Ggra3399.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3399.t1
Unique NameGgra3399.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length596
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:140471..142258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002948634.1
PFAMsDUF773
Max annot lvl3041|Chlorophyta
Evalue7.68e-15
EggNOG OGsKOG2607@1|root,KOG2607@2759|Eukaryota,37PEQ@33090|Viridiplantae,34K0J@3041|Chlorophyta
DescriptionProtein of unknown function (DUF773)
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3399Ggra3399Gracilaria gracilis GNS1m malegenetig00000905_pilon 140471..142258 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3399.t1.stop1Ggra3399.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 140471..140473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3399.t1.CDS1Ggra3399.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 140471..142258 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3399.t1.exon1Ggra3399.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 140471..142258 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3399.t1.start1Ggra3399.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 142256..142258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3399.t1Ggra3399.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 140471..142258 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3399.t1 ID=Ggra3399.t1|Name=Ggra3399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=596bp
MSRAHHPHALLPIDIHYNKLLHWLVDRRAVPPKWALHLSTARTLTRAAIN
ATPPDLQTALQITPLSADEHLPYATARTYLRQLVGEQPLPAPASASAPLP
ARDKQLLSGAYKSPVLRAWAAAVSSFEARGVHLADAAQQLVRRADVDAPA
LKATIARLARTLADAARRESQLIRAAADAAARFDDALSRHGLRRDAGEFD
AQLAAQVAAQLPTLLRTAVLCAREPRFEHAVAYYRAFCAYVRGADADAGD
GDGDGDGDGDGDGDGDGGEEDVCAALREVMRADVDVLLAPPLARRREALG
HAPDWGDGPEAAAADGGDVQGDVEGGGDADVDWGIEVGASGVDAQQPTSS
EAPLEGGGGGDDDDDANDVGVSQTAEIDWSAAMDVVLDEDEDGDVGGYKA
TRDAHKQAAPTLYDATFRERYVNDLAELCAFLAQRLAELAATHGGGGGDG
GGDGALWLQLRGSGGAPPGVARVQPHDVQAMAAAAHDALRAVNGRDARAV
LALHNSAGARHRLGAHVLALRVRAERAQDAVHALRVARADAAVQLRVEKR
RLQTLREQTARLKAHTEAALGALYGGRQVHIVGEINALLAANDSS*
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spliced messenger RNA

>Ggra3399.t1 ID=Ggra3399.t1|Name=Ggra3399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000905_pilon:140471..142258- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCGCGCCCACCACCCCCACGCGCTGCTGCCCATCGACATCCACTA
CAACAAGCTGCTGCACTGGCTGGTCGACCGCCGCGCCGTCCCGCCCAAAT
GGGCGCTGCATCTCTCCACCGCGCGCACCCTCACGCGCGCCGCCATCAAC
GCCACGCCGCCCGATCTGCAAACCGCGCTGCAGATCACCCCCCTCTCCGC
CGATGAGCACCTGCCCTACGCGACGGCGCGCACCTATCTGCGCCAGCTCG
TCGGCGAGCAGCCGCTGCCCGCGCCCGCGTCCGCGTCCGCGCCGCTACCC
GCGCGCGACAAGCAGCTGCTGTCCGGCGCGTACAAGTCGCCCGTGCTGCG
CGCCTGGGCCGCCGCCGTGTCGAGCTTCGAGGCGCGCGGCGTGCATCTAG
CCGACGCCGCGCAGCAGCTGGTGCGACGCGCCGACGTCGACGCGCCCGCG
CTCAAGGCCACCATCGCGCGGCTGGCGCGCACGCTGGCCGACGCCGCGCG
CCGCGAGTCGCAGCTCATCCGCGCCGCCGCTGACGCCGCCGCGCGCTTTG
ACGACGCGCTGTCGCGCCACGGCCTGCGCCGCGACGCCGGCGAGTTCGAC
GCGCAGCTCGCGGCTCAAGTGGCGGCGCAGCTGCCGACGCTGCTGCGCAC
CGCCGTGCTGTGCGCGCGTGAGCCGCGCTTCGAGCACGCCGTCGCGTACT
ACCGCGCGTTCTGCGCATATGTGCGCGGCGCCGACGCCGACGCCGGCGAT
GGCGATGGCGATGGCGACGGCGACGGCGACGGCGATGGCGATGGCGATGG
CGGCGAGGAGGACGTGTGCGCCGCGCTGCGCGAGGTGATGCGCGCCGATG
TTGATGTGCTCTTGGCGCCGCCGCTTGCGCGGCGCCGGGAGGCGCTCGGC
CACGCGCCAGACTGGGGTGATGGACCGGAGGCGGCGGCGGCGGATGGCGG
CGACGTGCAGGGGGATGTGGAGGGCGGCGGCGACGCGGACGTGGACTGGG
GCATCGAGGTAGGCGCGTCGGGAGTGGACGCGCAGCAGCCGACGAGCAGC
GAGGCGCCGCTGGAAGGCGGCGGCGGCGGCGACGACGACGACGACGCCAA
CGACGTCGGCGTGTCGCAGACGGCGGAGATCGACTGGAGCGCGGCAATGG
ATGTGGTACTCGACGAAGACGAAGACGGCGACGTCGGCGGTTACAAGGCC
ACACGCGACGCGCACAAGCAGGCGGCGCCCACGCTGTACGACGCGACGTT
CCGCGAGCGCTACGTGAACGACCTGGCCGAGCTGTGCGCCTTCCTGGCGC
AGCGGCTGGCCGAGCTGGCCGCAACGCACGGCGGCGGCGGCGGTGACGGC
GGCGGCGACGGCGCGCTGTGGCTGCAGCTGCGCGGCAGCGGCGGCGCGCC
GCCGGGCGTGGCGCGCGTGCAGCCGCACGACGTGCAGGCGATGGCGGCGG
CGGCGCACGACGCGCTGCGCGCCGTCAACGGGCGCGACGCGCGCGCCGTG
CTGGCGCTGCACAACAGCGCCGGCGCGCGCCATCGGCTGGGCGCGCACGT
GCTGGCGCTGCGGGTGCGCGCCGAGCGCGCGCAGGACGCGGTGCACGCGC
TGCGCGTGGCGCGCGCCGACGCGGCCGTGCAGCTGCGCGTGGAGAAGCGC
CGCTTGCAGACGCTGCGCGAGCAGACGGCGCGCCTCAAGGCGCACACCGA
GGCCGCGCTCGGCGCCTTGTATGGCGGCCGTCAGGTGCACATTGTCGGCG
AGATCAATGCGCTGCTTGCTGCCAATGATTCATCATGA
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protein sequence of Ggra3399.t1

>Ggra3399.t1 ID=Ggra3399.t1|Name=Ggra3399.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=596bp
MSRAHHPHALLPIDIHYNKLLHWLVDRRAVPPKWALHLSTARTLTRAAIN
ATPPDLQTALQITPLSADEHLPYATARTYLRQLVGEQPLPAPASASAPLP
ARDKQLLSGAYKSPVLRAWAAAVSSFEARGVHLADAAQQLVRRADVDAPA
LKATIARLARTLADAARRESQLIRAAADAAARFDDALSRHGLRRDAGEFD
AQLAAQVAAQLPTLLRTAVLCAREPRFEHAVAYYRAFCAYVRGADADAGD
GDGDGDGDGDGDGDGDGGEEDVCAALREVMRADVDVLLAPPLARRREALG
HAPDWGDGPEAAAADGGDVQGDVEGGGDADVDWGIEVGASGVDAQQPTSS
EAPLEGGGGGDDDDDANDVGVSQTAEIDWSAAMDVVLDEDEDGDVGGYKA
TRDAHKQAAPTLYDATFRERYVNDLAELCAFLAQRLAELAATHGGGGGDG
GGDGALWLQLRGSGGAPPGVARVQPHDVQAMAAAAHDALRAVNGRDARAV
LALHNSAGARHRLGAHVLALRVRAERAQDAVHALRVARADAAVQLRVEKR
RLQTLREQTARLKAHTEAALGALYGGRQVHIVGEINALLAANDSS*
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mRNA from alignment at tig00000905_pilon:140471..142258-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3399.t1 ID=Ggra3399.t1|Name=Ggra3399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000905_pilon:140471..142258- (Gracilaria gracilis GNS1m male)
ATGAGCCGCGCCCACCACCCCCACGCGCTGCTGCCCATCGACATCCACTA
CAACAAGCTGCTGCACTGGCTGGTCGACCGCCGCGCCGTCCCGCCCAAAT
GGGCGCTGCATCTCTCCACCGCGCGCACCCTCACGCGCGCCGCCATCAAC
GCCACGCCGCCCGATCTGCAAACCGCGCTGCAGATCACCCCCCTCTCCGC
CGATGAGCACCTGCCCTACGCGACGGCGCGCACCTATCTGCGCCAGCTCG
TCGGCGAGCAGCCGCTGCCCGCGCCCGCGTCCGCGTCCGCGCCGCTACCC
GCGCGCGACAAGCAGCTGCTGTCCGGCGCGTACAAGTCGCCCGTGCTGCG
CGCCTGGGCCGCCGCCGTGTCGAGCTTCGAGGCGCGCGGCGTGCATCTAG
CCGACGCCGCGCAGCAGCTGGTGCGACGCGCCGACGTCGACGCGCCCGCG
CTCAAGGCCACCATCGCGCGGCTGGCGCGCACGCTGGCCGACGCCGCGCG
CCGCGAGTCGCAGCTCATCCGCGCCGCCGCTGACGCCGCCGCGCGCTTTG
ACGACGCGCTGTCGCGCCACGGCCTGCGCCGCGACGCCGGCGAGTTCGAC
GCGCAGCTCGCGGCTCAAGTGGCGGCGCAGCTGCCGACGCTGCTGCGCAC
CGCCGTGCTGTGCGCGCGTGAGCCGCGCTTCGAGCACGCCGTCGCGTACT
ACCGCGCGTTCTGCGCATATGTGCGCGGCGCCGACGCCGACGCCGGCGAT
GGCGATGGCGATGGCGACGGCGACGGCGACGGCGATGGCGATGGCGATGG
CGGCGAGGAGGACGTGTGCGCCGCGCTGCGCGAGGTGATGCGCGCCGATG
TTGATGTGCTCTTGGCGCCGCCGCTTGCGCGGCGCCGGGAGGCGCTCGGC
CACGCGCCAGACTGGGGTGATGGACCGGAGGCGGCGGCGGCGGATGGCGG
CGACGTGCAGGGGGATGTGGAGGGCGGCGGCGACGCGGACGTGGACTGGG
GCATCGAGGTAGGCGCGTCGGGAGTGGACGCGCAGCAGCCGACGAGCAGC
GAGGCGCCGCTGGAAGGCGGCGGCGGCGGCGACGACGACGACGACGCCAA
CGACGTCGGCGTGTCGCAGACGGCGGAGATCGACTGGAGCGCGGCAATGG
ATGTGGTACTCGACGAAGACGAAGACGGCGACGTCGGCGGTTACAAGGCC
ACACGCGACGCGCACAAGCAGGCGGCGCCCACGCTGTACGACGCGACGTT
CCGCGAGCGCTACGTGAACGACCTGGCCGAGCTGTGCGCCTTCCTGGCGC
AGCGGCTGGCCGAGCTGGCCGCAACGCACGGCGGCGGCGGCGGTGACGGC
GGCGGCGACGGCGCGCTGTGGCTGCAGCTGCGCGGCAGCGGCGGCGCGCC
GCCGGGCGTGGCGCGCGTGCAGCCGCACGACGTGCAGGCGATGGCGGCGG
CGGCGCACGACGCGCTGCGCGCCGTCAACGGGCGCGACGCGCGCGCCGTG
CTGGCGCTGCACAACAGCGCCGGCGCGCGCCATCGGCTGGGCGCGCACGT
GCTGGCGCTGCGGGTGCGCGCCGAGCGCGCGCAGGACGCGGTGCACGCGC
TGCGCGTGGCGCGCGCCGACGCGGCCGTGCAGCTGCGCGTGGAGAAGCGC
CGCTTGCAGACGCTGCGCGAGCAGACGGCGCGCCTCAAGGCGCACACCGA
GGCCGCGCTCGGCGCCTTGTATGGCGGCCGTCAGGTGCACATTGTCGGCG
AGATCAATGCGCTGCTTGCTGCCAATGATTCATCATGA
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Coding sequence (CDS) from alignment at tig00000905_pilon:140471..142258-

>Ggra3399.t1 ID=Ggra3399.t1|Name=Ggra3399.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1788bp|location=Sequence derived from alignment at tig00000905_pilon:140471..142258- (Gracilaria gracilis GNS1m male)
ATGAGCCGCGCCCACCACCCCCACGCGCTGCTGCCCATCGACATCCACTA
CAACAAGCTGCTGCACTGGCTGGTCGACCGCCGCGCCGTCCCGCCCAAAT
GGGCGCTGCATCTCTCCACCGCGCGCACCCTCACGCGCGCCGCCATCAAC
GCCACGCCGCCCGATCTGCAAACCGCGCTGCAGATCACCCCCCTCTCCGC
CGATGAGCACCTGCCCTACGCGACGGCGCGCACCTATCTGCGCCAGCTCG
TCGGCGAGCAGCCGCTGCCCGCGCCCGCGTCCGCGTCCGCGCCGCTACCC
GCGCGCGACAAGCAGCTGCTGTCCGGCGCGTACAAGTCGCCCGTGCTGCG
CGCCTGGGCCGCCGCCGTGTCGAGCTTCGAGGCGCGCGGCGTGCATCTAG
CCGACGCCGCGCAGCAGCTGGTGCGACGCGCCGACGTCGACGCGCCCGCG
CTCAAGGCCACCATCGCGCGGCTGGCGCGCACGCTGGCCGACGCCGCGCG
CCGCGAGTCGCAGCTCATCCGCGCCGCCGCTGACGCCGCCGCGCGCTTTG
ACGACGCGCTGTCGCGCCACGGCCTGCGCCGCGACGCCGGCGAGTTCGAC
GCGCAGCTCGCGGCTCAAGTGGCGGCGCAGCTGCCGACGCTGCTGCGCAC
CGCCGTGCTGTGCGCGCGTGAGCCGCGCTTCGAGCACGCCGTCGCGTACT
ACCGCGCGTTCTGCGCATATGTGCGCGGCGCCGACGCCGACGCCGGCGAT
GGCGATGGCGATGGCGACGGCGACGGCGACGGCGATGGCGATGGCGATGG
CGGCGAGGAGGACGTGTGCGCCGCGCTGCGCGAGGTGATGCGCGCCGATG
TTGATGTGCTCTTGGCGCCGCCGCTTGCGCGGCGCCGGGAGGCGCTCGGC
CACGCGCCAGACTGGGGTGATGGACCGGAGGCGGCGGCGGCGGATGGCGG
CGACGTGCAGGGGGATGTGGAGGGCGGCGGCGACGCGGACGTGGACTGGG
GCATCGAGGTAGGCGCGTCGGGAGTGGACGCGCAGCAGCCGACGAGCAGC
GAGGCGCCGCTGGAAGGCGGCGGCGGCGGCGACGACGACGACGACGCCAA
CGACGTCGGCGTGTCGCAGACGGCGGAGATCGACTGGAGCGCGGCAATGG
ATGTGGTACTCGACGAAGACGAAGACGGCGACGTCGGCGGTTACAAGGCC
ACACGCGACGCGCACAAGCAGGCGGCGCCCACGCTGTACGACGCGACGTT
CCGCGAGCGCTACGTGAACGACCTGGCCGAGCTGTGCGCCTTCCTGGCGC
AGCGGCTGGCCGAGCTGGCCGCAACGCACGGCGGCGGCGGCGGTGACGGC
GGCGGCGACGGCGCGCTGTGGCTGCAGCTGCGCGGCAGCGGCGGCGCGCC
GCCGGGCGTGGCGCGCGTGCAGCCGCACGACGTGCAGGCGATGGCGGCGG
CGGCGCACGACGCGCTGCGCGCCGTCAACGGGCGCGACGCGCGCGCCGTG
CTGGCGCTGCACAACAGCGCCGGCGCGCGCCATCGGCTGGGCGCGCACGT
GCTGGCGCTGCGGGTGCGCGCCGAGCGCGCGCAGGACGCGGTGCACGCGC
TGCGCGTGGCGCGCGCCGACGCGGCCGTGCAGCTGCGCGTGGAGAAGCGC
CGCTTGCAGACGCTGCGCGAGCAGACGGCGCGCCTCAAGGCGCACACCGA
GGCCGCGCTCGGCGCCTTGTATGGCGGCCGTCAGGTGCACATTGTCGGCG
AGATCAATGCGCTGCTTGCTGCCAATGATTCATCATGA
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