Ggra3402.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3402.t1
Unique NameGgra3402.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length655
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:144290..146254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706654.1
Preferred nameAMPP
PFAMsCreatinase_N,Creatinase_N_2,Peptidase_M24,Peptidase_M24_C
Max annot lvl2759|Eukaryota
KEGG koko:K01262
GOsGO:0000122,GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006357,GO:0006508,GO:0006518,GO:0006807,GO:0006810,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0009056,GO:0009889,GO:0009890,GO:0009892,GO:0009914,GO:0009926,GO:0009987,GO:0010013,GO:0010035,GO:0010038,GO:0010039,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010815,GO:0010817,GO:0016020,GO:0016787,GO:0017144,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0033218,GO:0033293,GO:0034395,GO:0034396,GO:0034641,GO:0036094,GO:0042221,GO:0042737,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043171,GO:0043177,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0060918,GO:0065007,GO:0065008,GO:0070006,GO:0070011,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071704,GO:0071944,GO:0080090,GO:0097159,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue7.19e-190
EggNOG OGsCOG0006@1|root,KOG2413@2759|Eukaryota
EC3.4.11.9
DescriptionBelongs to the peptidase M24B family
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3402Ggra3402Gracilaria gracilis GNS1m malegenetig00000905_pilon 144290..146254 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3402.t1.start1Ggra3402.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 144290..144292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3402.t1.CDS1Ggra3402.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 144290..146254 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3402.t1.exon1Ggra3402.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 144290..146254 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3402.t1.stop1Ggra3402.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 146252..146254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3402.t1Ggra3402.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 144290..146254 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3402.t1 ID=Ggra3402.t1|Name=Ggra3402.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=655bp
MKRSRHDEQQSPAPRLPSDVAAMAVAQRVRALRRLMQQHAIAAYIVPSDD
AHMSEYVAACDARRAFICGFDGSAGTVLITAERALCWTDGRYFVQAANQL
DPAVFTLMKMYQDPSLEDWIAANLAPGSTVFIDAMTISMASVKQFNAAVA
NANLSQPITLEPLSDAVPNLVDQVWASARPSNPASTIFLHPIEYAGVSLA
DKLANVRDAMRPHNASMLVVTALDDVAWLLNLRASDVEYNPVFWAYVVIT
LDSLTLYVNSTRFQKGVAQYLESNHVKLASYQSLLSDLSKREWHQTDRVW
LDPNTCNYAIARCIEAASPTVHVLRKRSPIVLAKARKCDVELHGMRQAHV
RDGAALVQFLCWLEKQVVQLNKQPTECEAADYLEKMRRAQQRFVSLSFPT
ISSAGANGAVVHYRPYPNSCANITADDVYLVDSGAQYLDGTTDVTRTVHF
GKPSAWQKECFTRVLQGHIAIDSARFPEGTTGLQIDSFARRALWDGGLDY
AHGTGHGVGSFMNVHEGPHMISFKAQANATALEAGFITSNEPGYYEEGAF
GIRIENLCIVKRVDGDGEGDGKSGGGGGAKAGKRFLTMEHITLCPVQREM
IALDMLSEREVQWVDQYHAECERKLTPLLSADTHALEWLARNTQPLRAAP
TSVN*
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spliced messenger RNA

>Ggra3402.t1 ID=Ggra3402.t1|Name=Ggra3402.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00000905_pilon:144290..146254+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGATCGCGCCACGACGAGCAGCAATCGCCCGCGCCGCGTCTGCC
CAGCGACGTGGCGGCCATGGCCGTCGCGCAGCGCGTGCGCGCGCTGCGCC
GCCTCATGCAGCAGCACGCCATCGCGGCGTACATCGTGCCGTCCGACGAC
GCGCACATGTCCGAGTACGTCGCGGCGTGCGACGCGCGCCGCGCCTTCAT
CTGCGGCTTTGACGGCTCGGCCGGCACCGTGCTCATCACCGCCGAACGCG
CGCTGTGCTGGACTGACGGCCGCTACTTTGTGCAGGCTGCCAACCAACTT
GACCCCGCCGTCTTCACGCTCATGAAGATGTACCAGGACCCCTCGCTGGA
GGATTGGATCGCCGCCAATCTCGCGCCGGGCTCCACGGTGTTCATCGACG
CCATGACCATCTCCATGGCCTCTGTCAAGCAATTCAACGCCGCGGTGGCC
AACGCAAACCTGTCGCAGCCCATCACGCTGGAGCCGCTGTCCGACGCAGT
GCCCAACCTGGTGGACCAGGTGTGGGCGTCGGCCAGGCCGTCCAACCCGG
CGTCCACCATCTTCCTGCACCCCATCGAGTACGCCGGCGTGTCGCTCGCC
GATAAGCTCGCCAACGTGCGCGACGCCATGCGCCCACACAACGCCTCCAT
GCTCGTCGTCACCGCGCTGGACGACGTGGCGTGGCTGCTCAACCTGCGCG
CCTCCGACGTCGAGTACAACCCCGTCTTCTGGGCGTACGTCGTCATCACG
CTCGATTCGCTCACGCTGTACGTCAACAGCACGCGCTTTCAAAAGGGCGT
CGCCCAATACCTCGAGAGCAACCACGTCAAGCTGGCGTCGTACCAATCGC
TGCTGAGCGACTTGTCCAAGCGCGAATGGCACCAAACCGACCGCGTGTGG
CTCGATCCCAACACGTGCAACTACGCCATTGCGCGCTGCATCGAGGCAGC
CAGCCCCACTGTGCACGTGCTGCGCAAGCGCAGCCCCATCGTGCTGGCAA
AGGCCAGAAAGTGCGACGTCGAGCTGCACGGCATGCGACAGGCGCACGTA
AGGGACGGCGCCGCGCTGGTGCAGTTCCTGTGCTGGCTGGAGAAGCAGGT
GGTGCAGCTCAACAAGCAGCCCACCGAGTGTGAGGCCGCCGACTATCTGG
AGAAGATGCGCCGCGCGCAGCAGCGTTTCGTGTCGTTGTCGTTCCCCACC
ATCTCCAGCGCCGGCGCCAACGGCGCCGTGGTGCACTACCGACCGTACCC
CAACTCGTGCGCAAACATCACCGCCGACGACGTGTACTTGGTCGACTCGG
GTGCGCAGTACCTGGACGGCACTACCGACGTGACGCGCACGGTGCACTTT
GGCAAGCCCAGCGCGTGGCAGAAGGAGTGCTTCACGCGCGTGCTGCAGGG
GCACATTGCCATCGACAGCGCGCGCTTCCCGGAGGGTACCACCGGGCTGC
AGATCGACTCGTTTGCGAGACGCGCGCTGTGGGACGGCGGACTGGACTAC
GCGCACGGCACAGGTCATGGCGTGGGCTCGTTCATGAACGTGCATGAAGG
CCCGCACATGATCTCGTTCAAGGCGCAGGCGAACGCCACAGCGCTGGAGG
CGGGCTTCATCACCAGCAACGAGCCGGGCTACTACGAGGAGGGCGCGTTC
GGCATCCGCATCGAGAACCTGTGCATCGTGAAGAGGGTGgacggcgacgg
cgaaggcgacggcaagagcggaggcggcggcgGAGCAAAGGCGGGCAAAC
GCTTCCTGACGATGGAGCACATCACGCTGTGCCCGGTGCAGCGGGAGATG
ATCGCGCTCGACATGCTGAGCGAGCGCGAGGTGCAGTGGGTGGACCAGTA
CCACGCCGAGTGTGAGCGGAAGCTGACGCCGCTGCTCAGCGCAGACACGC
ACGCGCTCGAGTGGCTCGCGCGCAACACGCAGCCGCTGCGCGCAGCGCCA
ACGTCGGTAAACTAA
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protein sequence of Ggra3402.t1

>Ggra3402.t1 ID=Ggra3402.t1|Name=Ggra3402.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=655bp
MKRSRHDEQQSPAPRLPSDVAAMAVAQRVRALRRLMQQHAIAAYIVPSDD
AHMSEYVAACDARRAFICGFDGSAGTVLITAERALCWTDGRYFVQAANQL
DPAVFTLMKMYQDPSLEDWIAANLAPGSTVFIDAMTISMASVKQFNAAVA
NANLSQPITLEPLSDAVPNLVDQVWASARPSNPASTIFLHPIEYAGVSLA
DKLANVRDAMRPHNASMLVVTALDDVAWLLNLRASDVEYNPVFWAYVVIT
LDSLTLYVNSTRFQKGVAQYLESNHVKLASYQSLLSDLSKREWHQTDRVW
LDPNTCNYAIARCIEAASPTVHVLRKRSPIVLAKARKCDVELHGMRQAHV
RDGAALVQFLCWLEKQVVQLNKQPTECEAADYLEKMRRAQQRFVSLSFPT
ISSAGANGAVVHYRPYPNSCANITADDVYLVDSGAQYLDGTTDVTRTVHF
GKPSAWQKECFTRVLQGHIAIDSARFPEGTTGLQIDSFARRALWDGGLDY
AHGTGHGVGSFMNVHEGPHMISFKAQANATALEAGFITSNEPGYYEEGAF
GIRIENLCIVKRVDGDGEGDGKSGGGGGAKAGKRFLTMEHITLCPVQREM
IALDMLSEREVQWVDQYHAECERKLTPLLSADTHALEWLARNTQPLRAAP
TSVN*
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mRNA from alignment at tig00000905_pilon:144290..146254+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3402.t1 ID=Ggra3402.t1|Name=Ggra3402.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00000905_pilon:144290..146254+ (Gracilaria gracilis GNS1m male)
ATGAAGCGATCGCGCCACGACGAGCAGCAATCGCCCGCGCCGCGTCTGCC
CAGCGACGTGGCGGCCATGGCCGTCGCGCAGCGCGTGCGCGCGCTGCGCC
GCCTCATGCAGCAGCACGCCATCGCGGCGTACATCGTGCCGTCCGACGAC
GCGCACATGTCCGAGTACGTCGCGGCGTGCGACGCGCGCCGCGCCTTCAT
CTGCGGCTTTGACGGCTCGGCCGGCACCGTGCTCATCACCGCCGAACGCG
CGCTGTGCTGGACTGACGGCCGCTACTTTGTGCAGGCTGCCAACCAACTT
GACCCCGCCGTCTTCACGCTCATGAAGATGTACCAGGACCCCTCGCTGGA
GGATTGGATCGCCGCCAATCTCGCGCCGGGCTCCACGGTGTTCATCGACG
CCATGACCATCTCCATGGCCTCTGTCAAGCAATTCAACGCCGCGGTGGCC
AACGCAAACCTGTCGCAGCCCATCACGCTGGAGCCGCTGTCCGACGCAGT
GCCCAACCTGGTGGACCAGGTGTGGGCGTCGGCCAGGCCGTCCAACCCGG
CGTCCACCATCTTCCTGCACCCCATCGAGTACGCCGGCGTGTCGCTCGCC
GATAAGCTCGCCAACGTGCGCGACGCCATGCGCCCACACAACGCCTCCAT
GCTCGTCGTCACCGCGCTGGACGACGTGGCGTGGCTGCTCAACCTGCGCG
CCTCCGACGTCGAGTACAACCCCGTCTTCTGGGCGTACGTCGTCATCACG
CTCGATTCGCTCACGCTGTACGTCAACAGCACGCGCTTTCAAAAGGGCGT
CGCCCAATACCTCGAGAGCAACCACGTCAAGCTGGCGTCGTACCAATCGC
TGCTGAGCGACTTGTCCAAGCGCGAATGGCACCAAACCGACCGCGTGTGG
CTCGATCCCAACACGTGCAACTACGCCATTGCGCGCTGCATCGAGGCAGC
CAGCCCCACTGTGCACGTGCTGCGCAAGCGCAGCCCCATCGTGCTGGCAA
AGGCCAGAAAGTGCGACGTCGAGCTGCACGGCATGCGACAGGCGCACGTA
AGGGACGGCGCCGCGCTGGTGCAGTTCCTGTGCTGGCTGGAGAAGCAGGT
GGTGCAGCTCAACAAGCAGCCCACCGAGTGTGAGGCCGCCGACTATCTGG
AGAAGATGCGCCGCGCGCAGCAGCGTTTCGTGTCGTTGTCGTTCCCCACC
ATCTCCAGCGCCGGCGCCAACGGCGCCGTGGTGCACTACCGACCGTACCC
CAACTCGTGCGCAAACATCACCGCCGACGACGTGTACTTGGTCGACTCGG
GTGCGCAGTACCTGGACGGCACTACCGACGTGACGCGCACGGTGCACTTT
GGCAAGCCCAGCGCGTGGCAGAAGGAGTGCTTCACGCGCGTGCTGCAGGG
GCACATTGCCATCGACAGCGCGCGCTTCCCGGAGGGTACCACCGGGCTGC
AGATCGACTCGTTTGCGAGACGCGCGCTGTGGGACGGCGGACTGGACTAC
GCGCACGGCACAGGTCATGGCGTGGGCTCGTTCATGAACGTGCATGAAGG
CCCGCACATGATCTCGTTCAAGGCGCAGGCGAACGCCACAGCGCTGGAGG
CGGGCTTCATCACCAGCAACGAGCCGGGCTACTACGAGGAGGGCGCGTTC
GGCATCCGCATCGAGAACCTGTGCATCGTGAAGAGGGTGgacggcgacgg
cgaaggcgacggcaagagcggaggcggcggcgGAGCAAAGGCGGGCAAAC
GCTTCCTGACGATGGAGCACATCACGCTGTGCCCGGTGCAGCGGGAGATG
ATCGCGCTCGACATGCTGAGCGAGCGCGAGGTGCAGTGGGTGGACCAGTA
CCACGCCGAGTGTGAGCGGAAGCTGACGCCGCTGCTCAGCGCAGACACGC
ACGCGCTCGAGTGGCTCGCGCGCAACACGCAGCCGCTGCGCGCAGCGCCA
ACGTCGGTAAACTAA
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Coding sequence (CDS) from alignment at tig00000905_pilon:144290..146254+

>Ggra3402.t1 ID=Ggra3402.t1|Name=Ggra3402.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1965bp|location=Sequence derived from alignment at tig00000905_pilon:144290..146254+ (Gracilaria gracilis GNS1m male)
ATGAAGCGATCGCGCCACGACGAGCAGCAATCGCCCGCGCCGCGTCTGCC
CAGCGACGTGGCGGCCATGGCCGTCGCGCAGCGCGTGCGCGCGCTGCGCC
GCCTCATGCAGCAGCACGCCATCGCGGCGTACATCGTGCCGTCCGACGAC
GCGCACATGTCCGAGTACGTCGCGGCGTGCGACGCGCGCCGCGCCTTCAT
CTGCGGCTTTGACGGCTCGGCCGGCACCGTGCTCATCACCGCCGAACGCG
CGCTGTGCTGGACTGACGGCCGCTACTTTGTGCAGGCTGCCAACCAACTT
GACCCCGCCGTCTTCACGCTCATGAAGATGTACCAGGACCCCTCGCTGGA
GGATTGGATCGCCGCCAATCTCGCGCCGGGCTCCACGGTGTTCATCGACG
CCATGACCATCTCCATGGCCTCTGTCAAGCAATTCAACGCCGCGGTGGCC
AACGCAAACCTGTCGCAGCCCATCACGCTGGAGCCGCTGTCCGACGCAGT
GCCCAACCTGGTGGACCAGGTGTGGGCGTCGGCCAGGCCGTCCAACCCGG
CGTCCACCATCTTCCTGCACCCCATCGAGTACGCCGGCGTGTCGCTCGCC
GATAAGCTCGCCAACGTGCGCGACGCCATGCGCCCACACAACGCCTCCAT
GCTCGTCGTCACCGCGCTGGACGACGTGGCGTGGCTGCTCAACCTGCGCG
CCTCCGACGTCGAGTACAACCCCGTCTTCTGGGCGTACGTCGTCATCACG
CTCGATTCGCTCACGCTGTACGTCAACAGCACGCGCTTTCAAAAGGGCGT
CGCCCAATACCTCGAGAGCAACCACGTCAAGCTGGCGTCGTACCAATCGC
TGCTGAGCGACTTGTCCAAGCGCGAATGGCACCAAACCGACCGCGTGTGG
CTCGATCCCAACACGTGCAACTACGCCATTGCGCGCTGCATCGAGGCAGC
CAGCCCCACTGTGCACGTGCTGCGCAAGCGCAGCCCCATCGTGCTGGCAA
AGGCCAGAAAGTGCGACGTCGAGCTGCACGGCATGCGACAGGCGCACGTA
AGGGACGGCGCCGCGCTGGTGCAGTTCCTGTGCTGGCTGGAGAAGCAGGT
GGTGCAGCTCAACAAGCAGCCCACCGAGTGTGAGGCCGCCGACTATCTGG
AGAAGATGCGCCGCGCGCAGCAGCGTTTCGTGTCGTTGTCGTTCCCCACC
ATCTCCAGCGCCGGCGCCAACGGCGCCGTGGTGCACTACCGACCGTACCC
CAACTCGTGCGCAAACATCACCGCCGACGACGTGTACTTGGTCGACTCGG
GTGCGCAGTACCTGGACGGCACTACCGACGTGACGCGCACGGTGCACTTT
GGCAAGCCCAGCGCGTGGCAGAAGGAGTGCTTCACGCGCGTGCTGCAGGG
GCACATTGCCATCGACAGCGCGCGCTTCCCGGAGGGTACCACCGGGCTGC
AGATCGACTCGTTTGCGAGACGCGCGCTGTGGGACGGCGGACTGGACTAC
GCGCACGGCACAGGTCATGGCGTGGGCTCGTTCATGAACGTGCATGAAGG
CCCGCACATGATCTCGTTCAAGGCGCAGGCGAACGCCACAGCGCTGGAGG
CGGGCTTCATCACCAGCAACGAGCCGGGCTACTACGAGGAGGGCGCGTTC
GGCATCCGCATCGAGAACCTGTGCATCGTGAAGAGGGTGgacggcgacgg
cgaaggcgacggcaagagcggaggcggcggcgGAGCAAAGGCGGGCAAAC
GCTTCCTGACGATGGAGCACATCACGCTGTGCCCGGTGCAGCGGGAGATG
ATCGCGCTCGACATGCTGAGCGAGCGCGAGGTGCAGTGGGTGGACCAGTA
CCACGCCGAGTGTGAGCGGAAGCTGACGCCGCTGCTCAGCGCAGACACGC
ACGCGCTCGAGTGGCTCGCGCGCAACACGCAGCCGCTGCGCGCAGCGCCA
ACGTCGGTAAACTAA
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