Ggra3419.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3419.t1
Unique NameGgra3419.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:273112..274110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705877.1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08818
Evalue5.3e-132
EggNOG OGsKOG0663@1|root,KOG0663@2759|Eukaryota
EC2.7.11.22
Descriptioncyclin-dependent protein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko01000,ko01001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3419Ggra3419Gracilaria gracilis GNS1m malegenetig00000905_pilon 273112..274110 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3419.t1.stop1Ggra3419.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 273112..273114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3419.t1.CDS1Ggra3419.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 273112..274110 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3419.t1.exon1Ggra3419.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 273112..274110 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3419.t1.start1Ggra3419.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 274108..274110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3419.t1Ggra3419.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 273112..274110 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3419.t1 ID=Ggra3419.t1|Name=Ggra3419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp
MSCPLEKEAPCRSVESYERLNFIDEGTYGRVFRARDIQSGKIYALKQVKL
GQHKNGFPTTALREIATLFSVNHENVVNLREVVVGSTTDKIYLVMEYAEH
DLLSLLERMKRPYSASEIKSLVLQLLRGVAHLHDNWILHRDLKPSNLLLS
GEGVLKICDFGLARNYGDPLSKYSQGVVTLWYRAPELLMGSATYSTAIDM
WAVGCIFAELVLMRPLLQGAGELDQLGKIAAMFGPPSEERWRGFSELPNA
KRVSFRRYGERTFRDQFYEGKGSTRRLCTTENALDLMEKMFLYDPEKRIS
AVDALQHPYFTERPNPKDPSLIQTFPDDRRGR*
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spliced messenger RNA

>Ggra3419.t1 ID=Ggra3419.t1|Name=Ggra3419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000905_pilon:273112..274110- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTGTCCACTGGAGAAAGAGGCACCTTGTCGCAGCGTTGAGTCATA
CGAACGACTAAATTTCATCGATGAGGGCACATATGGCCGTGTGTTTCGCG
CACGCGACATACAAAGTGGGAAAATCTATGCACTCAAGCAGGTAAAACTT
GGGCAACACAAAAACGGGTTTCCAACAACTGCTTTACGTGAAATCGCGAC
GCTGTTCTCCGTTAACCATGAAAATGTTGTCAATCTGCGCGAAGTTGTTG
TTGGATCGACCACTGACAAGATTTATCTCGTTATGGAGTACGCCGAACAT
GATCTGTTGAGTTTGCTTGAGCGCATGAAACGACCGTATTCCGCATCGGA
GATCAAGTCTCTTGTCCTGCAGTTGCTTCGTGGTGTCGCCCATCTTCACG
ACAATTGGATTTTGCACAGGGATCTCAAACCATCTAACTTGCTTCTGAGT
GGTGAGGGTGTGTTGAAGATATGTGACTTCGGCCTGGCTCGCAACTACGG
CGACCCACTGTCCAAATATTCACAAGGCGTGGTCACCTTGTGGTATAGGG
CGCCTGAACTTCTAATGGGTTCGGCCACATACTCAACCGCCATTGACATG
TGGGCTGTCGGTTGCATTTTTGCTGAACTCGTTCTAATGAGACCGCTTCT
GCAGGGCGCCGGAGAATTGGACCAACTCGGGAAAATCGCGGCGATGTTCG
GCCCACCTTCAGAAGAACGATGGCGTGGTTTCTCTGAACTTCCAAACGCA
AAGCGCGTCTCTTTCCGGAGGTACGGAGAGAGAACATTTCGCGATCAGTT
CTACGAGGGCAAGGGGTCGACACGGAGACTGTGCACGACCGAGAACGCTC
TCGATCTCATGGAAAAGATGTTTCTCTACGACCCTGAGAAGCGTATTTCT
GCTGTTGACGCTCTGCAGCATCCATACTTTACCGAGAGGCCTAACCCAAA
AGACCCGTCCCTTATACAAACATTTCCTGACGATCGGCGAGGTAGGTAG
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protein sequence of Ggra3419.t1

>Ggra3419.t1 ID=Ggra3419.t1|Name=Ggra3419.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MSCPLEKEAPCRSVESYERLNFIDEGTYGRVFRARDIQSGKIYALKQVKL
GQHKNGFPTTALREIATLFSVNHENVVNLREVVVGSTTDKIYLVMEYAEH
DLLSLLERMKRPYSASEIKSLVLQLLRGVAHLHDNWILHRDLKPSNLLLS
GEGVLKICDFGLARNYGDPLSKYSQGVVTLWYRAPELLMGSATYSTAIDM
WAVGCIFAELVLMRPLLQGAGELDQLGKIAAMFGPPSEERWRGFSELPNA
KRVSFRRYGERTFRDQFYEGKGSTRRLCTTENALDLMEKMFLYDPEKRIS
AVDALQHPYFTERPNPKDPSLIQTFPDDRRGR*
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mRNA from alignment at tig00000905_pilon:273112..274110-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3419.t1 ID=Ggra3419.t1|Name=Ggra3419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000905_pilon:273112..274110- (Gracilaria gracilis GNS1m male)
ATGTCCTGTCCACTGGAGAAAGAGGCACCTTGTCGCAGCGTTGAGTCATA
CGAACGACTAAATTTCATCGATGAGGGCACATATGGCCGTGTGTTTCGCG
CACGCGACATACAAAGTGGGAAAATCTATGCACTCAAGCAGGTAAAACTT
GGGCAACACAAAAACGGGTTTCCAACAACTGCTTTACGTGAAATCGCGAC
GCTGTTCTCCGTTAACCATGAAAATGTTGTCAATCTGCGCGAAGTTGTTG
TTGGATCGACCACTGACAAGATTTATCTCGTTATGGAGTACGCCGAACAT
GATCTGTTGAGTTTGCTTGAGCGCATGAAACGACCGTATTCCGCATCGGA
GATCAAGTCTCTTGTCCTGCAGTTGCTTCGTGGTGTCGCCCATCTTCACG
ACAATTGGATTTTGCACAGGGATCTCAAACCATCTAACTTGCTTCTGAGT
GGTGAGGGTGTGTTGAAGATATGTGACTTCGGCCTGGCTCGCAACTACGG
CGACCCACTGTCCAAATATTCACAAGGCGTGGTCACCTTGTGGTATAGGG
CGCCTGAACTTCTAATGGGTTCGGCCACATACTCAACCGCCATTGACATG
TGGGCTGTCGGTTGCATTTTTGCTGAACTCGTTCTAATGAGACCGCTTCT
GCAGGGCGCCGGAGAATTGGACCAACTCGGGAAAATCGCGGCGATGTTCG
GCCCACCTTCAGAAGAACGATGGCGTGGTTTCTCTGAACTTCCAAACGCA
AAGCGCGTCTCTTTCCGGAGGTACGGAGAGAGAACATTTCGCGATCAGTT
CTACGAGGGCAAGGGGTCGACACGGAGACTGTGCACGACCGAGAACGCTC
TCGATCTCATGGAAAAGATGTTTCTCTACGACCCTGAGAAGCGTATTTCT
GCTGTTGACGCTCTGCAGCATCCATACTTTACCGAGAGGCCTAACCCAAA
AGACCCGTCCCTTATACAAACATTTCCTGACGATCGGCGAGGTAGGTAG
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Coding sequence (CDS) from alignment at tig00000905_pilon:273112..274110-

>Ggra3419.t1 ID=Ggra3419.t1|Name=Ggra3419.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00000905_pilon:273112..274110- (Gracilaria gracilis GNS1m male)
ATGTCCTGTCCACTGGAGAAAGAGGCACCTTGTCGCAGCGTTGAGTCATA
CGAACGACTAAATTTCATCGATGAGGGCACATATGGCCGTGTGTTTCGCG
CACGCGACATACAAAGTGGGAAAATCTATGCACTCAAGCAGGTAAAACTT
GGGCAACACAAAAACGGGTTTCCAACAACTGCTTTACGTGAAATCGCGAC
GCTGTTCTCCGTTAACCATGAAAATGTTGTCAATCTGCGCGAAGTTGTTG
TTGGATCGACCACTGACAAGATTTATCTCGTTATGGAGTACGCCGAACAT
GATCTGTTGAGTTTGCTTGAGCGCATGAAACGACCGTATTCCGCATCGGA
GATCAAGTCTCTTGTCCTGCAGTTGCTTCGTGGTGTCGCCCATCTTCACG
ACAATTGGATTTTGCACAGGGATCTCAAACCATCTAACTTGCTTCTGAGT
GGTGAGGGTGTGTTGAAGATATGTGACTTCGGCCTGGCTCGCAACTACGG
CGACCCACTGTCCAAATATTCACAAGGCGTGGTCACCTTGTGGTATAGGG
CGCCTGAACTTCTAATGGGTTCGGCCACATACTCAACCGCCATTGACATG
TGGGCTGTCGGTTGCATTTTTGCTGAACTCGTTCTAATGAGACCGCTTCT
GCAGGGCGCCGGAGAATTGGACCAACTCGGGAAAATCGCGGCGATGTTCG
GCCCACCTTCAGAAGAACGATGGCGTGGTTTCTCTGAACTTCCAAACGCA
AAGCGCGTCTCTTTCCGGAGGTACGGAGAGAGAACATTTCGCGATCAGTT
CTACGAGGGCAAGGGGTCGACACGGAGACTGTGCACGACCGAGAACGCTC
TCGATCTCATGGAAAAGATGTTTCTCTACGACCCTGAGAAGCGTATTTCT
GCTGTTGACGCTCTGCAGCATCCATACTTTACCGAGAGGCCTAACCCAAA
AGACCCGTCCCTTATACAAACATTTCCTGACGATCGGCGAGGTAGGTAG
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