Ggra3413.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3413.t1
Unique Name	Ggra3413.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	589

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000905_pilon	contig	tig00000905_pilon:262717..264483 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S31_338V6.1
PFAMs	PCI,RPN7
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12175
GOs	GO:0000003,GO:0000338,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009628,GO:0009642,GO:0009646,GO:0009651,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0019538,GO:0022414,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0070646,GO:0070647,GO:0071704,GO:1901564
Evalue	2.98e-90
EggNOG OGs	KOG0686@1\|root,KOG0686@2759\|Eukaryota,37JPY@33090\|Viridiplantae,3GGQE@35493\|Streptophyta
Description	Cop9 signalosome complex subunit
COG category	OT
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3413	Ggra3413	Gracilaria gracilis GNS1m male	gene	tig00000905_pilon 262717..264483 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3413.t1.start1	Ggra3413.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000905_pilon 262717..262719 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3413.t1.CDS1	Ggra3413.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000905_pilon 262717..264483 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3413.t1.exon1	Ggra3413.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000905_pilon 262717..264483 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3413.t1.stop1	Ggra3413.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000905_pilon 264481..264483 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3413.t1	Ggra3413.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000905_pilon 262717..264483 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000905_pilon:262717..264483+
coding sequence from alignment at tig00000905_pilon:262717..264483+

mRNA sequence

>Ggra3413.t1 ID=Ggra3413.t1|Name=Ggra3413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=589bp
MRTGQTNTLNNISTRWDRIASGIANFQPVLNIRSAFVVLRRYLDLFASSR
RLRTTGSAYSVTNILLIPPTSTSVLLRIHNSLLTSDIERLKIESHSFAFV
NPSVSASCQAQGFFKNPKVSRLVLHLNPYNLKTGIIQMQDEALTFDLDVY
AARYKGRGKIHRMQFIAKKSPSLRTDALRIAIIEAKKGRDTLQYKTLIRE
ADGLIGEEFELDTAWIEENDRWAVQEMEKLHRALEDNRQQQNKEVMRNIH
SDLGDFYHMRGKLQHARGDHIKTRDYCTRAEHNIYMCYKVIQVGIEDSDF
GHVENHFLMAENTPDADKNSPDMSIMRACAGLANMVRGQYAQAVKQFVET
NTDPSEASIAALSQKFGDMIALEDVALYGGLCAMATRTREQLIKEVIKNT
AFANLLELVPDMREIIHDFHNSRFTRCLQTMEKIRPELLLDMYLGSQNHV
EQLFRMIRRKAIVQYTTPFTSVLLRRMESVFNTTAEELEEELLALIESGA
IEARIDSENHELLAKKARPRAEAINSAIRKGRDVFDEAEAMLLRMTLLKN
NLQIEQAGNPVGAMGPRAGSISSVVDNVEDRGRPLRHG*

spliced messenger RNA

>Ggra3413.t1 ID=Ggra3413.t1|Name=Ggra3413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00000905_pilon:262717..264483+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAACCGGCCAAACGAACACGTTGAACAACATTTCCACAAGATGGGA
TCGTATTGCCTCTGGAATTGCAAACTTCCAACCTGTTCTCAACATCAGAT
CCGCTTTCGTCGTCTTACGAAGGTATCTAGACTTGTTCGCATCATCACGC
CGACTCCGCACGACAGGTAGCGCATACTCTGTAACTAATATCCTTCTCAT
CCCACCAACTTCTACTTCAGTCCTACTTCGTATCCATAATAGCCTGCTCA
CTTCCGACATTGAACGCCTAAAAATCGAAAGTCACTCTTTTGCTTTCGTC
AATCCTTCAGTGTCTGCTTCTTGCCAAGCTCAAGGTTTCTTTAAAAACCC
CAAGGTATCTCGCTTAGTTCTTCACTTGAATCCTTATAATTTGAAAACCG
GTATCATCCAAATGCAAGACGAAGCGCTCACCTTCGACTTGGATGTTTAT
GCCGCGCGGTACAAGGGACGTGGAAAGATCCATCGCATGCAGTTCATAGC
GAAGAAATCCCCGTCCTTACGTACCGATGCGTTGCGTATTGCTATCATCG
AAGCAAAGAAAGGCCGTGACACTCTGCAGTACAAAACACTCATCAGGGAA
GCGGACGGGCTCATTGGCGAAGAGTTCGAACTTGATACGGCTTGGATCGA
AGAGAATGATCGTTGGGCAGTACAGGAAATGGAGAAGCTACATCGAGCTT
TAGAGGATAATCGCCAGCAACAGAACAAAGAGGTCATGAGGAACATTCAT
AGCGACCTGGGAGATTTCTATCACATGCGGGGCAAACTGCAGCATGCAAG
AGGGGATCACATTAAGACTCGTGATTATTGTACTCGCGCTGAACATAACA
TTTATATGTGCTACAAGGTCATTCAGGTTGGTATCGAGGACTCTGACTTT
GGTCATGTAGAGAACCATTTCCTCATGGCTGAGAACACTCCGGATGCTGA
CAAGAACTCCCCTGATATGTCCATCATGCGTGCGTGTGCAGGCTTGGCCA
ATATGGTCAGAGGCCAGTATGCACAGGCCGTGAAGCAATTTGTTGAAACA
AATACCGACCCCAGCGAAGCGAGCATCGCGGCCCTTTCGCAGAAGTTTGG
TGATATGATCGCTTTGGAAGACGTTGCTTTGTATGGGGGTCTTTGCGCGA
TGGCGACGAGAACAAGAGAACAGCTTATCAAGGAAGTCATCAAGAACACT
GCGTTCGCCAACTTGCTGGAACTTGTTCCAGATATGCGCGAGATAATTCA
CGATTTCCATAATTCTCGCTTCACACGCTGCTTACAAACAATGGAGAAGA
TCCGACCTGAACTTTTGCTAGACATGTATCTCGGATCGCAAAACCATGTT
GAACAACTCTTTCGTATGATTCGTCGCAAAGCTATTGTGCAATACACAAC
CCCCTTCACATCTGTTTTATTGAGACGAATGGAATCTGTTTTCAACACGA
CGGCAGAAGAACTAGAAGAGGAGTTGTTAGCGTTGATAGAATCTGGTGCG
ATTGAAGCGCGGATCGACTCCGAAAACCACGAGTTGCTAGCCAAGAAGGC
ACGGCCGCGTGCTGAGGCGATCAACAGTGCAATACGAAAAGGCCGAGACG
TATTCGACGAAGCGGAGGCGATGCTGTTGCGCATGACACTGTTGAAGAAT
AACTTGCAGATTGAGCAAGCTGGAAACCCCGTCGGGGCGATGGGACCAAG
GGCTGGAAGCATCAGCTCTGTTGTTGACAATGTGGAAGATAGAGGTCGAC
CTCTTCGCCATGGGTAG

protein sequence of Ggra3413.t1

>Ggra3413.t1 ID=Ggra3413.t1|Name=Ggra3413.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=589bp
MRTGQTNTLNNISTRWDRIASGIANFQPVLNIRSAFVVLRRYLDLFASSR
RLRTTGSAYSVTNILLIPPTSTSVLLRIHNSLLTSDIERLKIESHSFAFV
NPSVSASCQAQGFFKNPKVSRLVLHLNPYNLKTGIIQMQDEALTFDLDVY
AARYKGRGKIHRMQFIAKKSPSLRTDALRIAIIEAKKGRDTLQYKTLIRE
ADGLIGEEFELDTAWIEENDRWAVQEMEKLHRALEDNRQQQNKEVMRNIH
SDLGDFYHMRGKLQHARGDHIKTRDYCTRAEHNIYMCYKVIQVGIEDSDF
GHVENHFLMAENTPDADKNSPDMSIMRACAGLANMVRGQYAQAVKQFVET
NTDPSEASIAALSQKFGDMIALEDVALYGGLCAMATRTREQLIKEVIKNT
AFANLLELVPDMREIIHDFHNSRFTRCLQTMEKIRPELLLDMYLGSQNHV
EQLFRMIRRKAIVQYTTPFTSVLLRRMESVFNTTAEELEEELLALIESGA
IEARIDSENHELLAKKARPRAEAINSAIRKGRDVFDEAEAMLLRMTLLKN
NLQIEQAGNPVGAMGPRAGSISSVVDNVEDRGRPLRHG*

mRNA from alignment at tig00000905_pilon:262717..264483+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3413.t1 ID=Ggra3413.t1|Name=Ggra3413.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00000905_pilon:262717..264483+ (Gracilaria gracilis GNS1m male)
ATGCGAACCGGCCAAACGAACACGTTGAACAACATTTCCACAAGATGGGA
TCGTATTGCCTCTGGAATTGCAAACTTCCAACCTGTTCTCAACATCAGAT
CCGCTTTCGTCGTCTTACGAAGGTATCTAGACTTGTTCGCATCATCACGC
CGACTCCGCACGACAGGTAGCGCATACTCTGTAACTAATATCCTTCTCAT
CCCACCAACTTCTACTTCAGTCCTACTTCGTATCCATAATAGCCTGCTCA
CTTCCGACATTGAACGCCTAAAAATCGAAAGTCACTCTTTTGCTTTCGTC
AATCCTTCAGTGTCTGCTTCTTGCCAAGCTCAAGGTTTCTTTAAAAACCC
CAAGGTATCTCGCTTAGTTCTTCACTTGAATCCTTATAATTTGAAAACCG
GTATCATCCAAATGCAAGACGAAGCGCTCACCTTCGACTTGGATGTTTAT
GCCGCGCGGTACAAGGGACGTGGAAAGATCCATCGCATGCAGTTCATAGC
GAAGAAATCCCCGTCCTTACGTACCGATGCGTTGCGTATTGCTATCATCG
AAGCAAAGAAAGGCCGTGACACTCTGCAGTACAAAACACTCATCAGGGAA
GCGGACGGGCTCATTGGCGAAGAGTTCGAACTTGATACGGCTTGGATCGA
AGAGAATGATCGTTGGGCAGTACAGGAAATGGAGAAGCTACATCGAGCTT
TAGAGGATAATCGCCAGCAACAGAACAAAGAGGTCATGAGGAACATTCAT
AGCGACCTGGGAGATTTCTATCACATGCGGGGCAAACTGCAGCATGCAAG
AGGGGATCACATTAAGACTCGTGATTATTGTACTCGCGCTGAACATAACA
TTTATATGTGCTACAAGGTCATTCAGGTTGGTATCGAGGACTCTGACTTT
GGTCATGTAGAGAACCATTTCCTCATGGCTGAGAACACTCCGGATGCTGA
CAAGAACTCCCCTGATATGTCCATCATGCGTGCGTGTGCAGGCTTGGCCA
ATATGGTCAGAGGCCAGTATGCACAGGCCGTGAAGCAATTTGTTGAAACA
AATACCGACCCCAGCGAAGCGAGCATCGCGGCCCTTTCGCAGAAGTTTGG
TGATATGATCGCTTTGGAAGACGTTGCTTTGTATGGGGGTCTTTGCGCGA
TGGCGACGAGAACAAGAGAACAGCTTATCAAGGAAGTCATCAAGAACACT
GCGTTCGCCAACTTGCTGGAACTTGTTCCAGATATGCGCGAGATAATTCA
CGATTTCCATAATTCTCGCTTCACACGCTGCTTACAAACAATGGAGAAGA
TCCGACCTGAACTTTTGCTAGACATGTATCTCGGATCGCAAAACCATGTT
GAACAACTCTTTCGTATGATTCGTCGCAAAGCTATTGTGCAATACACAAC
CCCCTTCACATCTGTTTTATTGAGACGAATGGAATCTGTTTTCAACACGA
CGGCAGAAGAACTAGAAGAGGAGTTGTTAGCGTTGATAGAATCTGGTGCG
ATTGAAGCGCGGATCGACTCCGAAAACCACGAGTTGCTAGCCAAGAAGGC
ACGGCCGCGTGCTGAGGCGATCAACAGTGCAATACGAAAAGGCCGAGACG
TATTCGACGAAGCGGAGGCGATGCTGTTGCGCATGACACTGTTGAAGAAT
AACTTGCAGATTGAGCAAGCTGGAAACCCCGTCGGGGCGATGGGACCAAG
GGCTGGAAGCATCAGCTCTGTTGTTGACAATGTGGAAGATAGAGGTCGAC
CTCTTCGCCATGGGTAG

Coding sequence (CDS) from alignment at tig00000905_pilon:262717..264483+

>Ggra3413.t1 ID=Ggra3413.t1|Name=Ggra3413.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1767bp|location=Sequence derived from alignment at tig00000905_pilon:262717..264483+ (Gracilaria gracilis GNS1m male)
ATGCGAACCGGCCAAACGAACACGTTGAACAACATTTCCACAAGATGGGA
TCGTATTGCCTCTGGAATTGCAAACTTCCAACCTGTTCTCAACATCAGAT
CCGCTTTCGTCGTCTTACGAAGGTATCTAGACTTGTTCGCATCATCACGC
CGACTCCGCACGACAGGTAGCGCATACTCTGTAACTAATATCCTTCTCAT
CCCACCAACTTCTACTTCAGTCCTACTTCGTATCCATAATAGCCTGCTCA
CTTCCGACATTGAACGCCTAAAAATCGAAAGTCACTCTTTTGCTTTCGTC
AATCCTTCAGTGTCTGCTTCTTGCCAAGCTCAAGGTTTCTTTAAAAACCC
CAAGGTATCTCGCTTAGTTCTTCACTTGAATCCTTATAATTTGAAAACCG
GTATCATCCAAATGCAAGACGAAGCGCTCACCTTCGACTTGGATGTTTAT
GCCGCGCGGTACAAGGGACGTGGAAAGATCCATCGCATGCAGTTCATAGC
GAAGAAATCCCCGTCCTTACGTACCGATGCGTTGCGTATTGCTATCATCG
AAGCAAAGAAAGGCCGTGACACTCTGCAGTACAAAACACTCATCAGGGAA
GCGGACGGGCTCATTGGCGAAGAGTTCGAACTTGATACGGCTTGGATCGA
AGAGAATGATCGTTGGGCAGTACAGGAAATGGAGAAGCTACATCGAGCTT
TAGAGGATAATCGCCAGCAACAGAACAAAGAGGTCATGAGGAACATTCAT
AGCGACCTGGGAGATTTCTATCACATGCGGGGCAAACTGCAGCATGCAAG
AGGGGATCACATTAAGACTCGTGATTATTGTACTCGCGCTGAACATAACA
TTTATATGTGCTACAAGGTCATTCAGGTTGGTATCGAGGACTCTGACTTT
GGTCATGTAGAGAACCATTTCCTCATGGCTGAGAACACTCCGGATGCTGA
CAAGAACTCCCCTGATATGTCCATCATGCGTGCGTGTGCAGGCTTGGCCA
ATATGGTCAGAGGCCAGTATGCACAGGCCGTGAAGCAATTTGTTGAAACA
AATACCGACCCCAGCGAAGCGAGCATCGCGGCCCTTTCGCAGAAGTTTGG
TGATATGATCGCTTTGGAAGACGTTGCTTTGTATGGGGGTCTTTGCGCGA
TGGCGACGAGAACAAGAGAACAGCTTATCAAGGAAGTCATCAAGAACACT
GCGTTCGCCAACTTGCTGGAACTTGTTCCAGATATGCGCGAGATAATTCA
CGATTTCCATAATTCTCGCTTCACACGCTGCTTACAAACAATGGAGAAGA
TCCGACCTGAACTTTTGCTAGACATGTATCTCGGATCGCAAAACCATGTT
GAACAACTCTTTCGTATGATTCGTCGCAAAGCTATTGTGCAATACACAAC
CCCCTTCACATCTGTTTTATTGAGACGAATGGAATCTGTTTTCAACACGA
CGGCAGAAGAACTAGAAGAGGAGTTGTTAGCGTTGATAGAATCTGGTGCG
ATTGAAGCGCGGATCGACTCCGAAAACCACGAGTTGCTAGCCAAGAAGGC
ACGGCCGCGTGCTGAGGCGATCAACAGTGCAATACGAAAAGGCCGAGACG
TATTCGACGAAGCGGAGGCGATGCTGTTGCGCATGACACTGTTGAAGAAT
AACTTGCAGATTGAGCAAGCTGGAAACCCCGTCGGGGCGATGGGACCAAG
GGCTGGAAGCATCAGCTCTGTTGTTGACAATGTGGAAGATAGAGGTCGAC
CTCTTCGCCATGGGTAG