Ggra342.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra342.t1
Unique NameGgra342.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:19357..20061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra342Ggra342Gracilaria gracilis GNS1m malegenetig00000950_pilon 19357..20061 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra342.t1.stop1Ggra342.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 19357..19359 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra342.t1.CDS1Ggra342.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 19357..20061 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra342.t1.exon1Ggra342.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 19357..20061 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra342.t1.start1Ggra342.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 20059..20061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra342.t1Ggra342.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 19357..20061 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra342.t1 ID=Ggra342.t1|Name=Ggra342.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=235bp
MINFVVNTLSYLVSVPFKIVAVLIKPLLFLLVALLFARRFFRRRPQTVTA
CKCTCIIISPYIANGVKTAHVAGCLHCDHSNRLQQAAEQTLATLRSKRNK
QGFWALTSATLSFLGSATTGPIFEVFSGSSVGAAVKTGRFFSINSAVNRL
KPFVADVLERRSHVANCQCDPLASTSSLSGSCDLSGGKYDAMMNKADDSD
AVEFDREELLDHFVSEMDAGSTFVDAALALFDFS*
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spliced messenger RNA

>Ggra342.t1 ID=Ggra342.t1|Name=Ggra342.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000950_pilon:19357..20061- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAACTTCGTGGTAAACACCCTGTCCTATCTTGTCTCAGTTCCTTT
CAAAATCGTGGCCGTACTCATCAAACCTCTGCTCTTTTTGCTAGTAGCAC
TACTATTCGCCAGACGTTTCTTCCGTCGTCGCCCCCAAACGGTTACCGCT
TGCAAATGCACTTGCATTATTATCAGCCCGTATATCGCCAACGGAGTCAA
AACCGCTCACGTTGCTGGATGTCTTCACTGTGATCATTCCAACCGTCTTC
AACAAGCCGCCGAGCAAACCCTCGCCACACTTCGAAGCAAGCGCAACAAG
CAGGGCTTTTGGGCACTCACCAGCGCCACTCTGTCATTTTTGGGATCCGC
CACAACTGGGCCCATCTTCGAAGTCTTCAGTGGCAGCTCTGTTGGTGCCG
CCGTCAAGACAGGTCGCTTCTTCAGCATCAACAGCGCCGTCAATCGCCTC
AAGCCGTTTGTGGCTGACGTTCTGGAAAGGCGCTCTCATGTTGCTAACTG
TCAATGTGACCCCCTTGCTTCTACGTCTTCGCTGTCGGGGTCGTGCGATC
TTTCGGGCGGTAAATATGATGCAATGATGAACAAAGCTGATGATAGCGAC
GCTGTCGAGTTTGATCGCGAGGAGCTTCTTGATCACTTTGTGTCCGAGAT
GGATGCCGGTTCTACTTTTGTCGATGCTGCTCTGGCGCTCTTTGACTTTT
CCTAA
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protein sequence of Ggra342.t1

>Ggra342.t1 ID=Ggra342.t1|Name=Ggra342.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MINFVVNTLSYLVSVPFKIVAVLIKPLLFLLVALLFARRFFRRRPQTVTA
CKCTCIIISPYIANGVKTAHVAGCLHCDHSNRLQQAAEQTLATLRSKRNK
QGFWALTSATLSFLGSATTGPIFEVFSGSSVGAAVKTGRFFSINSAVNRL
KPFVADVLERRSHVANCQCDPLASTSSLSGSCDLSGGKYDAMMNKADDSD
AVEFDREELLDHFVSEMDAGSTFVDAALALFDFS*
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mRNA from alignment at tig00000950_pilon:19357..20061-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra342.t1 ID=Ggra342.t1|Name=Ggra342.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000950_pilon:19357..20061- (Gracilaria gracilis GNS1m male)
ATGATCAACTTCGTGGTAAACACCCTGTCCTATCTTGTCTCAGTTCCTTT
CAAAATCGTGGCCGTACTCATCAAACCTCTGCTCTTTTTGCTAGTAGCAC
TACTATTCGCCAGACGTTTCTTCCGTCGTCGCCCCCAAACGGTTACCGCT
TGCAAATGCACTTGCATTATTATCAGCCCGTATATCGCCAACGGAGTCAA
AACCGCTCACGTTGCTGGATGTCTTCACTGTGATCATTCCAACCGTCTTC
AACAAGCCGCCGAGCAAACCCTCGCCACACTTCGAAGCAAGCGCAACAAG
CAGGGCTTTTGGGCACTCACCAGCGCCACTCTGTCATTTTTGGGATCCGC
CACAACTGGGCCCATCTTCGAAGTCTTCAGTGGCAGCTCTGTTGGTGCCG
CCGTCAAGACAGGTCGCTTCTTCAGCATCAACAGCGCCGTCAATCGCCTC
AAGCCGTTTGTGGCTGACGTTCTGGAAAGGCGCTCTCATGTTGCTAACTG
TCAATGTGACCCCCTTGCTTCTACGTCTTCGCTGTCGGGGTCGTGCGATC
TTTCGGGCGGTAAATATGATGCAATGATGAACAAAGCTGATGATAGCGAC
GCTGTCGAGTTTGATCGCGAGGAGCTTCTTGATCACTTTGTGTCCGAGAT
GGATGCCGGTTCTACTTTTGTCGATGCTGCTCTGGCGCTCTTTGACTTTT
CCTAA
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Coding sequence (CDS) from alignment at tig00000950_pilon:19357..20061-

>Ggra342.t1 ID=Ggra342.t1|Name=Ggra342.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00000950_pilon:19357..20061- (Gracilaria gracilis GNS1m male)
ATGATCAACTTCGTGGTAAACACCCTGTCCTATCTTGTCTCAGTTCCTTT
CAAAATCGTGGCCGTACTCATCAAACCTCTGCTCTTTTTGCTAGTAGCAC
TACTATTCGCCAGACGTTTCTTCCGTCGTCGCCCCCAAACGGTTACCGCT
TGCAAATGCACTTGCATTATTATCAGCCCGTATATCGCCAACGGAGTCAA
AACCGCTCACGTTGCTGGATGTCTTCACTGTGATCATTCCAACCGTCTTC
AACAAGCCGCCGAGCAAACCCTCGCCACACTTCGAAGCAAGCGCAACAAG
CAGGGCTTTTGGGCACTCACCAGCGCCACTCTGTCATTTTTGGGATCCGC
CACAACTGGGCCCATCTTCGAAGTCTTCAGTGGCAGCTCTGTTGGTGCCG
CCGTCAAGACAGGTCGCTTCTTCAGCATCAACAGCGCCGTCAATCGCCTC
AAGCCGTTTGTGGCTGACGTTCTGGAAAGGCGCTCTCATGTTGCTAACTG
TCAATGTGACCCCCTTGCTTCTACGTCTTCGCTGTCGGGGTCGTGCGATC
TTTCGGGCGGTAAATATGATGCAATGATGAACAAAGCTGATGATAGCGAC
GCTGTCGAGTTTGATCGCGAGGAGCTTCTTGATCACTTTGTGTCCGAGAT
GGATGCCGGTTCTACTTTTGTCGATGCTGCTCTGGCGCTCTTTGACTTTT
CCTAA
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