGCGCTGAGCTTTCTATTGAATTGAGTCAGAAG
CCAGAAGAAGATCTTGAAGATGGTATGATGTACCTTAAGACAGGGCTCGT
TAAGTTCCAACAACGCGATCTACCGATATTGTGGAACGACAATGAATGTG
AGCGCTTGTACGACGACACCATGGGGTTTATCAGTTCCGTACAAAAGTGA
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protein sequence of Ggra3420.t1

>Ggra3420.t1 ID=Ggra3420.t1|Name=Ggra3420.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=350bp
MSTSRPAFISAMPLTITRTSHYVSRKLDARMSLLNPARTAVITGASGGIG
AATAQALVKTLPTIEHLILAARNIDKAEAVAEPLREGISSRPVKVTVLPV
ELSSLQSVRECSEQVSGVLNEQPLDLLINNAGIMACPLLYSQMEGELGRV
ELQFATNHLSHAYLTTSLLPLLEKSDHGRAIFVSSLAVRLASKRTTAPLV
GERIENVLRDGSYEKWRMYGESKLAMSMFARELSKRTKVVCVSLHPGIVQ
TELARYLLPKFMQISPRSAPGKLLEALSRKVFGLLTPEEGAELSIELSQK
PEEDLEDGMMYLKTGLVKFQQRDLPILWNDNECERLYDDTMGFISSVQK*
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mRNA from alignment at tig00000905_pilon:274474..275523+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3420.t1 ID=Ggra3420.t1|Name=Ggra3420.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000905_pilon:274474..275523+ (Gracilaria gracilis GNS1m male)
ATGTCAACTTCAAGGCCTGCATTCATTTCGGCTATGCCCCTTACAATCAC
TCGAACATCGCACTACGTTTCCCGCAAACTGGATGCACGAATGTCTTTGC
TAAATCCCGCGCGCACCGCCGTCATTACCGGGGCGTCGGGTGGTATTGGT
GCGGCCACAGCACAGGCGCTTGTGAAGACGCTTCCAACTATAGAACATCT
GATTTTAGCTGCCCGAAACATCGACAAAGCCGAGGCAGTGGCAGAGCCCC
TTCGGGAAGGTATTTCATCCAGACCAGTGAAAGTCACTGTTCTTCCTGTA
GAGCTTTCTAGTCTGCAAAGCGTGCGGGAATGCTCAGAACAAGTTTCGGG
CGTTCTGAACGAGCAGCCGCTCGATTTGCTTATCAACAACGCAGGTATAA
TGGCCTGCCCACTGCTGTACTCACAGATGGAAGGTGAACTGGGACGGGTT
GAACTGCAATTCGCCACAAATCACTTGTCCCATGCTTACCTCACGACCTC
TCTGCTACCGCTTCTCGAAAAGAGCGATCACGGTAGAGCCATTTTTGTTT
CGTCCTTGGCCGTGCGCTTGGCATCGAAACGCACTACAGCCCCGCTAGTT
GGGGAACGAATTGAAAACGTTTTGCGGGACGGAAGTTACGAAAAATGGAG
GATGTACGGCGAATCCAAGTTAGCCATGTCGATGTTCGCACGCGAGCTTT
CGAAAAGGACCAAGGTTGTGTGCGTCAGTCTTCATCCTGGAATCGTGCAA
ACCGAACTTGCAAGATACCTACTGCCAAAGTTCATGCAGATTTCTCCTAG
GAGTGCTCCGGGAAAGCTTCTGGAGGCGTTGTCCAGAAAGGTGTTTGGAC
TCCTGACACCTGAAGAAGGCGCTGAGCTTTCTATTGAATTGAGTCAGAAG
CCAGAAGAAGATCTTGAAGATGGTATGATGTACCTTAAGACAGGGCTCGT
TAAGTTCCAACAACGCGATCTACCGATATTGTGGAACGACAATGAATGTG
AGCGCTTGTACGACGACACCATGGGGTTTATCAGTTCCGTACAAAAGTGA
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Coding sequence (CDS) from alignment at tig00000905_pilon:274474..275523+

>Ggra3420.t1 ID=Ggra3420.t1|Name=Ggra3420.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00000905_pilon:274474..275523+ (Gracilaria gracilis GNS1m male)
ATGTCAACTTCAAGGCCTGCATTCATTTCGGCTATGCCCCTTACAATCAC
TCGAACATCGCACTACGTTTCCCGCAAACTGGATGCACGAATGTCTTTGC
TAAATCCCGCGCGCACCGCCGTCATTACCGGGGCGTCGGGTGGTATTGGT
GCGGCCACAGCACAGGCGCTTGTGAAGACGCTTCCAACTATAGAACATCT
GATTTTAGCTGCCCGAAACATCGACAAAGCCGAGGCAGTGGCAGAGCCCC
TTCGGGAAGGTATTTCATCCAGACCAGTGAAAGTCACTGTTCTTCCTGTA
GAGCTTTCTAGTCTGCAAAGCGTGCGGGAATGCTCAGAACAAGTTTCGGG
CGTTCTGAACGAGCAGCCGCTCGATTTGCTTATCAACAACGCAGGTATAA
TGGCCTGCCCACTGCTGTACTCACAGATGGAAGGTGAACTGGGACGGGTT
GAACTGCAATTCGCCACAAATCACTTGTCCCATGCTTACCTCACGACCTC
TCTGCTACCGCTTCTCGAAAAGAGCGATCACGGTAGAGCCATTTTTGTTT
CGTCCTTGGCCGTGCGCTTGGCATCGAAACGCACTACAGCCCCGCTAGTT
GGGGAACGAATTGAAAACGTTTTGCGGGACGGAAGTTACGAAAAATGGAG
GATGTACGGCGAATCCAAGTTAGCCATGTCGATGTTCGCACGCGAGCTTT
CGAAAAGGACCAAGGTTGTGTGCGTCAGTCTTCATCCTGGAATCGTGCAA
ACCGAACTTGCAAGATACCTACTGCCAAAGTTCATGCAGATTTCTCCTAG
GAGTGCTCCGGGAAAGCTTCTGGAGGCGTTGTCCAGAAAGGTGTTTGGAC
TCCTGACACCTGAAGAAGGCGCTGAGCTTTCTATTGAATTGAGTCAGAAG
CCAGAAGAAGATCTTGAAGATGGTATGATGTACCTTAAGACAGGGCTCGT
TAAGTTCCAACAACGCGATCTACCGATATTGTGGAACGACAATGAATGTG
AGCGCTTGTACGACGACACCATGGGGTTTATCAGTTCCGTACAAAAGTGA
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