Ggra3386.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3386.t2
Unique NameGgra3386.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length88
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:187104..187779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3386Ggra3386Gracilaria gracilis GNS1m malegenetig00000189_pilon 187104..187779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3386.t2Ggra3386.t2Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 187104..187779 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3386.t2.stop1Ggra3386.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 187104..187106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3386.t2.CDS1Ggra3386.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 187104..187112 -
Ggra3386.t2.CDS2Ggra3386.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000189_pilon 187345..187440 -
Ggra3386.t2.CDS3Ggra3386.t2.CDS3Gracilaria gracilis GNS1m maleCDStig00000189_pilon 187621..187779 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3386.t2.exon1Ggra3386.t2.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 187104..187112 -
Ggra3386.t2.exon2Ggra3386.t2.exon2Gracilaria gracilis GNS1m maleexontig00000189_pilon 187345..187440 -
Ggra3386.t2.exon3Ggra3386.t2.exon3Gracilaria gracilis GNS1m maleexontig00000189_pilon 187621..187779 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3386.t2.intron1Ggra3386.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000189_pilon 187113..187344 -
Ggra3386.t2.intron2Ggra3386.t2.intron2Gracilaria gracilis GNS1m maleintrontig00000189_pilon 187441..187620 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3386.t2.start1Ggra3386.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 187777..187779 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3386.t2 ID=Ggra3386.t2|Name=Ggra3386.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=88bp
LTKRGVVQRCKDLESGRALRCDCTITQPACLIHAVLPNAQVCSAPSRLGY
DLKLFRLVFDVNDYVTACLTVLEFSRRSSWLCLLILL*
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spliced messenger RNA

>Ggra3386.t2 ID=Ggra3386.t2|Name=Ggra3386.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp|location=Sequence derived from alignment at tig00000189_pilon:187104..187779- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGACCAAGAGGGGCGTCGTGCAGAGATGTAAGGATCTGGAGAGTGGACG
CGCCCTAAGGTGTGATTGTACCATAACCCAACCAGCTTGTCTAATTCATG
CCGTACTACCAAATGCACAAGTGTGTTCAGCACCTTCGCGGCTGGGCTAT
GATTTGAAGTTGTTCAGATTAGTATTCGATGTGAATGATTATGTCACCGC
TTGTTTGACAGTTCTCGAGTTCTCAAGAAGAAGTTCGTGGCTCTGCCTGT
TGATTCTGCTTTAG
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protein sequence of Ggra3386.t2

>Ggra3386.t2 ID=Ggra3386.t2|Name=Ggra3386.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=88bp
LTKRGVVQRCKDLESGRALRCDCTITQPACLIHAVLPNAQVCSAPSRLGY
DLKLFRLVFDVNDYVTACLTVLEFSRRSSWLCLLILL*
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mRNA from alignment at tig00000189_pilon:187104..187779-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3386.t2 ID=Ggra3386.t2|Name=Ggra3386.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=676bp|location=Sequence derived from alignment at tig00000189_pilon:187104..187779- (Gracilaria gracilis GNS1m male)
TTGACCAAGAGGGGCGTCGTGCAGAGATGTAAGGATCTGGAGAGTGGACG
CGCCCTAAGGTGTGATTGTACCATAACCCAACCAGCTTGTCTAATTCATG
CCGTACTACCAAATGCACAAGTGTGTTCAGCACCTTCGCGGCTGGGCTAT
GATTTGAAGGTAAGGCACTTTTTCCCGAAGCGGTCCAGAGATGATCGTAA
TTTTGAGAATTGCCTTCTGCGAGCTTCAAGCGATGTGGAATTGCCCAACG
AGGCGTAATGGATCAACCAACTGAGGACTGTCTTATTTCGTTGCTCATCA
CACGGAACACAATCTGACGTTTCTACTTTTTCATTGCAGTTGTTCAGATT
AGTATTCGATGTGAATGATTATGTCACCGCTTGTTTGACAGTTCTCGAGT
TCTCAAGAAGAAGTTCGTGGCTCTGCCTGTTGATTGTAAGTTTCACCTCG
TCTTCTTAGTTCAGTCAATGTCAGTGGATGAATTCTTCAGACAATATATG
CTTTATCTCTTTACTTTGATCCTAGCAGCGCTAAAAGCCTGTGTGGATAC
CACTCCGCTTAATTTCTGATGACATTGGCTGTTCTCAATCACATCTATTT
GGCTTTGAGCACTTCAAGCTTTGAGCATAGTTCTAACTAACGAATTCTTG
TTCATTTGTGTCAGAAGCTGCTTTAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:187104..187779-

>Ggra3386.t2 ID=Ggra3386.t2|Name=Ggra3386.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=264bp|location=Sequence derived from alignment at tig00000189_pilon:187104..187779- (Gracilaria gracilis GNS1m male)
TTGACCAAGAGGGGCGTCGTGCAGAGATGTAAGGATCTGGAGAGTGGACG
CGCCCTAAGGTGTGATTGTACCATAACCCAACCAGCTTGTCTAATTCATG
CCGTACTACCAAATGCACAAGTGTGTTCAGCACCTTCGCGGCTGGGCTAT
GATTTGAAGTTGTTCAGATTAGTATTCGATGTGAATGATTATGTCACCGC
TTGTTTGACAGTTCTCGAGTTCTCAAGAAGAAGTTCGTGGCTCTGCCTGT
TGATTCTGCTTTAG
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