Ggra3397.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3397.t1
Unique NameGgra3397.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:115592..116302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3397Ggra3397Gracilaria gracilis GNS1m malegenetig00000905_pilon 115592..116302 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3397.t1.start1Ggra3397.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 115592..115594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3397.t1.CDS1Ggra3397.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 115592..116302 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3397.t1.exon1Ggra3397.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 115592..116302 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3397.t1.stop1Ggra3397.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 116300..116302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3397.t1Ggra3397.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 115592..116302 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3397.t1 ID=Ggra3397.t1|Name=Ggra3397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=237bp
MTGKCRLELPDEHSSSISALAIVSEYSDLTTQILTSNGTPPSEKRKTKWF
LGFRRKKKLAGISASSTTSSTIMNSPHVSDEMFCSRDESGNCVMRRLKSD
AVVGNLDVPAKRTLTEALKGSSVLSRVKEVRESICSYPFRPESIDFCVDV
PSGAFARCIEVSRHEFINCQLRVTFAGVDSAGQCSCISKIMLDAACSPFF
LAFNRKTEEGSGLFVGCGLADGKIAFLEMRQGLIGR*
back to top

spliced messenger RNA

>Ggra3397.t1 ID=Ggra3397.t1|Name=Ggra3397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000905_pilon:115592..116302+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGAAAATGTCGACTTGAACTTCCGGATGAACACTCTTCGTCTAT
TTCGGCTCTTGCCATTGTTTCTGAATACTCCGATTTGACAACCCAGATTC
TTACCAGCAATGGTACACCACCATCGGAAAAGAGGAAAACCAAGTGGTTT
CTTGGCTTCCGGCGGAAAAAGAAATTAGCTGGAATTTCAGCGTCGTCCAC
CACGTCTTCCACCATCATGAACTCGCCTCATGTTTCGGATGAGATGTTTT
GTTCAAGGGATGAATCTGGAAATTGTGTCATGAGACGCCTGAAATCTGAT
GCAGTAGTGGGAAATCTTGACGTCCCCGCCAAGCGCACGCTAACAGAAGC
CTTGAAGGGAAGCAGTGTGCTTTCCAGGGTGAAAGAAGTGCGCGAGAGTA
TCTGCTCGTATCCTTTCAGACCGGAATCAATAGATTTCTGCGTTGACGTA
CCCAGTGGTGCATTCGCCAGATGTATTGAAGTATCTAGGCACGAGTTCAT
CAACTGCCAACTGCGGGTAACCTTTGCAGGAGTTGACTCTGCGGGTCAGT
GTAGCTGTATTTCCAAAATCATGCTTGATGCAGCTTGCAGCCCTTTTTTC
TTGGCGTTCAATAGAAAGACTGAAGAGGGGAGTGGGCTTTTTGTTGGATG
TGGTCTTGCAGATGGCAAGATTGCATTCTTGGAAATGAGACAAGGCCTGA
TTGGACGATGA
back to top

protein sequence of Ggra3397.t1

>Ggra3397.t1 ID=Ggra3397.t1|Name=Ggra3397.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=237bp
MTGKCRLELPDEHSSSISALAIVSEYSDLTTQILTSNGTPPSEKRKTKWF
LGFRRKKKLAGISASSTTSSTIMNSPHVSDEMFCSRDESGNCVMRRLKSD
AVVGNLDVPAKRTLTEALKGSSVLSRVKEVRESICSYPFRPESIDFCVDV
PSGAFARCIEVSRHEFINCQLRVTFAGVDSAGQCSCISKIMLDAACSPFF
LAFNRKTEEGSGLFVGCGLADGKIAFLEMRQGLIGR*
back to top

mRNA from alignment at tig00000905_pilon:115592..116302+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3397.t1 ID=Ggra3397.t1|Name=Ggra3397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp|location=Sequence derived from alignment at tig00000905_pilon:115592..116302+ (Gracilaria gracilis GNS1m male)
ATGACAGGAAAATGTCGACTTGAACTTCCGGATGAACACTCTTCGTCTAT
TTCGGCTCTTGCCATTGTTTCTGAATACTCCGATTTGACAACCCAGATTC
TTACCAGCAATGGTACACCACCATCGGAAAAGAGGAAAACCAAGTGGTTT
CTTGGCTTCCGGCGGAAAAAGAAATTAGCTGGAATTTCAGCGTCGTCCAC
CACGTCTTCCACCATCATGAACTCGCCTCATGTTTCGGATGAGATGTTTT
GTTCAAGGGATGAATCTGGAAATTGTGTCATGAGACGCCTGAAATCTGAT
GCAGTAGTGGGAAATCTTGACGTCCCCGCCAAGCGCACGCTAACAGAAGC
CTTGAAGGGAAGCAGTGTGCTTTCCAGGGTGAAAGAAGTGCGCGAGAGTA
TCTGCTCGTATCCTTTCAGACCGGAATCAATAGATTTCTGCGTTGACGTA
CCCAGTGGTGCATTCGCCAGATGTATTGAAGTATCTAGGCACGAGTTCAT
CAACTGCCAACTGCGGGTAACCTTTGCAGGAGTTGACTCTGCGGGTCAGT
GTAGCTGTATTTCCAAAATCATGCTTGATGCAGCTTGCAGCCCTTTTTTC
TTGGCGTTCAATAGAAAGACTGAAGAGGGGAGTGGGCTTTTTGTTGGATG
TGGTCTTGCAGATGGCAAGATTGCATTCTTGGAAATGAGACAAGGCCTGA
TTGGACGATGA
back to top

Coding sequence (CDS) from alignment at tig00000905_pilon:115592..116302+

>Ggra3397.t1 ID=Ggra3397.t1|Name=Ggra3397.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=711bp|location=Sequence derived from alignment at tig00000905_pilon:115592..116302+ (Gracilaria gracilis GNS1m male)
ATGACAGGAAAATGTCGACTTGAACTTCCGGATGAACACTCTTCGTCTAT
TTCGGCTCTTGCCATTGTTTCTGAATACTCCGATTTGACAACCCAGATTC
TTACCAGCAATGGTACACCACCATCGGAAAAGAGGAAAACCAAGTGGTTT
CTTGGCTTCCGGCGGAAAAAGAAATTAGCTGGAATTTCAGCGTCGTCCAC
CACGTCTTCCACCATCATGAACTCGCCTCATGTTTCGGATGAGATGTTTT
GTTCAAGGGATGAATCTGGAAATTGTGTCATGAGACGCCTGAAATCTGAT
GCAGTAGTGGGAAATCTTGACGTCCCCGCCAAGCGCACGCTAACAGAAGC
CTTGAAGGGAAGCAGTGTGCTTTCCAGGGTGAAAGAAGTGCGCGAGAGTA
TCTGCTCGTATCCTTTCAGACCGGAATCAATAGATTTCTGCGTTGACGTA
CCCAGTGGTGCATTCGCCAGATGTATTGAAGTATCTAGGCACGAGTTCAT
CAACTGCCAACTGCGGGTAACCTTTGCAGGAGTTGACTCTGCGGGTCAGT
GTAGCTGTATTTCCAAAATCATGCTTGATGCAGCTTGCAGCCCTTTTTTC
TTGGCGTTCAATAGAAAGACTGAAGAGGGGAGTGGGCTTTTTGTTGGATG
TGGTCTTGCAGATGGCAAGATTGCATTCTTGGAAATGAGACAAGGCCTGA
TTGGACGATGA
back to top