Ggra3383.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3383.t1
Unique NameGgra3383.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length843
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:179642..182170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703578.1
PFAMsOxysterol_BP,PH
Max annot lvl2759|Eukaryota
KEGG koko:K20456
Evalue3.25e-136
EggNOG OGsKOG1737@1|root,KOG1737@2759|Eukaryota
Descriptionlipid transport
COG categoryO
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3383Ggra3383Gracilaria gracilis GNS1m malegenetig00000189_pilon 179642..182170 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3383.t1.start1Ggra3383.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 179642..179644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3383.t1.CDS1Ggra3383.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 179642..182170 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3383.t1.exon1Ggra3383.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 179642..182170 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3383.t1.stop1Ggra3383.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 182168..182170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3383.t1Ggra3383.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 179642..182170 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3383.t1 ID=Ggra3383.t1|Name=Ggra3383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp
MPHMPHIPHIPHMPRMKRILHRRRSSAGNTDAHVTLSLHKDDFHNLTATD
PGVPPQKTGTLLKFTNVIKGWKPRTFSLENGRLVYSSADSDEGDSPASSS
RNLLEKERSKKKRSKLRKFKRAFSREEKDRDFKGSINLQTAVITADESDI
CRFAIDVGHDVYHCKAETREERDDWVQVLNASNAYFRGLIQRAISRSQQQ
VSPPESPKGKFLQKLSGKTLNSVSPSLKPVSTSQTIPQISDDSEESVLED
DGLKEAEESRRALMNELQRVLGVWRKELLCSESLALGSEELLRILAYTFR
DLGTNDQSIAGDHIRETTKGLIDLTSWCLNVLQTNDEMFDRRLKADLTRL
MANQLPVFPQHVVPQAPEDRQKILDDSSDDEFVDALSRVASLRSSARLSG
MLAASYVPAPEPSLKAIQEEQILEQSEIGERMRAVQRIDTEILSLSVKGE
RASLPPLPPNREKPNVLTLLKDSVGKDLSRISFPVSLNEPLSFVQRLAED
IEYCELLDKGAKDPDPNRRLMYVATMVISHYSSTLGRIAKPFNPLLGETA
CVIRPKKGQGVRYVAEQVSHHPPISASYAEGSGASWKYYNAIEVRHKFWG
KSLEIIPTGLNHVEFPETGDHYVFNQITTCVHNIVIGRMWLDNYGEMEIV
NRTNGGRCIIDFSKTGWMSDSNSFGGITGTIFDAEGVPKIKIKGNWTKSV
YEDLGRRKRNVLWQAVERPPETLSQSYNMTKWAITLNAPVHDDERKVIAP
TDSRLRPDQRALENGKYEEAANLKSALEESQRNRRRQLDEAGVQWEPRWF
RKVVDEETGSTDYRYGGEYFERHSKGDWGDCTDIFAIDDAGP*
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spliced messenger RNA

>Ggra3383.t1 ID=Ggra3383.t1|Name=Ggra3383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2529bp|location=Sequence derived from alignment at tig00000189_pilon:179642..182170+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCACATGCCTCACATCCCCCACATCCCCCACATGCCGCGAATGAA
ACGCATCCTGCACCGCCGTCGTTCCTCGGCAGGCAACACCGACGCCCATG
TTACCTTGTCTCTTCACAAGGATGACTTCCATAACCTGACTGCCACCGAT
CCGGGCGTGCCGCCGCAGAAGACTGGCACCTTGCTCAAGTTCACCAACGT
CATTAAGGGCTGGAAACCGCGCACCTTCTCGCTCGAAAACGGCCGCCTTG
TATACTCTTCCGCTGACAGCGACGAAGGCGATTCTCCAGCCTCTTCCTCC
CGAAACTTGCTTGAGAAGGAGCGTTCCAAGAAAAAGCGTTCCAAGCTGCG
AAAATTCAAGCGTGCTTTTAGTCGCGAAGAGAAGGACCGCGATTTCAAGG
GTTCTATCAATTTGCAAACCGCCGTCATAACTGCCGACGAATCCGACATC
TGTCGCTTTGCAATCGACGTCGGACATGATGTGTACCACTGCAAGGCCGA
AACTAGAGAAGAACGCGATGATTGGGTCCAGGTTTTAAACGCTTCCAACG
CATACTTCCGCGGCCTTATTCAAAGAGCTATTTCTCGTTCTCAGCAGCAA
GTCAGCCCCCCCGAAAGCCCTAAAGGAAAGTTTCTGCAGAAACTCTCTGG
AAAAACGCTGAATTCTGTTTCTCCGTCATTGAAACCTGTCTCCACATCGC
AAACAATCCCTCAAATATCCGACGACAGCGAGGAGTCAGTTCTAGAAGAT
GACGGTCTAAAAGAGGCCGAAGAGAGCCGTCGAGCGCTAATGAACGAACT
GCAGCGCGTGCTTGGCGTTTGGAGAAAGGAACTGCTTTGCTCTGAATCCC
TGGCTTTAGGTAGTGAGGAACTTCTGAGAATCTTGGCTTATACATTTAGG
GACCTTGGTACTAACGACCAGAGCATCGCTGGTGATCACATCAGAGAAAC
CACAAAGGGCCTGATCGATCTCACCTCGTGGTGTCTGAATGTCTTGCAAA
CAAACGATGAAATGTTTGATAGACGTCTCAAAGCAGATCTTACCCGTCTT
ATGGCCAACCAGCTTCCAGTTTTCCCGCAACACGTTGTACCGCAAGCGCC
TGAGGATAGGCAGAAAATTTTGGACGACTCTAGCGATGATGAGTTTGTTG
ATGCTCTGTCACGAGTTGCAAGTCTGCGTAGCTCGGCCAGACTATCTGGA
ATGCTTGCGGCCTCGTATGTACCTGCTCCAGAACCTTCGCTCAAAGCAAT
TCAAGAAGAACAAATCCTGGAGCAAAGTGAGATCGGCGAACGGATGAGAG
CAGTCCAGCGCATTGACACAGAAATACTTTCTTTATCGGTGAAAGGGGAG
CGAGCATCTTTACCGCCACTTCCACCAAATAGGGAAAAACCGAATGTGCT
AACCCTCTTGAAAGATTCTGTCGGAAAAGACTTGTCTCGTATCAGTTTTC
CTGTCAGTCTCAACGAACCTCTTTCGTTTGTACAGCGTCTAGCGGAAGAT
ATTGAGTATTGTGAGTTGCTCGACAAAGGCGCGAAAGACCCTGACCCAAA
CCGAAGATTGATGTACGTTGCGACCATGGTAATATCCCACTACAGTTCCA
CCCTAGGACGGATTGCGAAGCCATTCAACCCTTTGCTAGGGGAAACTGCT
TGTGTTATTCGCCCAAAGAAGGGCCAAGGTGTACGGTATGTCGCCGAACA
AGTGAGTCATCATCCTCCTATTTCAGCCAGTTATGCGGAAGGCTCAGGCG
CGTCATGGAAGTACTACAACGCGATTGAAGTGAGACACAAATTTTGGGGT
AAGAGCTTGGAAATCATTCCTACAGGCTTGAACCATGTGGAGTTTCCCGA
AACCGGAGACCACTATGTGTTTAACCAAATCACTACATGTGTACACAACA
TCGTTATTGGAAGAATGTGGCTCGATAATTATGGAGAAATGGAAATCGTC
AACCGAACAAACGGTGGACGATGTATTATCGATTTTAGCAAAACAGGGTG
GATGAGCGATTCTAACTCATTCGGGGGGATAACCGGTACGATCTTTGACG
CTGAAGGGGTTCCAAAGATCAAGATTAAAGGCAACTGGACAAAGAGCGTG
TACGAGGACTTGGGTCGGCGGAAACGAAACGTCTTGTGGCAAGCGGTGGA
GCGACCACCAGAAACCTTGTCGCAATCGTACAACATGACAAAGTGGGCCA
TTACGCTCAATGCCCCTGTTCATGACGATGAAAGAAAGGTTATCGCTCCG
ACAGATAGCAGGTTGCGGCCTGACCAAAGAGCTCTTGAGAATGGCAAGTA
TGAAGAAGCAGCCAACCTCAAGAGCGCTCTTGAGGAGTCTCAGCGAAACC
GTCGCCGACAATTGGATGAAGCTGGTGTACAATGGGAACCTCGGTGGTTC
CGGAAGGTGGTGGATGAAGAGACGGGCTCCACAGATTACAGATACGGGGG
GGAGTATTTCGAGAGACACTCCAAAGGGGATTGGGGTGACTGCACTGACA
TCTTTGCGATAGACGACGCTGGGCCTTAG
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protein sequence of Ggra3383.t1

>Ggra3383.t1 ID=Ggra3383.t1|Name=Ggra3383.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=843bp
MPHMPHIPHIPHMPRMKRILHRRRSSAGNTDAHVTLSLHKDDFHNLTATD
PGVPPQKTGTLLKFTNVIKGWKPRTFSLENGRLVYSSADSDEGDSPASSS
RNLLEKERSKKKRSKLRKFKRAFSREEKDRDFKGSINLQTAVITADESDI
CRFAIDVGHDVYHCKAETREERDDWVQVLNASNAYFRGLIQRAISRSQQQ
VSPPESPKGKFLQKLSGKTLNSVSPSLKPVSTSQTIPQISDDSEESVLED
DGLKEAEESRRALMNELQRVLGVWRKELLCSESLALGSEELLRILAYTFR
DLGTNDQSIAGDHIRETTKGLIDLTSWCLNVLQTNDEMFDRRLKADLTRL
MANQLPVFPQHVVPQAPEDRQKILDDSSDDEFVDALSRVASLRSSARLSG
MLAASYVPAPEPSLKAIQEEQILEQSEIGERMRAVQRIDTEILSLSVKGE
RASLPPLPPNREKPNVLTLLKDSVGKDLSRISFPVSLNEPLSFVQRLAED
IEYCELLDKGAKDPDPNRRLMYVATMVISHYSSTLGRIAKPFNPLLGETA
CVIRPKKGQGVRYVAEQVSHHPPISASYAEGSGASWKYYNAIEVRHKFWG
KSLEIIPTGLNHVEFPETGDHYVFNQITTCVHNIVIGRMWLDNYGEMEIV
NRTNGGRCIIDFSKTGWMSDSNSFGGITGTIFDAEGVPKIKIKGNWTKSV
YEDLGRRKRNVLWQAVERPPETLSQSYNMTKWAITLNAPVHDDERKVIAP
TDSRLRPDQRALENGKYEEAANLKSALEESQRNRRRQLDEAGVQWEPRWF
RKVVDEETGSTDYRYGGEYFERHSKGDWGDCTDIFAIDDAGP*
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mRNA from alignment at tig00000189_pilon:179642..182170+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3383.t1 ID=Ggra3383.t1|Name=Ggra3383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2529bp|location=Sequence derived from alignment at tig00000189_pilon:179642..182170+ (Gracilaria gracilis GNS1m male)
ATGCCGCACATGCCTCACATCCCCCACATCCCCCACATGCCGCGAATGAA ACGCATCCTGCACCGCCGTCGTTCCTCGGCAGGCAACACCGACGCCCATG TTACCTTGTCTCTTCACAAGGATGACTTCCATAACCTGACTGCCACCGAT CCGGGCGTGCCGCCGCAGAAGACTGGCACCTTGCTCAAGTTCACCAACGT CATTAAGGGCTGGAAACCGCGCACCTTCTCGCTCGAAAACGGCCGCCTTG TATACTCTTCCGCTGACAGCGACGAAGGCGATTCTCCAGCCTCTTCCTCC CGAAACTTGCTTGAGAAGGAGCGTTCCAAGAAAAAGCGTTCCAAGCTGCG AAAATTCAAGCGTGCTTTTAGTCGCGAAGAGAAGGACCGCGATTTCAAGG GTTCTATCAATTTGCAAACCGCCGTCATAACTGCCGACGAATCCGACATC TGTCGCTTTGCAATCGACGTCGGACATGATGTGTACCACTGCAAGGCCGA AACTAGAGAAGAACGCGATGATTGGGTCCAGGTTTTAAACGCTTCCAACG CATACTTCCGCGGCCTTATTCAAAGAGCTATTTCTCGTTCTCAGCAGCAA GTCAGCCCCCCCGAAAGCCCTAAAGGAAAGTTTCTGCAGAAACTCTCTGG AAAAACGCTGAATTCTGTTTCTCCGTCATTGAAACCTGTCTCCACATCGC AAACAATCCCTCAAATATCCGACGACAGCGAGGAGTCAGTTCTAGAAGAT GACGGTCTAAAAGAGGCCGAAGAGAGCCGTCGAGCGCTAATGAACGAACT GCAGCGCGTGCTTGGCGTTTGGAGAAAGGAACTGCTTTGCTCTGAATCCC TGGCTTTAGGTAGTGAGGAACTTCTGAGAATCTTGGCTTATACATTTAGG GACCTTGGTACTAACGACCAGAGCATCGCTGGTGATCACATCAGAGAAAC CACAAAGGGCCTGATCGATCTCACCTCGTGGTGTCTGAATGTCTTGCAAA CAAACGATGAAATGTTTGATAGACGTCTCAAAGCAGATCTTACCCGTCTT ATGGCCAACCAGCTTCCAGTTTTCCCGCAACACGTTGTACCGCAAGCGCC TGAGGATAGGCAGAAAATTTTGGACGACTCTAGCGATGATGAGTTTGTTG ATGCTCTGTCACGAGTTGCAAGTCTGCGTAGCTCGGCCAGACTATCTGGA ATGCTTGCGGCCTCGTATGTACCTGCTCCAGAACCTTCGCTCAAAGCAAT TCAAGAAGAACAAATCCTGGAGCAAAGTGAGATCGGCGAACGGATGAGAG CAGTCCAGCGCATTGACACAGAAATACTTTCTTTATCGGTGAAAGGGGAG CGAGCATCTTTACCGCCACTTCCACCAAATAGGGAAAAACCGAATGTGCT AACCCTCTTGAAAGATTCTGTCGGAAAAGACTTGTCTCGTATCAGTTTTC CTGTCAGTCTCAACGAACCTCTTTCGTTTGTACAGCGTCTAGCGGAAGAT ATTGAGTATTGTGAGTTGCTCGACAAAGGCGCGAAAGACCCTGACCCAAA CCGAAGATTGATGTACGTTGCGACCATGGTAATATCCCACTACAGTTCCA CCCTAGGACGGATTGCGAAGCCATTCAACCCTTTGCTAGGGGAAACTGCT TGTGTTATTCGCCCAAAGAAGGGCCAAGGTGTACGGTATGTCGCCGAACA AGTGAGTCATCATCCTCCTATTTCAGCCAGTTATGCGGAAGGCTCAGGCG CGTCATGGAAGTACTACAACGCGATTGAAGTGAGACACAAATTTTGGGGT AAGAGCTTGGAAATCATTCCTACAGGCTTGAACCATGTGGAGTTTCCCGA AACCGGAGACCACTATGTGTTTAACCAAATCACTACATGTGTACACAACA TCGTTATTGGAAGAATGTGGCTCGATAATTATGGAGAAATGGAAATCGTC AACCGAACAAACGGTGGACGATGTATTATCGATTTTAGCAAAACAGGGTG GATGAGCGATTCTAACTCATTCGGGGGGATAACCGGTACGATCTTTGACG CTGAAGGGGTTCCAAAGATCAAGATTAAAGGCAACTGGACAAAGAGCGTG TACGAGGACTTGGGTCGGCGGAAACGAAACGTCTTGTGGCAAGCGGTGGA GCGACCACCAGAAACCTTGTCGCAATCGTACAACATGACAAAGTGGGCCA TTACGCTCAATGCCCCTGTTCATGACGATGAAAGAAAGGTTATCGCTCCG ACAGATAGCAGGTTGCGGCCTGACCAAAGAGCTCTTGAGAATGGCAAGTA TGAAGAAGCAGCCAACCTCAAGAGCGCTCTTGAGGAGTCTCAGCGAAACC GTCGCCGACAATTGGATGAAGCTGGTGTACAATGGGAACCTCGGTGGTTC CGGAAGGTGGTGGATGAAGAGACGGGCTCCACAGATTACAGATACGGGGG GGAGTATTTCGAGAGACACTCCAAAGGGGATTGGGGTGACTGCACTGACA TCTTTGCGATAGACGACGCTGGGCCTTAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:179642..182170+

>Ggra3383.t1 ID=Ggra3383.t1|Name=Ggra3383.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2529bp|location=Sequence derived from alignment at tig00000189_pilon:179642..182170+ (Gracilaria gracilis GNS1m male)
ATGCCGCACATGCCTCACATCCCCCACATCCCCCACATGCCGCGAATGAA
ACGCATCCTGCACCGCCGTCGTTCCTCGGCAGGCAACACCGACGCCCATG
TTACCTTGTCTCTTCACAAGGATGACTTCCATAACCTGACTGCCACCGAT
CCGGGCGTGCCGCCGCAGAAGACTGGCACCTTGCTCAAGTTCACCAACGT
CATTAAGGGCTGGAAACCGCGCACCTTCTCGCTCGAAAACGGCCGCCTTG
TATACTCTTCCGCTGACAGCGACGAAGGCGATTCTCCAGCCTCTTCCTCC
CGAAACTTGCTTGAGAAGGAGCGTTCCAAGAAAAAGCGTTCCAAGCTGCG
AAAATTCAAGCGTGCTTTTAGTCGCGAAGAGAAGGACCGCGATTTCAAGG
GTTCTATCAATTTGCAAACCGCCGTCATAACTGCCGACGAATCCGACATC
TGTCGCTTTGCAATCGACGTCGGACATGATGTGTACCACTGCAAGGCCGA
AACTAGAGAAGAACGCGATGATTGGGTCCAGGTTTTAAACGCTTCCAACG
CATACTTCCGCGGCCTTATTCAAAGAGCTATTTCTCGTTCTCAGCAGCAA
GTCAGCCCCCCCGAAAGCCCTAAAGGAAAGTTTCTGCAGAAACTCTCTGG
AAAAACGCTGAATTCTGTTTCTCCGTCATTGAAACCTGTCTCCACATCGC
AAACAATCCCTCAAATATCCGACGACAGCGAGGAGTCAGTTCTAGAAGAT
GACGGTCTAAAAGAGGCCGAAGAGAGCCGTCGAGCGCTAATGAACGAACT
GCAGCGCGTGCTTGGCGTTTGGAGAAAGGAACTGCTTTGCTCTGAATCCC
TGGCTTTAGGTAGTGAGGAACTTCTGAGAATCTTGGCTTATACATTTAGG
GACCTTGGTACTAACGACCAGAGCATCGCTGGTGATCACATCAGAGAAAC
CACAAAGGGCCTGATCGATCTCACCTCGTGGTGTCTGAATGTCTTGCAAA
CAAACGATGAAATGTTTGATAGACGTCTCAAAGCAGATCTTACCCGTCTT
ATGGCCAACCAGCTTCCAGTTTTCCCGCAACACGTTGTACCGCAAGCGCC
TGAGGATAGGCAGAAAATTTTGGACGACTCTAGCGATGATGAGTTTGTTG
ATGCTCTGTCACGAGTTGCAAGTCTGCGTAGCTCGGCCAGACTATCTGGA
ATGCTTGCGGCCTCGTATGTACCTGCTCCAGAACCTTCGCTCAAAGCAAT
TCAAGAAGAACAAATCCTGGAGCAAAGTGAGATCGGCGAACGGATGAGAG
CAGTCCAGCGCATTGACACAGAAATACTTTCTTTATCGGTGAAAGGGGAG
CGAGCATCTTTACCGCCACTTCCACCAAATAGGGAAAAACCGAATGTGCT
AACCCTCTTGAAAGATTCTGTCGGAAAAGACTTGTCTCGTATCAGTTTTC
CTGTCAGTCTCAACGAACCTCTTTCGTTTGTACAGCGTCTAGCGGAAGAT
ATTGAGTATTGTGAGTTGCTCGACAAAGGCGCGAAAGACCCTGACCCAAA
CCGAAGATTGATGTACGTTGCGACCATGGTAATATCCCACTACAGTTCCA
CCCTAGGACGGATTGCGAAGCCATTCAACCCTTTGCTAGGGGAAACTGCT
TGTGTTATTCGCCCAAAGAAGGGCCAAGGTGTACGGTATGTCGCCGAACA
AGTGAGTCATCATCCTCCTATTTCAGCCAGTTATGCGGAAGGCTCAGGCG
CGTCATGGAAGTACTACAACGCGATTGAAGTGAGACACAAATTTTGGGGT
AAGAGCTTGGAAATCATTCCTACAGGCTTGAACCATGTGGAGTTTCCCGA
AACCGGAGACCACTATGTGTTTAACCAAATCACTACATGTGTACACAACA
TCGTTATTGGAAGAATGTGGCTCGATAATTATGGAGAAATGGAAATCGTC
AACCGAACAAACGGTGGACGATGTATTATCGATTTTAGCAAAACAGGGTG
GATGAGCGATTCTAACTCATTCGGGGGGATAACCGGTACGATCTTTGACG
CTGAAGGGGTTCCAAAGATCAAGATTAAAGGCAACTGGACAAAGAGCGTG
TACGAGGACTTGGGTCGGCGGAAACGAAACGTCTTGTGGCAAGCGGTGGA
GCGACCACCAGAAACCTTGTCGCAATCGTACAACATGACAAAGTGGGCCA
TTACGCTCAATGCCCCTGTTCATGACGATGAAAGAAAGGTTATCGCTCCG
ACAGATAGCAGGTTGCGGCCTGACCAAAGAGCTCTTGAGAATGGCAAGTA
TGAAGAAGCAGCCAACCTCAAGAGCGCTCTTGAGGAGTCTCAGCGAAACC
GTCGCCGACAATTGGATGAAGCTGGTGTACAATGGGAACCTCGGTGGTTC
CGGAAGGTGGTGGATGAAGAGACGGGCTCCACAGATTACAGATACGGGGG
GGAGTATTTCGAGAGACACTCCAAAGGGGATTGGGGTGACTGCACTGACA
TCTTTGCGATAGACGACGCTGGGCCTTAG
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