Ggra3384.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3384.t1
Unique NameGgra3384.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:183551..184588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5297.GMQ_15201T0
Preferred nameLAS1
PFAMsLas1
Max annot lvl4751|Fungi
KEGG koko:K16912
GOsGO:0000228,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000785,GO:0000790,GO:0000792,GO:0000922,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005730,GO:0005737,GO:0005739,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015630,GO:0016043,GO:0016070,GO:0016072,GO:0016458,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0022613,GO:0030684,GO:0030687,GO:0030702,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0040029,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090730,GO:1901360,GO:1902494,GO:1902555,GO:1902679,GO:1902911,GO:1903506,GO:1903507,GO:1905348,GO:1905354,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Evalue4.08e-22
EggNOG OGsKOG2425@1|root,KOG2425@2759|Eukaryota,38EJV@33154|Opisthokonta,3P2TE@4751|Fungi,3V1NI@5204|Basidiomycota,2YEG5@29000|Pucciniomycotina
DescriptionLas1-like
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3384Ggra3384Gracilaria gracilis GNS1m malegenetig00000189_pilon 183551..184588 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3384.t1.stop1Ggra3384.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 183551..183553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3384.t1.CDS1Ggra3384.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 183551..184588 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3384.t1.exon1Ggra3384.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 183551..184588 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3384.t1.start1Ggra3384.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 184586..184588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3384.t1Ggra3384.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 183551..184588 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3384.t1 ID=Ggra3384.t1|Name=Ggra3384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=346bp
MGLLPDGTRVLPWANWPEWLELKDMLTVGEIEQAKARAALYQVRRRGSVP
ISVLSSVALASQLKNPSPDPYTQRLGLSMAITRLVNGLTDRIQPRGQGAS
ARSVHKLAMELGLPLTLVDIRHQSCHNLLPRLSALESGAKQALFWLEQFY
WKPQHLNLMYHLPKSLVDLKHVFQNSTEQTLEGEGFESTLLGLNCLSSQD
HADSPIVNKMRQMTKRLKDRRKLSISQAPIGKGRSGTKRWRRCENPEVWK
TLSLGLIPGQKRPPCLKKINFWSESSSHTRENPHDAPRDESTPTVSGDDM
GARKSHEESFRRRKLNRTTEEDRTITTLTNHFRSLVSNQPANTTI*
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spliced messenger RNA

>Ggra3384.t1 ID=Ggra3384.t1|Name=Ggra3384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000189_pilon:183551..184588- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTATTGCCTGATGGTACTCGCGTCTTGCCATGGGCAAATTGGCC
AGAATGGTTGGAACTGAAAGACATGCTAACCGTTGGCGAAATAGAACAAG
CCAAGGCTAGAGCTGCGCTGTACCAGGTGAGACGCCGGGGATCAGTTCCG
ATTTCAGTTCTTTCAAGTGTTGCCTTGGCCTCTCAACTGAAGAACCCTTC
CCCCGACCCCTACACTCAAAGACTGGGACTTTCCATGGCAATCACGAGGC
TTGTGAACGGGTTAACGGATCGCATTCAACCTCGAGGACAAGGAGCTTCG
GCAAGAAGCGTCCATAAGCTGGCTATGGAGCTAGGCTTGCCCTTGACCCT
TGTCGATATTCGCCATCAATCATGTCACAATCTGTTGCCAAGGCTGTCTG
CTCTTGAATCAGGTGCAAAGCAAGCTCTTTTCTGGCTTGAACAGTTCTAT
TGGAAGCCCCAGCATTTGAATCTTATGTATCATTTACCAAAATCACTTGT
AGACCTTAAGCATGTGTTCCAAAACAGTACGGAACAAACACTAGAGGGTG
AAGGATTTGAGTCGACATTGCTGGGATTGAACTGCTTGAGTTCACAAGAT
CATGCCGATAGTCCTATTGTTAATAAGATGAGGCAAATGACAAAGAGACT
CAAGGACAGACGAAAGCTGTCCATAAGCCAAGCGCCAATTGGTAAAGGAA
GATCTGGAACAAAACGGTGGAGACGATGTGAGAACCCTGAAGTATGGAAA
ACCCTTTCTTTAGGTCTTATTCCTGGACAGAAAAGACCACCCTGTTTAAA
GAAGATCAACTTCTGGTCGGAATCGTCGTCACACACAAGAGAGAATCCAC
ATGATGCGCCTCGTGATGAAAGTACACCTACAGTATCAGGAGACGATATG
GGAGCCCGAAAATCTCATGAAGAATCATTTCGACGGCGAAAGTTGAATCG
AACAACAGAGGAAGACAGAACGATAACAACCTTAACAAATCATTTTCGAA
GTTTGGTTTCAAACCAACCTGCCAACACTACCATTTGA
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protein sequence of Ggra3384.t1

>Ggra3384.t1 ID=Ggra3384.t1|Name=Ggra3384.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=346bp
MGLLPDGTRVLPWANWPEWLELKDMLTVGEIEQAKARAALYQVRRRGSVP
ISVLSSVALASQLKNPSPDPYTQRLGLSMAITRLVNGLTDRIQPRGQGAS
ARSVHKLAMELGLPLTLVDIRHQSCHNLLPRLSALESGAKQALFWLEQFY
WKPQHLNLMYHLPKSLVDLKHVFQNSTEQTLEGEGFESTLLGLNCLSSQD
HADSPIVNKMRQMTKRLKDRRKLSISQAPIGKGRSGTKRWRRCENPEVWK
TLSLGLIPGQKRPPCLKKINFWSESSSHTRENPHDAPRDESTPTVSGDDM
GARKSHEESFRRRKLNRTTEEDRTITTLTNHFRSLVSNQPANTTI*
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mRNA from alignment at tig00000189_pilon:183551..184588-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3384.t1 ID=Ggra3384.t1|Name=Ggra3384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000189_pilon:183551..184588- (Gracilaria gracilis GNS1m male)
ATGGGACTATTGCCTGATGGTACTCGCGTCTTGCCATGGGCAAATTGGCC
AGAATGGTTGGAACTGAAAGACATGCTAACCGTTGGCGAAATAGAACAAG
CCAAGGCTAGAGCTGCGCTGTACCAGGTGAGACGCCGGGGATCAGTTCCG
ATTTCAGTTCTTTCAAGTGTTGCCTTGGCCTCTCAACTGAAGAACCCTTC
CCCCGACCCCTACACTCAAAGACTGGGACTTTCCATGGCAATCACGAGGC
TTGTGAACGGGTTAACGGATCGCATTCAACCTCGAGGACAAGGAGCTTCG
GCAAGAAGCGTCCATAAGCTGGCTATGGAGCTAGGCTTGCCCTTGACCCT
TGTCGATATTCGCCATCAATCATGTCACAATCTGTTGCCAAGGCTGTCTG
CTCTTGAATCAGGTGCAAAGCAAGCTCTTTTCTGGCTTGAACAGTTCTAT
TGGAAGCCCCAGCATTTGAATCTTATGTATCATTTACCAAAATCACTTGT
AGACCTTAAGCATGTGTTCCAAAACAGTACGGAACAAACACTAGAGGGTG
AAGGATTTGAGTCGACATTGCTGGGATTGAACTGCTTGAGTTCACAAGAT
CATGCCGATAGTCCTATTGTTAATAAGATGAGGCAAATGACAAAGAGACT
CAAGGACAGACGAAAGCTGTCCATAAGCCAAGCGCCAATTGGTAAAGGAA
GATCTGGAACAAAACGGTGGAGACGATGTGAGAACCCTGAAGTATGGAAA
ACCCTTTCTTTAGGTCTTATTCCTGGACAGAAAAGACCACCCTGTTTAAA
GAAGATCAACTTCTGGTCGGAATCGTCGTCACACACAAGAGAGAATCCAC
ATGATGCGCCTCGTGATGAAAGTACACCTACAGTATCAGGAGACGATATG
GGAGCCCGAAAATCTCATGAAGAATCATTTCGACGGCGAAAGTTGAATCG
AACAACAGAGGAAGACAGAACGATAACAACCTTAACAAATCATTTTCGAA
GTTTGGTTTCAAACCAACCTGCCAACACTACCATTTGA
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Coding sequence (CDS) from alignment at tig00000189_pilon:183551..184588-

>Ggra3384.t1 ID=Ggra3384.t1|Name=Ggra3384.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1038bp|location=Sequence derived from alignment at tig00000189_pilon:183551..184588- (Gracilaria gracilis GNS1m male)
ATGGGACTATTGCCTGATGGTACTCGCGTCTTGCCATGGGCAAATTGGCC
AGAATGGTTGGAACTGAAAGACATGCTAACCGTTGGCGAAATAGAACAAG
CCAAGGCTAGAGCTGCGCTGTACCAGGTGAGACGCCGGGGATCAGTTCCG
ATTTCAGTTCTTTCAAGTGTTGCCTTGGCCTCTCAACTGAAGAACCCTTC
CCCCGACCCCTACACTCAAAGACTGGGACTTTCCATGGCAATCACGAGGC
TTGTGAACGGGTTAACGGATCGCATTCAACCTCGAGGACAAGGAGCTTCG
GCAAGAAGCGTCCATAAGCTGGCTATGGAGCTAGGCTTGCCCTTGACCCT
TGTCGATATTCGCCATCAATCATGTCACAATCTGTTGCCAAGGCTGTCTG
CTCTTGAATCAGGTGCAAAGCAAGCTCTTTTCTGGCTTGAACAGTTCTAT
TGGAAGCCCCAGCATTTGAATCTTATGTATCATTTACCAAAATCACTTGT
AGACCTTAAGCATGTGTTCCAAAACAGTACGGAACAAACACTAGAGGGTG
AAGGATTTGAGTCGACATTGCTGGGATTGAACTGCTTGAGTTCACAAGAT
CATGCCGATAGTCCTATTGTTAATAAGATGAGGCAAATGACAAAGAGACT
CAAGGACAGACGAAAGCTGTCCATAAGCCAAGCGCCAATTGGTAAAGGAA
GATCTGGAACAAAACGGTGGAGACGATGTGAGAACCCTGAAGTATGGAAA
ACCCTTTCTTTAGGTCTTATTCCTGGACAGAAAAGACCACCCTGTTTAAA
GAAGATCAACTTCTGGTCGGAATCGTCGTCACACACAAGAGAGAATCCAC
ATGATGCGCCTCGTGATGAAAGTACACCTACAGTATCAGGAGACGATATG
GGAGCCCGAAAATCTCATGAAGAATCATTTCGACGGCGAAAGTTGAATCG
AACAACAGAGGAAGACAGAACGATAACAACCTTAACAAATCATTTTCGAA
GTTTGGTTTCAAACCAACCTGCCAACACTACCATTTGA
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