Ggra340.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra340.t1
Unique NameGgra340.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length419
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:6968..10642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra340Ggra340Gracilaria gracilis GNS1m malegenetig00000950_pilon 6968..10642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra340.t1Ggra340.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 6968..10642 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra340.t1.start1Ggra340.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 6968..6970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra340.t1.CDS1Ggra340.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 6968..7573 +
Ggra340.t1.CDS2Ggra340.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000950_pilon 9843..10371 +
Ggra340.t1.CDS3Ggra340.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000950_pilon 10521..10642 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra340.t1.exon1Ggra340.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 6968..7573 +
Ggra340.t1.exon2Ggra340.t1.exon2Gracilaria gracilis GNS1m maleexontig00000950_pilon 9843..10371 +
Ggra340.t1.exon3Ggra340.t1.exon3Gracilaria gracilis GNS1m maleexontig00000950_pilon 10521..10642 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra340.t1.intron1Ggra340.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000950_pilon 7574..9842 +
Ggra340.t1.intron2Ggra340.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000950_pilon 10372..10520 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra340.t1.stop1Ggra340.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 10640..10642 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra340.t1 ID=Ggra340.t1|Name=Ggra340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=419bp
MNTFSVFLVTFWSLHLALWTAHAIPTSLKPLFGGLGTGVSASGGFESGGF
ASGPSPSPSPTRSPDAVDTGIGVGSFGAAGAVGATGSASGFVSVSPTSSS
TPEAQGIVIACQGRACLSENDEYQCSDTPLRNPGDTLWLYSDDENQTPLN
IQEAAVTPSRNNVTIPWAQIGGQDPPTTCARIGSINTQNTSGGALFPGIG
EPLTAVPVRSTPTSAGKIDNGDVLGVHSPGTSILAEVQRNGEKGDTKEKS
VSLDADLFSKTSQESSTSITITCNQDVCVSEHQEEYACNIAKPNNEGTLL
LMFATSGDNVNRVVEYQAIIPKSEGSAIAVPWISARNVAAPTTCTRLLPA
FPNSPKPVEEAELLPGNGQTTGFDLSEFDVALLCLPLLSQSEQGDDAEGC
TRFLVWKESDSIIVLDNK*
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spliced messenger RNA

>Ggra340.t1 ID=Ggra340.t1|Name=Ggra340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1257bp|location=Sequence derived from alignment at tig00000950_pilon:6968..10642+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACATTCTCAGTGTTTCTGGTCACTTTTTGGTCGCTTCATCTCGC
TCTATGGACTGCTCATGCCATTCCAACCTCACTAAAGCCCTTATTTGGTG
GACTTGGAACTGGAGTATCTGCAAGTGGAGGATTTGAAAGTGGAGGATTT
GCAAGTGGACCCTCTCCGTCACCCTCGCCGACACGTTCTCCTGATGCAGT
TGATACCGGTATTGGTGTCGGTTCTTTTGGCGCTGCAGGTGCTGTTGGAG
CTACTGGAAGTGCTTCTGGCTTTGTATCAGTATCTCCGACTTCGAGTAGT
ACACCAGAAGCGCAAGGAATCGTCATAGCATGCCAAGGCAGAGCTTGTTT
ATCGGAGAACGATGAATATCAATGCAGCGACACCCCTCTACGCAACCCGG
GGGATACTTTGTGGCTGTACAGCGATGATGAAAACCAAACCCCTCTCAAC
ATTCAGGAAGCCGCAGTCACTCCGAGTCGGAATAATGTTACAATACCCTG
GGCACAAATCGGAGGTCAAGATCCACCCACCACCTGCGCACGTATTGGCT
CCATAAATACGCAAAACACTTCAGGTGGGGCACTATTTCCCGGTATCGGG
GAACCTCTCACCGCTGTACCCGTGCGATCGACTCCGACTTCTGCTGGGAA
GATTGACAACGGCGATGTACTCGGTGTTCATTCACCGGGCACCTCCATCC
TGGCTGAAGTGCAGAGGAATGGCGAGAAGGGCGATACAAAGGAAAAGAGC
GTCAGTCTCGACGCAGACCTTTTCTCAAAGACTTCGCAAGAGTCTTCTAC
ATCAATCACGATAACGTGTAATCAAGACGTATGCGTCTCAGAACATCAGG
AAGAATACGCGTGCAACATTGCCAAACCAAACAACGAGGGTACTTTGCTG
CTGATGTTTGCAACAAGTGGAGATAACGTTAATAGAGTGGTGGAGTACCA
GGCGATCATCCCCAAATCCGAAGGATCTGCAATTGCAGTTCCATGGATAT
CCGCGCGCAATGTCGCCGCTCCAACCACGTGCACGCGTCTCTTACCCGCT
TTCCCCAACAGCCCAAAGCCGGTGGAGGAAGCGGAATTGTTGCCTGGAAA
CGGGCAGACAACGGGGTTTGATCTAAGTGAATTCGaCGTTGCGCTATTGT
GCCTACCGCTTTTAAGTCAAAGCGAACAAGGCGATGACGCCGAGGGATGT
ACTCGTTTCCTTGTGTGGAAAGAGAGTGACTCCATcattgtactggacaa
taagtga
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protein sequence of Ggra340.t1

>Ggra340.t1 ID=Ggra340.t1|Name=Ggra340.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=419bp
MNTFSVFLVTFWSLHLALWTAHAIPTSLKPLFGGLGTGVSASGGFESGGF
ASGPSPSPSPTRSPDAVDTGIGVGSFGAAGAVGATGSASGFVSVSPTSSS
TPEAQGIVIACQGRACLSENDEYQCSDTPLRNPGDTLWLYSDDENQTPLN
IQEAAVTPSRNNVTIPWAQIGGQDPPTTCARIGSINTQNTSGGALFPGIG
EPLTAVPVRSTPTSAGKIDNGDVLGVHSPGTSILAEVQRNGEKGDTKEKS
VSLDADLFSKTSQESSTSITITCNQDVCVSEHQEEYACNIAKPNNEGTLL
LMFATSGDNVNRVVEYQAIIPKSEGSAIAVPWISARNVAAPTTCTRLLPA
FPNSPKPVEEAELLPGNGQTTGFDLSEFDVALLCLPLLSQSEQGDDAEGC
TRFLVWKESDSIIVLDNK*
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mRNA from alignment at tig00000950_pilon:6968..10642+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra340.t1 ID=Ggra340.t1|Name=Ggra340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3675bp|location=Sequence derived from alignment at tig00000950_pilon:6968..10642+ (Gracilaria gracilis GNS1m male)
ATGAACACATTCTCAGTGTTTCTGGTCACTTTTTGGTCGCTTCATCTCGC
TCTATGGACTGCTCATGCCATTCCAACCTCACTAAAGCCCTTATTTGGTG
GACTTGGAACTGGAGTATCTGCAAGTGGAGGATTTGAAAGTGGAGGATTT
GCAAGTGGACCCTCTCCGTCACCCTCGCCGACACGTTCTCCTGATGCAGT
TGATACCGGTATTGGTGTCGGTTCTTTTGGCGCTGCAGGTGCTGTTGGAG
CTACTGGAAGTGCTTCTGGCTTTGTATCAGTATCTCCGACTTCGAGTAGT
ACACCAGAAGCGCAAGGAATCGTCATAGCATGCCAAGGCAGAGCTTGTTT
ATCGGAGAACGATGAATATCAATGCAGCGACACCCCTCTACGCAACCCGG
GGGATACTTTGTGGCTGTACAGCGATGATGAAAACCAAACCCCTCTCAAC
ATTCAGGAAGCCGCAGTCACTCCGAGTCGGAATAATGTTACAATACCCTG
GGCACAAATCGGAGGTCAAGATCCACCCACCACCTGCGCACGTATTGGCT
CCATAAATACGCAAAACACTTCAGGTGGGGCACTATTTCCCGGTATCGGG
GAACCTGTAAATTGTTGTCGCCCTTGTTCTCGTTTACGAAGAAGAGAGCG
GAGTTTATCGTGCTGCACAGCTTGTCCTTTTACTCGGTAGAGAGCATAGC
AGATGATGCAGAAGAGGATTGTGCAAACTGTCAAATAATCAATTGCAGGT
AAATGTAAACCTAAGATGCTTCATATGCACACGCTGAAGAAGCGTGAAAT
GTTCACATGTTGAGGTAAGATTATGTTCGTGTTCGAAAGCTGAACAGCTA
AGTTATCTAAGTTCAGAACAGACGTGGGCGAATCGCGAATGCATGCGCTT
CAACCATGTCACGGTACAAGCACGGAACCGTAGTCACGTATCGTGACGTA
GCGGTGACCAATGGCGTGCGGCACAAATGGCGTTACACGTACTGTGGCTC
TTGCTTTGTTACGCGCTCGCCCTCGAGCATCTCGTTCAGCATCAAGTTAC
AGAACGAGTCTAACACCACCGGATAACCAAGTTGTTCAAAGATCCCTTCA
TCCATTTCTATCACACCCATTGCTGCACACATTTGAAAACCACTTCCGTC
CAGTCTCGGACTACTCCGTTTCCATTGCTTCAGCTACAGGAAAATACATG
TCTAGCCGAAAAAGTAGAAAACAACGGTCTTATAATCGCCTCAGCATATC
AAATGTTGATCCTCGCTGTTGACGACAACCGCCCGCTGGCTTAACTGTCC
ACGGTAGACAGATTCAATGGACCTGTTTAATTGAGCGGGGCAGGTCAAGC
ACAACTATCTATCAGCCCTGCCTTCTCTCGTATCACTTTACAAGGGTAAT
TGTTTCCAGCACCTCCTATCTGTTTGTCAGTTTTGGATCCACAAACGCTA
GAGCCACCGTGTGAAGGAGCATCCGAAATGTCTTGTGTGCCCTTCGGTTC
TCTCATCATCTTATAGAATTGTCATAGGTTGGGTCCAAGTTCGCGTCGAG
ATGGTTACATGTCGAGCAAGAATGAGGAAATCCAAACCACAGTAATTCTT
GGGCTTGCCAAAGAGAGAAAGCATCATCAAGGAGCTTTGCTGCAGTCTTG
TAATAGAGAAATGCCGTTTGCAATAGAGGAAAAGCAGATGACAGCCAGAG
CAAACATGTGGATTGAGTTTCCTAGCCGCACTTACAGATGATACTGATCA
TCATCTTACGTACATCACTGATGATTGTTTGGTAACTTGTCAACCAGATC
GAGCTGGTTAGCTATGTCATGCACGCCCCCATTTGGTCCGACAGAAGGTA
AGTTTGACCTTACAAGTGATACAACAAGGGTATCTAGCTCTGTAGTAGAG
ATCGACAACTTGTCAGCAGAAGATCTAATCTTTCTTCCGTCTCATCGGCG
TAGTGtatatatatatatacatatatatCTCTCTGGTGCTGAGAAACGTT
GAAGATCAGGAAATCATGAGGAAGAGCTTTATCTTCTTCCTGTTCGAAGC
CTCGGAAATTCTACAACTAGCGTCTCATTTTGAAACTAAATCCAGGTGAA
AACAGTCTGCTTATTGAATGTCATGGAATTGTGGGGAACTGTTTTAGCTT
TCAGAGGGTTAAGGGTTAGCGTTTTAACACTAGCTCTCTGTATCCCTCGT
ATCTCGTGACCCACCAGATTTCTGAATCTCATGATCAATGACCAAATTCG
TCATAGAAAGACGAAGAAATCAACGTCTTCATCATGATATGTTGGGATTT
ATATGCAATCCTCTTATCTAGGAACAACCGGTTTCAGCACACAGGCAACA
ACAATCATTGTGATAATTGCTGTTGATAATTGTGAGGCAGTGAGTCCGTT
TCCCTGAACTCGTAGGGGTTAACCGAAAGCACCTCCACTTTGAGGTTAGG
GTTACAGGTTAATGCTTGTAGTAATAAGTTACGCTCAACAACAATTGCTT
CGGAAGCACCCCAACTGTTACATACAATAGCTTTAAAGTTGTATTCTGTA
CATCACTGTACCTTCGTTTATGTTGTATGACGCTCCATTGTGGGAGCCTC
CATTCCTTGTTGCCGAATCGAACAAACCGTTTCTACGTAAGAGATCTGTC
GGATGACGATGGCCTCAAAGACAAGTCACGAGTACCATGATCATCAGAAG
CTCCTCGTTCTGATATTCTCCCTTCTGCCCATCGCAAGAAAACCCCATTG
ATCAGCTTGCTGTGATTTCGCTGGCAGCTACACTGATCTCAAAGAACTCA
CACTCGTCATAGCCGTTTCCCTGGTTTGCAATGGATATGAGAACAGCTGT
GTTAATCTCATTCATCTTCCTTCAGCTCACCGCTGTACCCGTGCGATCGA
CTCCGACTTCTGCTGGGAAGATTGACAACGGCGATGTACTCGGTGTTCAT
TCACCGGGCACCTCCATCCTGGCTGAAGTGCAGAGGAATGGCGAGAAGGG
CGATACAAAGGAAAAGAGCGTCAGTCTCGACGCAGACCTTTTCTCAAAGA
CTTCGCAAGAGTCTTCTACATCAATCACGATAACGTGTAATCAAGACGTA
TGCGTCTCAGAACATCAGGAAGAATACGCGTGCAACATTGCCAAACCAAA
CAACGAGGGTACTTTGCTGCTGATGTTTGCAACAAGTGGAGATAACGTTA
ATAGAGTGGTGGAGTACCAGGCGATCATCCCCAAATCCGAAGGATCTGCA
ATTGCAGTTCCATGGATATCCGCGCGCAATGTCGCCGCTCCAACCACGTG
CACGCGTCTCTTACCCGCTTTCCCCAACAGCCCAAAGCCGGTGGAGGAAG
CGGAATTGTTGCCTGGAAACGGGCAGACAACGGGGTTTGATCTAAGTGAA
TTCGGTCAAGagcttgttaacactggtgcaccattaggggcgaatgccgg
ggtggggagaccgtttggaagttgttgcggtggttgctcgttttccaaga
agaatcggccacctgggttctcatgttgcagagggtgttcctttgtatga
tagaCGTTGCGCTATTGTGCCTACCGCTTTTAAGTCAAAGCGAACAAGGC
GATGACGCCGAGGGATGTACTCGTTTCCTTGTGTGGAAAGAGAGTGACTC
CATcattgtactggacaataagtga
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Coding sequence (CDS) from alignment at tig00000950_pilon:6968..10642+

>Ggra340.t1 ID=Ggra340.t1|Name=Ggra340.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1257bp|location=Sequence derived from alignment at tig00000950_pilon:6968..10642+ (Gracilaria gracilis GNS1m male)
ATGAACACATTCTCAGTGTTTCTGGTCACTTTTTGGTCGCTTCATCTCGC
TCTATGGACTGCTCATGCCATTCCAACCTCACTAAAGCCCTTATTTGGTG
GACTTGGAACTGGAGTATCTGCAAGTGGAGGATTTGAAAGTGGAGGATTT
GCAAGTGGACCCTCTCCGTCACCCTCGCCGACACGTTCTCCTGATGCAGT
TGATACCGGTATTGGTGTCGGTTCTTTTGGCGCTGCAGGTGCTGTTGGAG
CTACTGGAAGTGCTTCTGGCTTTGTATCAGTATCTCCGACTTCGAGTAGT
ACACCAGAAGCGCAAGGAATCGTCATAGCATGCCAAGGCAGAGCTTGTTT
ATCGGAGAACGATGAATATCAATGCAGCGACACCCCTCTACGCAACCCGG
GGGATACTTTGTGGCTGTACAGCGATGATGAAAACCAAACCCCTCTCAAC
ATTCAGGAAGCCGCAGTCACTCCGAGTCGGAATAATGTTACAATACCCTG
GGCACAAATCGGAGGTCAAGATCCACCCACCACCTGCGCACGTATTGGCT
CCATAAATACGCAAAACACTTCAGGTGGGGCACTATTTCCCGGTATCGGG
GAACCTCTCACCGCTGTACCCGTGCGATCGACTCCGACTTCTGCTGGGAA
GATTGACAACGGCGATGTACTCGGTGTTCATTCACCGGGCACCTCCATCC
TGGCTGAAGTGCAGAGGAATGGCGAGAAGGGCGATACAAAGGAAAAGAGC
GTCAGTCTCGACGCAGACCTTTTCTCAAAGACTTCGCAAGAGTCTTCTAC
ATCAATCACGATAACGTGTAATCAAGACGTATGCGTCTCAGAACATCAGG
AAGAATACGCGTGCAACATTGCCAAACCAAACAACGAGGGTACTTTGCTG
CTGATGTTTGCAACAAGTGGAGATAACGTTAATAGAGTGGTGGAGTACCA
GGCGATCATCCCCAAATCCGAAGGATCTGCAATTGCAGTTCCATGGATAT
CCGCGCGCAATGTCGCCGCTCCAACCACGTGCACGCGTCTCTTACCCGCT
TTCCCCAACAGCCCAAAGCCGGTGGAGGAAGCGGAATTGTTGCCTGGAAA
CGGGCAGACAACGGGGTTTGATCTAAGTGAATTCGaCGTTGCGCTATTGT
GCCTACCGCTTTTAAGTCAAAGCGAACAAGGCGATGACGCCGAGGGATGT
ACTCGTTTCCTTGTGTGGAAAGAGAGTGACTCCATcattgtactggacaa
taagtga
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