Ggra3390.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3390.t1
Unique Name	Ggra3390.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	507

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000189_pilon	contig	tig00000189_pilon:194332..195852 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S258_30V6.2
Preferred name	TPC1
PFAMs	EF-hand_7,Ion_trans
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K16900
KEGG TC	1.A.1.11.13,1.A.1.11.26,1.A.1.11.30
GOs	GO:0000325,GO:0001508,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005245,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008324,GO:0009791,GO:0009845,GO:0009889,GO:0009987,GO:0010119,GO:0010565,GO:0010817,GO:0012505,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0019216,GO:0019217,GO:0019222,GO:0019722,GO:0019932,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022843,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0031090,GO:0031323,GO:0031326,GO:0032350,GO:0032501,GO:0032502,GO:0034220,GO:0035556,GO:0042304,GO:0042391,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046885,GO:0046890,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051899,GO:0055085,GO:0062012,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071944,GO:0072511,GO:0080090,GO:0080140,GO:0080141,GO:0086010,GO:0090351,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098805
Evalue	4.42e-51
EggNOG OGs	KOG2301@1\|root,KOG2301@2759\|Eukaryota,37IZH@33090\|Viridiplantae,3GG0M@35493\|Streptophyta
Description	Two pore calcium channel protein
COG category	PT
BRITE	ko00000,ko04040

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3390	Ggra3390	Gracilaria gracilis GNS1m male	gene	tig00000189_pilon 194332..195852 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3390.t1.start1	Ggra3390.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000189_pilon 194332..194334 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3390.t1.CDS1	Ggra3390.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000189_pilon 194332..195852 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3390.t1.exon1	Ggra3390.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000189_pilon 194332..195852 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3390.t1	Ggra3390.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000189_pilon 194332..195852 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000189_pilon:194332..195852+
coding sequence from alignment at tig00000189_pilon:194332..195852+

mRNA sequence

>Ggra3390.t1 ID=Ggra3390.t1|Name=Ggra3390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp
MSETEPLVSALSLHERAAWIVDETTRGAAIHNRAAIPLTRSTRDRYLFVE
NSRYIRQAAVLALILLSFFELPSYCSPHRECLSPDGSSLFLSGVPYMSPL
TQALVNVTLLAILIFFFVYDALYLPDASLHVFPHGLQFLFGALIMDVLYV
AYFSGYPPIRFAPFLRVLLPLFYYHSLRECTFAIYAVLNPFFDIVFIVAI
FTLVFGWIVTLVFHDVPEADRYFGNLVTGLYSAFTSLTTADWPMQIMAVL
DVSRPSSLLFLAFILIGVLMLLNVLLAVVYNAYTGHMEELVVSKLQARRN
SLSLAYDVLIEDDGVASLPDVKLLFDELRKNKKHSHIDDEQAQYLFTALD
SDGDETINREEFLGIVDALQLKFVLELESISPAERFFPTLYETESWKRLA
KYVRSTSFIYVMDVFMIANVAVVVFESTMDLREKDTPQSVLFFAGIECAF
SFVYIMEMLLKTMSQGFDRYWRDYGNRFDFVVTWLLLGAAIYTLFPYTEN
DRTIVRY

spliced messenger RNA

>Ggra3390.t1 ID=Ggra3390.t1|Name=Ggra3390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000189_pilon:194332..195852+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAGACCGAACCGCTTGTTTCAGCGCTCAGCCTTCATGAGCGAGC
CGCTTGGATCGTCGATGAGACTACGCGAGGTGCTGCTATCCATAATAGAG
CCGCTATCCCGCTCACACGGTCAACCAGGGATCGGTATTTGTTTGTTGAG
AACTCGCGCTACATTCGGCAGGCCGCTGTTCTCGCGTTGATACTTTTGTC
TTTCTTTGAGTTGCCATCGTATTGTTCGCCCCACCGAGAATGCCTTTCCC
CAGACGGTTCCTCCCTGTTTCTGTCCGGCGTTCCATATATGTCGCCTTTG
ACACAAGCTCTTGTCAACGTGACGCTGTTGGCAATACTGATCTTCTTTTT
CGTTTACGACGCCTTGTACTTGCCGGATGCCTCGCTTCATGTGTTTCCGC
ACGGTTTACAATTTCTCTTCGGTGCACTGATAATGGATGTACTCTATGTT
GCCTACTTCTCTGGTTATCCGCCTATACGCTTTGCGCCATTTCTAAGGGT
CCTCTTGCCCCTTTTCTACTATCATTCGCTGCGAGAATGTACCTTTGCCA
TCTATGCCGTTCTCAACCCATTCTTTGACATTGTCTTTATTGTTGCGATC
TTCACACTCGTGTTTGGTTGGATTGTTACTTTAGTATTTCATGATGTCCC
GGAAGCTGACCGATACTTTGGAAACCTTGTCACAGGGTTATACTCCGCCT
TTACCTCGCTGACTACGGCTGATTGGCCCATGCAGATCATGGCCGTTCTA
GATGTATCTCGTCCATCATCTTTGCTCTTTCTTGCTTTCATTCTTATTGG
AGTGCTTATGCTGTTGAACGTATTACTGGCCGTTGTTTACAATGCATACA
CCGGTCATATGGAAGAGTTAGTCGTCTCTAAATTACAAGCTCGACGCAAT
AGTCTTAGTTTGGCATACGATGTGCTCATAGAAGACGATGGTGTGGCTAG
CCTACCTGACGTTAAGCTACTGTTTGATGAACTGCGGAAGAACAAAAAGC
ATAGTCACATTGATGATGAACAAGCACAATATCTGTTCACAGCGCTTGAC
AGTGATGGTGATGAAACCATCAATCGGGAAGAATTCCTCGGTATAGTAGA
CGCTCTTCAGCTTAAGTTTGTTTTGGAGTTGGAGAGCATTTCCCCAGCGG
AACGTTTCTTTCCGACACTGTACGAGACAGAATCCTGGAAGCGACTGGCC
AAATATGTGCGATCAACGTCGTTTATTTATGTCATGGACGTGTTCATGAT
TGCGAATGTGGCAGTGGTTGTCTTCGAAAGCACAATGGATCTGAGAGAGA
AAGACACTCCTCAGAGTGTTCTATTCTTCGCCGGAATAGAGTGTGCCTTT
TCTTTCGTGTACATTATGGAAATGTTGCTCAAGACAATGAGTCAAGGTTT
CGATCGATATTGGCGTGACTATGGTAATCGATTCGACTTTGTTGTGACTT
GGCTTTTACTTGGAGCGGCCATTTATACGCTTTTCCCGTACACAGAAAAC
GATCGAACCATTGTTCGGTAC

protein sequence of Ggra3390.t1

>Ggra3390.t1 ID=Ggra3390.t1|Name=Ggra3390.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=507bp
MSETEPLVSALSLHERAAWIVDETTRGAAIHNRAAIPLTRSTRDRYLFVE
NSRYIRQAAVLALILLSFFELPSYCSPHRECLSPDGSSLFLSGVPYMSPL
TQALVNVTLLAILIFFFVYDALYLPDASLHVFPHGLQFLFGALIMDVLYV
AYFSGYPPIRFAPFLRVLLPLFYYHSLRECTFAIYAVLNPFFDIVFIVAI
FTLVFGWIVTLVFHDVPEADRYFGNLVTGLYSAFTSLTTADWPMQIMAVL
DVSRPSSLLFLAFILIGVLMLLNVLLAVVYNAYTGHMEELVVSKLQARRN
SLSLAYDVLIEDDGVASLPDVKLLFDELRKNKKHSHIDDEQAQYLFTALD
SDGDETINREEFLGIVDALQLKFVLELESISPAERFFPTLYETESWKRLA
KYVRSTSFIYVMDVFMIANVAVVVFESTMDLREKDTPQSVLFFAGIECAF
SFVYIMEMLLKTMSQGFDRYWRDYGNRFDFVVTWLLLGAAIYTLFPYTEN
DRTIVRY

mRNA from alignment at tig00000189_pilon:194332..195852+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3390.t1 ID=Ggra3390.t1|Name=Ggra3390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000189_pilon:194332..195852+ (Gracilaria gracilis GNS1m male)
ATGAGCGAGACCGAACCGCTTGTTTCAGCGCTCAGCCTTCATGAGCGAGC
CGCTTGGATCGTCGATGAGACTACGCGAGGTGCTGCTATCCATAATAGAG
CCGCTATCCCGCTCACACGGTCAACCAGGGATCGGTATTTGTTTGTTGAG
AACTCGCGCTACATTCGGCAGGCCGCTGTTCTCGCGTTGATACTTTTGTC
TTTCTTTGAGTTGCCATCGTATTGTTCGCCCCACCGAGAATGCCTTTCCC
CAGACGGTTCCTCCCTGTTTCTGTCCGGCGTTCCATATATGTCGCCTTTG
ACACAAGCTCTTGTCAACGTGACGCTGTTGGCAATACTGATCTTCTTTTT
CGTTTACGACGCCTTGTACTTGCCGGATGCCTCGCTTCATGTGTTTCCGC
ACGGTTTACAATTTCTCTTCGGTGCACTGATAATGGATGTACTCTATGTT
GCCTACTTCTCTGGTTATCCGCCTATACGCTTTGCGCCATTTCTAAGGGT
CCTCTTGCCCCTTTTCTACTATCATTCGCTGCGAGAATGTACCTTTGCCA
TCTATGCCGTTCTCAACCCATTCTTTGACATTGTCTTTATTGTTGCGATC
TTCACACTCGTGTTTGGTTGGATTGTTACTTTAGTATTTCATGATGTCCC
GGAAGCTGACCGATACTTTGGAAACCTTGTCACAGGGTTATACTCCGCCT
TTACCTCGCTGACTACGGCTGATTGGCCCATGCAGATCATGGCCGTTCTA
GATGTATCTCGTCCATCATCTTTGCTCTTTCTTGCTTTCATTCTTATTGG
AGTGCTTATGCTGTTGAACGTATTACTGGCCGTTGTTTACAATGCATACA
CCGGTCATATGGAAGAGTTAGTCGTCTCTAAATTACAAGCTCGACGCAAT
AGTCTTAGTTTGGCATACGATGTGCTCATAGAAGACGATGGTGTGGCTAG
CCTACCTGACGTTAAGCTACTGTTTGATGAACTGCGGAAGAACAAAAAGC
ATAGTCACATTGATGATGAACAAGCACAATATCTGTTCACAGCGCTTGAC
AGTGATGGTGATGAAACCATCAATCGGGAAGAATTCCTCGGTATAGTAGA
CGCTCTTCAGCTTAAGTTTGTTTTGGAGTTGGAGAGCATTTCCCCAGCGG
AACGTTTCTTTCCGACACTGTACGAGACAGAATCCTGGAAGCGACTGGCC
AAATATGTGCGATCAACGTCGTTTATTTATGTCATGGACGTGTTCATGAT
TGCGAATGTGGCAGTGGTTGTCTTCGAAAGCACAATGGATCTGAGAGAGA
AAGACACTCCTCAGAGTGTTCTATTCTTCGCCGGAATAGAGTGTGCCTTT
TCTTTCGTGTACATTATGGAAATGTTGCTCAAGACAATGAGTCAAGGTTT
CGATCGATATTGGCGTGACTATGGTAATCGATTCGACTTTGTTGTGACTT
GGCTTTTACTTGGAGCGGCCATTTATACGCTTTTCCCGTACACAGAAAAC
GATCGAACCATTGTTCGGTAC

Coding sequence (CDS) from alignment at tig00000189_pilon:194332..195852+

>Ggra3390.t1 ID=Ggra3390.t1|Name=Ggra3390.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1521bp|location=Sequence derived from alignment at tig00000189_pilon:194332..195852+ (Gracilaria gracilis GNS1m male)
ATGAGCGAGACCGAACCGCTTGTTTCAGCGCTCAGCCTTCATGAGCGAGC
CGCTTGGATCGTCGATGAGACTACGCGAGGTGCTGCTATCCATAATAGAG
CCGCTATCCCGCTCACACGGTCAACCAGGGATCGGTATTTGTTTGTTGAG
AACTCGCGCTACATTCGGCAGGCCGCTGTTCTCGCGTTGATACTTTTGTC
TTTCTTTGAGTTGCCATCGTATTGTTCGCCCCACCGAGAATGCCTTTCCC
CAGACGGTTCCTCCCTGTTTCTGTCCGGCGTTCCATATATGTCGCCTTTG
ACACAAGCTCTTGTCAACGTGACGCTGTTGGCAATACTGATCTTCTTTTT
CGTTTACGACGCCTTGTACTTGCCGGATGCCTCGCTTCATGTGTTTCCGC
ACGGTTTACAATTTCTCTTCGGTGCACTGATAATGGATGTACTCTATGTT
GCCTACTTCTCTGGTTATCCGCCTATACGCTTTGCGCCATTTCTAAGGGT
CCTCTTGCCCCTTTTCTACTATCATTCGCTGCGAGAATGTACCTTTGCCA
TCTATGCCGTTCTCAACCCATTCTTTGACATTGTCTTTATTGTTGCGATC
TTCACACTCGTGTTTGGTTGGATTGTTACTTTAGTATTTCATGATGTCCC
GGAAGCTGACCGATACTTTGGAAACCTTGTCACAGGGTTATACTCCGCCT
TTACCTCGCTGACTACGGCTGATTGGCCCATGCAGATCATGGCCGTTCTA
GATGTATCTCGTCCATCATCTTTGCTCTTTCTTGCTTTCATTCTTATTGG
AGTGCTTATGCTGTTGAACGTATTACTGGCCGTTGTTTACAATGCATACA
CCGGTCATATGGAAGAGTTAGTCGTCTCTAAATTACAAGCTCGACGCAAT
AGTCTTAGTTTGGCATACGATGTGCTCATAGAAGACGATGGTGTGGCTAG
CCTACCTGACGTTAAGCTACTGTTTGATGAACTGCGGAAGAACAAAAAGC
ATAGTCACATTGATGATGAACAAGCACAATATCTGTTCACAGCGCTTGAC
AGTGATGGTGATGAAACCATCAATCGGGAAGAATTCCTCGGTATAGTAGA
CGCTCTTCAGCTTAAGTTTGTTTTGGAGTTGGAGAGCATTTCCCCAGCGG
AACGTTTCTTTCCGACACTGTACGAGACAGAATCCTGGAAGCGACTGGCC
AAATATGTGCGATCAACGTCGTTTATTTATGTCATGGACGTGTTCATGAT
TGCGAATGTGGCAGTGGTTGTCTTCGAAAGCACAATGGATCTGAGAGAGA
AAGACACTCCTCAGAGTGTTCTATTCTTCGCCGGAATAGAGTGTGCCTTT
TCTTTCGTGTACATTATGGAAATGTTGCTCAAGACAATGAGTCAAGGTTT
CGATCGATATTGGCGTGACTATGGTAATCGATTCGACTTTGTTGTGACTT
GGCTTTTACTTGGAGCGGCCATTTATACGCTTTTCCCGTACACAGAAAAC
GATCGAACCATTGTTCGGTAC