Ggra3417.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3417.t1
Unique NameGgra3417.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length523
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:268653..270413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.8937
PFAMsUTP15_C,WD40
Max annot lvl4776|Peronosporales
KEGG koko:K14549
KEGG Pathwayko03008,map03008
Evalue1.06e-87
EggNOG OGsKOG0310@1|root,KOG0310@2759|Eukaryota,3QCZ1@4776|Peronosporales
DescriptionUTP15 C terminal
COG categoryS
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3417Ggra3417Gracilaria gracilis GNS1m malegenetig00000905_pilon 268653..270413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3417.t1Ggra3417.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 268653..270413 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3417.t1.stop1Ggra3417.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 268653..268655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3417.t1.CDS1Ggra3417.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 268653..269847 -
Ggra3417.t1.CDS2Ggra3417.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000905_pilon 270040..270413 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3417.t1.exon1Ggra3417.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 268653..269847 -
Ggra3417.t1.exon2Ggra3417.t1.exon2Gracilaria gracilis GNS1m maleexontig00000905_pilon 270040..270413 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3417.t1.intron1Ggra3417.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000905_pilon 269848..270039 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3417.t1.start1Ggra3417.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 270411..270413 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3417.t1 ID=Ggra3417.t1|Name=Ggra3417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=523bp
MAEQFLPLPIKRQTPRVQLANPRQLAKWKHIHKVAAHRYDQAVTTVRFSP
LKPYELAVAHDFSISLVNPSDGYTRKSLTRFRDVAYSPDYKKDGRLLVAG
CADGSAKVFDVAHRTVLRTFKAHQGSVRTSKFSADGLRVLTGSDDHTVRV
WDLATSTSLFALKEANDYVQAQASSPASMHVWMTGSADRKARLYDLRSRE
CIFELDHSSSISDVHILPGGARAVTIGGTEMRVWDFFVGGRVVYNLQPHS
KGITCGVSDVLGNRFLTGGLDGYVKVHDLSSFQSNGLMSFNSPILSVDIC
SEGKRYAAGMSNGKLEIRAHAKLKAKQHTPFRQDPFKDREFEGWGRGFER
VGEGDRPPLPGTKRYFDRGRNAKPSNDDILITQLSRPTLAKYDRSLRSFK
FGKALDLAVETGKPQVLVCVVEELIIRGCLKGAISERKTDELVPLLVMIR
KHIRMPPFTEYLSYLMHTILDLYSSEFGGGEQADNLVNDIFRQLRYEVQA
CQKLSILRGSVESILSTIQYSA*
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spliced messenger RNA

>Ggra3417.t1 ID=Ggra3417.t1|Name=Ggra3417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000905_pilon:268653..270413- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGCAATTCCTTCCGTTGCCGATTAAGCGGCAGACGCCTCGCGT
GCAGCTAGCCAATCCGCGGCAGCTAGCTAAATGGAAGCACATTCACAAAG
TAGCGGCGCATCGCTACGATCAGGCCGTCACCACCGTGCGATTCTCCCCG
CTCAAGCCGTATGAACTTGCGGTCGCTCACGATTTCTCCATATCCTTGGT
CAATCCGTCCGATGGTTACACAAGAAAGAGTTTGACAAGATTTCGTGATG
TGGCGTACAGCCCGGACTACAAGAAGGATGGACGCTTGCTGGTTGCTGGC
TGTGCTGACGGCTCGGCCAAAGTGTTTGACGTTGCTCACCGCACCGTTTT
GCGTACTTTCAAGGCTCATCAGGGATCTGTTCGAACCTCCAAGTTCAGTG
CTGATGGCCTTCGTGTTCTCACAGGCTCTGATGATCACACGGTCCGAGTC
TGGGACCTTGCCACATCAACTAGTTTGTTCGCTCTCAAGGAAGCCAATGA
CTACGTACAAGCCCAAGCGTCGTCACCGGCTTCCATGCACGTATGGATGA
CAGGTTCTGCCGATCGAAAGGCTCGTTTATATGATCTACGGTCGAGGGAG
TGTATCTTTGAACTAGATCACTCATCATCCATTTCCGATGTTCACATTCT
ACCAGGTGGCGCACGTGCAGTCACAATAGGAGGCACCGAAATGCGTGTGT
GGGATTTCTTTGTCGGCGGACGTGTAGTATACAACTTGCAACCGCATTCA
AAAGGGATCACGTGCGGTGTTTCAGATGTCTTAGGCAATAGGTTTCTGAC
TGGTGGGCTTGACGGATACGTTAAGGTTCACGACTTATCTAGCTTTCAAT
CAAATGGGTTAATGTCCTTCAACTCACCAATCTTGTCGGTAGATATTTGT
TCAGAAGGAAAGCGATACGCGGCAGGTATGTCAAATGGAAAGCTGGAGAT
ACGGGCTCATGCGAAATTGAAAGCGAAGCAGCACACTCCATTTCGACAAG
ACCCTTTCAAAGATCGAGAGTTTGAAGGTTGGGGTCGCGGGTTTGAACGG
GTAGGCGAAGGTGACAGACCCCCCCTTCCTGGTACGAAGCGTTACTTTGA
TCGCGGTCGTAACGCGAAGCCTAGCAACGATGACATTCTTATCACACAGC
TATCTCGACCTACGCTGGCTAAATATGATAGGAGTCTAAGGAGCTTCAAG
TTTGGTAAAGCCCTTGACCTCGCCGTTGAAACAGGGAAACCGCAGGTTCT
TGTATGTGTTGTAGAAGAACTTATCATTCGCGGGTGTTTGAAAGGAGCCA
TTTCAGAGAGAAAGACAGATGAACTTGTACCATTGCTTGTTATGATAAGG
AAACACATTCGCATGCCCCCGTTTACGGAATATCTGTCTTATCTGATGCA
TACAATTCTAGATCTCTACAGCTCTGAGTTTGGAGGGGGTGAACAGGCTG
ACAACCTCGTGAACGACATTTTTCGTCAGCTCCGATATGAAGTGCAAGCA
TGTCAAAAGCTATCGATTCTGAGAGGTAGTGTGGAATCTATTCTGAGCAC
TATCCAGTACTCTGCATGA
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protein sequence of Ggra3417.t1

>Ggra3417.t1 ID=Ggra3417.t1|Name=Ggra3417.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=523bp
MAEQFLPLPIKRQTPRVQLANPRQLAKWKHIHKVAAHRYDQAVTTVRFSP
LKPYELAVAHDFSISLVNPSDGYTRKSLTRFRDVAYSPDYKKDGRLLVAG
CADGSAKVFDVAHRTVLRTFKAHQGSVRTSKFSADGLRVLTGSDDHTVRV
WDLATSTSLFALKEANDYVQAQASSPASMHVWMTGSADRKARLYDLRSRE
CIFELDHSSSISDVHILPGGARAVTIGGTEMRVWDFFVGGRVVYNLQPHS
KGITCGVSDVLGNRFLTGGLDGYVKVHDLSSFQSNGLMSFNSPILSVDIC
SEGKRYAAGMSNGKLEIRAHAKLKAKQHTPFRQDPFKDREFEGWGRGFER
VGEGDRPPLPGTKRYFDRGRNAKPSNDDILITQLSRPTLAKYDRSLRSFK
FGKALDLAVETGKPQVLVCVVEELIIRGCLKGAISERKTDELVPLLVMIR
KHIRMPPFTEYLSYLMHTILDLYSSEFGGGEQADNLVNDIFRQLRYEVQA
CQKLSILRGSVESILSTIQYSA*
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mRNA from alignment at tig00000905_pilon:268653..270413-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3417.t1 ID=Ggra3417.t1|Name=Ggra3417.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000905_pilon:268653..270413- (Gracilaria gracilis GNS1m male)
ATGGCCGAGCAATTCCTTCCGTTGCCGATTAAGCGGCAGACGCCTCGCGT
GCAGCTAGCCAATCCGCGGCAGCTAGCTAAATGGAAGCACATTCACAAAG
TAGCGGCGCATCGCTACGATCAGGCCGTCACCACCGTGCGATTCTCCCCG
CTCAAGCCGTATGAACTTGCGGTCGCTCACGATTTCTCCATATCCTTGGT
CAATCCGTCCGATGGTTACACAAGAAAGAGTTTGACAAGATTTCGTGATG
TGGCGTACAGCCCGGACTACAAGAAGGATGGACGCTTGCTGGTTGCTGGC
TGTGCTGACGGCTCGGCCAAAGTGTTTGACGTTGCTCACCGCACCGTTTT
GCGTACTTTCAAGGCTCATCAGGGGTAAGTCTAGATCCCCTCTTTTTTCT
TCACGTTGAAGTGATGTAACTTGATATCATAGTTCACTCCGAGAGCTACA
ATGACGAAAACCATCATCATTTGTCTTTCGCTCCTATCTGATCAACATAT
ATTCTCTTCATATTTCACATTGCTTGCTAACGCATCAATCCTCTTTTGTC
CCCCTTTCTACCAAAGATCTGTTCGAACCTCCAAGTTCAGTGCTGATGGC
CTTCGTGTTCTCACAGGCTCTGATGATCACACGGTCCGAGTCTGGGACCT
TGCCACATCAACTAGTTTGTTCGCTCTCAAGGAAGCCAATGACTACGTAC
AAGCCCAAGCGTCGTCACCGGCTTCCATGCACGTATGGATGACAGGTTCT
GCCGATCGAAAGGCTCGTTTATATGATCTACGGTCGAGGGAGTGTATCTT
TGAACTAGATCACTCATCATCCATTTCCGATGTTCACATTCTACCAGGTG
GCGCACGTGCAGTCACAATAGGAGGCACCGAAATGCGTGTGTGGGATTTC
TTTGTCGGCGGACGTGTAGTATACAACTTGCAACCGCATTCAAAAGGGAT
CACGTGCGGTGTTTCAGATGTCTTAGGCAATAGGTTTCTGACTGGTGGGC
TTGACGGATACGTTAAGGTTCACGACTTATCTAGCTTTCAATCAAATGGG
TTAATGTCCTTCAACTCACCAATCTTGTCGGTAGATATTTGTTCAGAAGG
AAAGCGATACGCGGCAGGTATGTCAAATGGAAAGCTGGAGATACGGGCTC
ATGCGAAATTGAAAGCGAAGCAGCACACTCCATTTCGACAAGACCCTTTC
AAAGATCGAGAGTTTGAAGGTTGGGGTCGCGGGTTTGAACGGGTAGGCGA
AGGTGACAGACCCCCCCTTCCTGGTACGAAGCGTTACTTTGATCGCGGTC
GTAACGCGAAGCCTAGCAACGATGACATTCTTATCACACAGCTATCTCGA
CCTACGCTGGCTAAATATGATAGGAGTCTAAGGAGCTTCAAGTTTGGTAA
AGCCCTTGACCTCGCCGTTGAAACAGGGAAACCGCAGGTTCTTGTATGTG
TTGTAGAAGAACTTATCATTCGCGGGTGTTTGAAAGGAGCCATTTCAGAG
AGAAAGACAGATGAACTTGTACCATTGCTTGTTATGATAAGGAAACACAT
TCGCATGCCCCCGTTTACGGAATATCTGTCTTATCTGATGCATACAATTC
TAGATCTCTACAGCTCTGAGTTTGGAGGGGGTGAACAGGCTGACAACCTC
GTGAACGACATTTTTCGTCAGCTCCGATATGAAGTGCAAGCATGTCAAAA
GCTATCGATTCTGAGAGGTAGTGTGGAATCTATTCTGAGCACTATCCAGT
ACTCTGCATGA
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Coding sequence (CDS) from alignment at tig00000905_pilon:268653..270413-

>Ggra3417.t1 ID=Ggra3417.t1|Name=Ggra3417.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1569bp|location=Sequence derived from alignment at tig00000905_pilon:268653..270413- (Gracilaria gracilis GNS1m male)
ATGGCCGAGCAATTCCTTCCGTTGCCGATTAAGCGGCAGACGCCTCGCGT
GCAGCTAGCCAATCCGCGGCAGCTAGCTAAATGGAAGCACATTCACAAAG
TAGCGGCGCATCGCTACGATCAGGCCGTCACCACCGTGCGATTCTCCCCG
CTCAAGCCGTATGAACTTGCGGTCGCTCACGATTTCTCCATATCCTTGGT
CAATCCGTCCGATGGTTACACAAGAAAGAGTTTGACAAGATTTCGTGATG
TGGCGTACAGCCCGGACTACAAGAAGGATGGACGCTTGCTGGTTGCTGGC
TGTGCTGACGGCTCGGCCAAAGTGTTTGACGTTGCTCACCGCACCGTTTT
GCGTACTTTCAAGGCTCATCAGGGATCTGTTCGAACCTCCAAGTTCAGTG
CTGATGGCCTTCGTGTTCTCACAGGCTCTGATGATCACACGGTCCGAGTC
TGGGACCTTGCCACATCAACTAGTTTGTTCGCTCTCAAGGAAGCCAATGA
CTACGTACAAGCCCAAGCGTCGTCACCGGCTTCCATGCACGTATGGATGA
CAGGTTCTGCCGATCGAAAGGCTCGTTTATATGATCTACGGTCGAGGGAG
TGTATCTTTGAACTAGATCACTCATCATCCATTTCCGATGTTCACATTCT
ACCAGGTGGCGCACGTGCAGTCACAATAGGAGGCACCGAAATGCGTGTGT
GGGATTTCTTTGTCGGCGGACGTGTAGTATACAACTTGCAACCGCATTCA
AAAGGGATCACGTGCGGTGTTTCAGATGTCTTAGGCAATAGGTTTCTGAC
TGGTGGGCTTGACGGATACGTTAAGGTTCACGACTTATCTAGCTTTCAAT
CAAATGGGTTAATGTCCTTCAACTCACCAATCTTGTCGGTAGATATTTGT
TCAGAAGGAAAGCGATACGCGGCAGGTATGTCAAATGGAAAGCTGGAGAT
ACGGGCTCATGCGAAATTGAAAGCGAAGCAGCACACTCCATTTCGACAAG
ACCCTTTCAAAGATCGAGAGTTTGAAGGTTGGGGTCGCGGGTTTGAACGG
GTAGGCGAAGGTGACAGACCCCCCCTTCCTGGTACGAAGCGTTACTTTGA
TCGCGGTCGTAACGCGAAGCCTAGCAACGATGACATTCTTATCACACAGC
TATCTCGACCTACGCTGGCTAAATATGATAGGAGTCTAAGGAGCTTCAAG
TTTGGTAAAGCCCTTGACCTCGCCGTTGAAACAGGGAAACCGCAGGTTCT
TGTATGTGTTGTAGAAGAACTTATCATTCGCGGGTGTTTGAAAGGAGCCA
TTTCAGAGAGAAAGACAGATGAACTTGTACCATTGCTTGTTATGATAAGG
AAACACATTCGCATGCCCCCGTTTACGGAATATCTGTCTTATCTGATGCA
TACAATTCTAGATCTCTACAGCTCTGAGTTTGGAGGGGGTGAACAGGCTG
ACAACCTCGTGAACGACATTTTTCGTCAGCTCCGATATGAAGTGCAAGCA
TGTCAAAAGCTATCGATTCTGAGAGGTAGTGTGGAATCTATTCTGAGCAC
TATCCAGTACTCTGCATGA
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