Ggra3410.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3410.t1
Unique NameGgra3410.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:252827..254032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705248.1
Preferred nameGS1
PFAMsGln-synt_C,Gln-synt_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC02798
KEGG koko:K01915
KEGG ReactionR00253
KEGG Pathwayko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727
GOsGO:0003674,GO:0003735,GO:0003824,GO:0004356,GO:0005198,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006082,GO:0006520,GO:0006536,GO:0006541,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009064,GO:0009506,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010150,GO:0016020,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019676,GO:0019740,GO:0019752,GO:0022626,GO:0030054,GO:0030312,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034357,GO:0042126,GO:0042128,GO:0042221,GO:0042651,GO:0042788,GO:0042802,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0055035,GO:0055044,GO:0071704,GO:0071941,GO:0071944,GO:0090693,GO:0099402,GO:1901564,GO:1901605,GO:1990904,GO:2001057
Evalue2.61e-165
EggNOG OGsCOG0174@1|root,KOG0683@2759|Eukaryota
EC6.3.1.2
Descriptionglutamine biosynthetic process
COG categoryE
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3410Ggra3410Gracilaria gracilis GNS1m malegenetig00000905_pilon 252827..254032 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3410.t1.start1Ggra3410.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 252827..252829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3410.t1.CDS1Ggra3410.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 252827..254032 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3410.t1.exon1Ggra3410.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 252827..254032 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3410.t1.stop1Ggra3410.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 254030..254032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3410.t1Ggra3410.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 252827..254032 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3410.t1 ID=Ggra3410.t1|Name=Ggra3410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp
MGSKRSSAFVPGGIAVAARTDIFSRSQCARRVVAPTAAPRVSMSAAFGAN
TELAGLLSLPLPSNIVMAEYVWLDGFFKLRSKGRTVDAGITDPAGLPEWN
YDGSSTGQAPGDNSEVILKPRAIYKDPFRGGDNILVMCDTYTTKGEPIET
NTRAGCDTVMNKAKNSVPWFGLEQEYFLFDPKTNKPLGFPAIGEPVPQGP
YYCGVGSENAFGREIAEAAWRAQLHAGLKVGGINAEVAPGQWEFQVGPCV
GIEEGDMLWMARYILERVAEIAGVIVNYEPKPVKGDWNGSGCHTNFSTLA
MREDGGYEKAILPAMVPMERNAQEHIKEYGKGNDQRLTGQHETAPINVFR
YGVGDRGASVRIGANVVSDGKGYFEDRRPAANCDPYIVTKMLVKTVCDVS
E*
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spliced messenger RNA

>Ggra3410.t1 ID=Ggra3410.t1|Name=Ggra3410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000905_pilon:252827..254032+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCTAAGCGTAGTTCAGCGTTCGTCCCGGGTGGCATTGCCGTCGC
CGCGCGCACCGACATCTTCTCCCGTTCACAATGCGCGCGTCGTGTCGTCG
CTCCCACCGCAGCCCCACGCGTCTCCATGAGTGCCGCCTTCGGCGCTAAC
ACCGAGCTCGCCGGTCTGCTGTCGCTACCGCTGCCGTCCAACATCGTCAT
GGCCGAGTACGTCTGGCTGGATGGTTTCTTCAAGCTCAGATCGAAGGGCC
GTACTGTCGACGCCGGAATCACTGATCCCGCAGGTCTCCCCGAGTGGAAT
TATGACGGTTCTTCTACGGGCCAGGCGCCAGGGGATAACTCCGAGGTCAT
TCTCAAGCCACGCGCCATCTACAAGGACCCGTTCCGCGGCGGTGACAACA
TTCTCGTCATGTGCGACACGTACACCACGAAGGGTGAGCCCATTGAAACC
AACACCCGCGCTGGTTGCGACACTGTCATGAACAAGGCCAAGAACTCTGT
GCCGTGGTTCGGCCTGGAGCAGGAGTACTTCTTGTTTGACCCCAAGACCA
ACAAGCCACTTGGTTTCCCCGCCATTGGTGAGCCGGTCCCTCAGGGACCG
TACTACTGTGGTGTGGGATCTGAAAATGCCTTCGGCAGAGAGATAGCCGA
AGCAGCCTGGCGCGCGCAGTTGCATGCAGGCCTCAAGGTTGGTGGTATCA
ATGCCGAGGTTGCCCCTGGTCAATGGGAATTCCAGGTTGGGCCTTGCGTG
GGTATTGAAGAAGGTGACATGCTTTGGATGGCACGATACATCTTGGAGAG
AGTTGCTGAGATCGCGGGTGTCATTGTCAACTATGAGCCGAAGCCCGTCA
AGGGTGACTGGAACGGTTCTGGATGCCATACCAACTTCTCAACCTTGGCC
ATGCGCGAAGACGGCGGATATGAGAAGGCCATTTTGCCGGCAATGGTTCC
CATGGAGCGAAATGCTCAAGAGCATATCAAGGAGTATGGAAAAGGAAATG
ATCAGCGTCTCACCGGACAACATGAGACTGCCCCCATTAACGTATTCCGC
TATGGTGTTGGCGATCGTGGCGCCTCAGTTCGTATTGGAGCGAACGTTGT
CAGTGACGGGAAGGGATACTTTGAGGATCGACGCCCGGCCGCCAACTGCG
ATCCGTACATCGTTACTAAAATGCTTGTTAAGACCGTTTGCGATGTGTCT
GAATAA
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protein sequence of Ggra3410.t1

>Ggra3410.t1 ID=Ggra3410.t1|Name=Ggra3410.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=402bp
MGSKRSSAFVPGGIAVAARTDIFSRSQCARRVVAPTAAPRVSMSAAFGAN
TELAGLLSLPLPSNIVMAEYVWLDGFFKLRSKGRTVDAGITDPAGLPEWN
YDGSSTGQAPGDNSEVILKPRAIYKDPFRGGDNILVMCDTYTTKGEPIET
NTRAGCDTVMNKAKNSVPWFGLEQEYFLFDPKTNKPLGFPAIGEPVPQGP
YYCGVGSENAFGREIAEAAWRAQLHAGLKVGGINAEVAPGQWEFQVGPCV
GIEEGDMLWMARYILERVAEIAGVIVNYEPKPVKGDWNGSGCHTNFSTLA
MREDGGYEKAILPAMVPMERNAQEHIKEYGKGNDQRLTGQHETAPINVFR
YGVGDRGASVRIGANVVSDGKGYFEDRRPAANCDPYIVTKMLVKTVCDVS
E*
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mRNA from alignment at tig00000905_pilon:252827..254032+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3410.t1 ID=Ggra3410.t1|Name=Ggra3410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000905_pilon:252827..254032+ (Gracilaria gracilis GNS1m male)
ATGGGTTCTAAGCGTAGTTCAGCGTTCGTCCCGGGTGGCATTGCCGTCGC
CGCGCGCACCGACATCTTCTCCCGTTCACAATGCGCGCGTCGTGTCGTCG
CTCCCACCGCAGCCCCACGCGTCTCCATGAGTGCCGCCTTCGGCGCTAAC
ACCGAGCTCGCCGGTCTGCTGTCGCTACCGCTGCCGTCCAACATCGTCAT
GGCCGAGTACGTCTGGCTGGATGGTTTCTTCAAGCTCAGATCGAAGGGCC
GTACTGTCGACGCCGGAATCACTGATCCCGCAGGTCTCCCCGAGTGGAAT
TATGACGGTTCTTCTACGGGCCAGGCGCCAGGGGATAACTCCGAGGTCAT
TCTCAAGCCACGCGCCATCTACAAGGACCCGTTCCGCGGCGGTGACAACA
TTCTCGTCATGTGCGACACGTACACCACGAAGGGTGAGCCCATTGAAACC
AACACCCGCGCTGGTTGCGACACTGTCATGAACAAGGCCAAGAACTCTGT
GCCGTGGTTCGGCCTGGAGCAGGAGTACTTCTTGTTTGACCCCAAGACCA
ACAAGCCACTTGGTTTCCCCGCCATTGGTGAGCCGGTCCCTCAGGGACCG
TACTACTGTGGTGTGGGATCTGAAAATGCCTTCGGCAGAGAGATAGCCGA
AGCAGCCTGGCGCGCGCAGTTGCATGCAGGCCTCAAGGTTGGTGGTATCA
ATGCCGAGGTTGCCCCTGGTCAATGGGAATTCCAGGTTGGGCCTTGCGTG
GGTATTGAAGAAGGTGACATGCTTTGGATGGCACGATACATCTTGGAGAG
AGTTGCTGAGATCGCGGGTGTCATTGTCAACTATGAGCCGAAGCCCGTCA
AGGGTGACTGGAACGGTTCTGGATGCCATACCAACTTCTCAACCTTGGCC
ATGCGCGAAGACGGCGGATATGAGAAGGCCATTTTGCCGGCAATGGTTCC
CATGGAGCGAAATGCTCAAGAGCATATCAAGGAGTATGGAAAAGGAAATG
ATCAGCGTCTCACCGGACAACATGAGACTGCCCCCATTAACGTATTCCGC
TATGGTGTTGGCGATCGTGGCGCCTCAGTTCGTATTGGAGCGAACGTTGT
CAGTGACGGGAAGGGATACTTTGAGGATCGACGCCCGGCCGCCAACTGCG
ATCCGTACATCGTTACTAAAATGCTTGTTAAGACCGTTTGCGATGTGTCT
GAATAA
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Coding sequence (CDS) from alignment at tig00000905_pilon:252827..254032+

>Ggra3410.t1 ID=Ggra3410.t1|Name=Ggra3410.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00000905_pilon:252827..254032+ (Gracilaria gracilis GNS1m male)
ATGGGTTCTAAGCGTAGTTCAGCGTTCGTCCCGGGTGGCATTGCCGTCGC
CGCGCGCACCGACATCTTCTCCCGTTCACAATGCGCGCGTCGTGTCGTCG
CTCCCACCGCAGCCCCACGCGTCTCCATGAGTGCCGCCTTCGGCGCTAAC
ACCGAGCTCGCCGGTCTGCTGTCGCTACCGCTGCCGTCCAACATCGTCAT
GGCCGAGTACGTCTGGCTGGATGGTTTCTTCAAGCTCAGATCGAAGGGCC
GTACTGTCGACGCCGGAATCACTGATCCCGCAGGTCTCCCCGAGTGGAAT
TATGACGGTTCTTCTACGGGCCAGGCGCCAGGGGATAACTCCGAGGTCAT
TCTCAAGCCACGCGCCATCTACAAGGACCCGTTCCGCGGCGGTGACAACA
TTCTCGTCATGTGCGACACGTACACCACGAAGGGTGAGCCCATTGAAACC
AACACCCGCGCTGGTTGCGACACTGTCATGAACAAGGCCAAGAACTCTGT
GCCGTGGTTCGGCCTGGAGCAGGAGTACTTCTTGTTTGACCCCAAGACCA
ACAAGCCACTTGGTTTCCCCGCCATTGGTGAGCCGGTCCCTCAGGGACCG
TACTACTGTGGTGTGGGATCTGAAAATGCCTTCGGCAGAGAGATAGCCGA
AGCAGCCTGGCGCGCGCAGTTGCATGCAGGCCTCAAGGTTGGTGGTATCA
ATGCCGAGGTTGCCCCTGGTCAATGGGAATTCCAGGTTGGGCCTTGCGTG
GGTATTGAAGAAGGTGACATGCTTTGGATGGCACGATACATCTTGGAGAG
AGTTGCTGAGATCGCGGGTGTCATTGTCAACTATGAGCCGAAGCCCGTCA
AGGGTGACTGGAACGGTTCTGGATGCCATACCAACTTCTCAACCTTGGCC
ATGCGCGAAGACGGCGGATATGAGAAGGCCATTTTGCCGGCAATGGTTCC
CATGGAGCGAAATGCTCAAGAGCATATCAAGGAGTATGGAAAAGGAAATG
ATCAGCGTCTCACCGGACAACATGAGACTGCCCCCATTAACGTATTCCGC
TATGGTGTTGGCGATCGTGGCGCCTCAGTTCGTATTGGAGCGAACGTTGT
CAGTGACGGGAAGGGATACTTTGAGGATCGACGCCCGGCCGCCAACTGCG
ATCCGTACATCGTTACTAAAATGCTTGTTAAGACCGTTTGCGATGTGTCT
GAATAA
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