Ggra3380.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3380.t1
Unique NameGgra3380.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length438
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:171488..173335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005644406.1
PFAMsBestrophin
Max annot lvl33090|Viridiplantae
Evalue1.98e-34
EggNOG OGsCOG3781@1|root,2RXRZ@2759|Eukaryota,381I8@33090|Viridiplantae
DescriptionBestrophin, RFP-TM, chloride channel
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3380Ggra3380Gracilaria gracilis GNS1m malegenetig00000189_pilon 171488..173335 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3380.t1.stop1Ggra3380.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 171488..171490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3380.t1.CDS1Ggra3380.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 171488..171657 -
Ggra3380.t1.CDS2Ggra3380.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000189_pilon 171784..171905 -
Ggra3380.t1.CDS3Ggra3380.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000189_pilon 171981..172016 -
Ggra3380.t1.CDS4Ggra3380.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000189_pilon 172142..172230 -
Ggra3380.t1.CDS5Ggra3380.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000189_pilon 172344..172683 -
Ggra3380.t1.CDS6Ggra3380.t1.CDS6Gracilaria gracilis GNS1m maleCDStig00000189_pilon 172779..173335 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3380.t1.exon1Ggra3380.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 171488..171657 -
Ggra3380.t1.exon2Ggra3380.t1.exon2Gracilaria gracilis GNS1m maleexontig00000189_pilon 171784..171905 -
Ggra3380.t1.exon3Ggra3380.t1.exon3Gracilaria gracilis GNS1m maleexontig00000189_pilon 171981..172016 -
Ggra3380.t1.exon4Ggra3380.t1.exon4Gracilaria gracilis GNS1m maleexontig00000189_pilon 172142..172230 -
Ggra3380.t1.exon5Ggra3380.t1.exon5Gracilaria gracilis GNS1m maleexontig00000189_pilon 172344..172683 -
Ggra3380.t1.exon6Ggra3380.t1.exon6Gracilaria gracilis GNS1m maleexontig00000189_pilon 172779..173335 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3380.t1.intron1Ggra3380.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000189_pilon 171658..171783 -
Ggra3380.t1.intron2Ggra3380.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000189_pilon 171906..171980 -
Ggra3380.t1.intron3Ggra3380.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000189_pilon 172017..172141 -
Ggra3380.t1.intron4Ggra3380.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000189_pilon 172231..172343 -
Ggra3380.t1.intron5Ggra3380.t1.intron5Gracilaria gracilis GNS1m maleintrontig00000189_pilon 172684..172778 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3380.t1.start1Ggra3380.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 173333..173335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3380.t1Ggra3380.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 171488..173335 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3380.t1 ID=Ggra3380.t1|Name=Ggra3380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp
MERDNSNQRTQEHHVRIQEPTLDTSSSSSSAADVQSLKSTASVHALDSHL
DHVSEASSLDAPPPNNAADETAFLNIITVHGERLEYTDHENEQAFKKNDS
KGENEPFFRRWILSVVRGRAMPVVPLLVSTCWAALAVVISWVSRRNYEPH
VNGDCRWWCTPLAVDGNALSYVGFALFLLTSFRVSEAYGRYMEAIRVWTG
IGGTVTSFAKYVVQAFPSGTFHRGDQERMLGFLAAFPVALKRQLRGEKDL
RELKSVLSTEDLAELQNAPNMPSHCLYVLSAYLLAAQRRENRLPQAFLVH
LIRWVADLAGAADTCMQIKTMPAPYSYISHLNTFLSLWLFFLPFALVETS
GWLTIAIVAFISYGLLGVVSNAAELEDPFGGDYNDLPLGKLSQSIQDDVS
MIYDQSRTAPRRTVVREVDDVELRDQHDYWLKTSNTT*
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spliced messenger RNA

>Ggra3380.t1 ID=Ggra3380.t1|Name=Ggra3380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00000189_pilon:171488..173335- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCGATAACAGTAATCAAAGAACACAAGAGCACCATGTTCGTAT
ACAAGAGCCTACTCTGGATACGTCATCTTCTTCATCCTCCGCCGCAGATG
TGCAGTCTCTGAAGTCCACGGCATCAGTCCATGCTCTGGACAGCCACCTC
GATCATGTATCAGAGGCTAGCAGTCTCGACGCCCCACCTCCGAACAATGC
AGCTGATGAAACTGCCTTTTTAAACATCATAACTGTACATGGTGAAAGGC
TCGAGTATACTGACCATGAAAACGAACAAGCATTCAAGAAGAACGACAGT
AAAGGGGAAAACGAGCCGTTTTTCCGTCGTTGGATACTTAGTGTCGTACG
TGGTCGAGCAATGCCTGTCGTTCCTCTGCTTGTGTCTACCTGTTGGGCTG
CTCTAGCAGTAGTGATATCATGGGTCTCCAGAAGGAATTATGAGCCCCAT
GTGAACGGAGATTGCAGATGGTGGTGTACCCCCTTAGCCGTCGATGGCAA
TGCGCTATCGTACGTAGGGTTTGCGCTCTTCTTGTTGACCAGTTTTAGAG
TCTCAGAAGCGTATGGTCGATACATGGAAGCCATTCGAGTCTGGACAGGA
ATTGGAGGCACGGTCACAAGCTTCGCAAAGTATGTTGTTCAGGCCTTTCC
ATCTGGTACGTTTCATCGTGGAGACCAGGAGCGTATGCTTGGATTCTTGG
CAGCCTTTCCCGTGGCTTTGAAAAGACAACTTCGAGGCGAAAAGGATTTG
CGGGAGCTAAAGAGTGTTTTGTCAACAGAGGACCTCGCTGAGCTCCAGAA
TGCGCCGAATATGCCTTCCCATTGCCTTTATGTTCTGTCAGCATATCTTC
TTGCAGCGCAACGACGCGAAAATAGGCTTCCTCAAGCGTTCCTTGTGCAT
TTGATTCGCTGGGTTGCAGATCTCGCCGGTGCCGCGGATACTTGTATGCA
GATTAAGACTATGCCTGCACCATATTCATATATAAGTCATTTGAACACCT
TTCTATCTCTCTGGCTCTTCTTTCTACCTTTTGCCCTAGTGGAAACTTCA
GGCTGGTTGACGATTGCCATTGTCGCCTTCATTTCTTATGGACTCTTAGG
AGTGGTTTCTAACGCGGCTGAACTCGAAGATCCATTTGGAGGCGACTATA
ATGATTTGCCGTTGGGCAAACTGTCGCAATCGATTCAAGATGATGTCTCA
ATGATCTACGACCAATCACGAACTGCCCCAAGAAGAACTGTTGTCCGTGA
AGTGGACGATGTTGAACTGCGCGACCAACACGACTATTGGCTCAAAACAA
GCAACACCACATAA
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protein sequence of Ggra3380.t1

>Ggra3380.t1 ID=Ggra3380.t1|Name=Ggra3380.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=438bp
MERDNSNQRTQEHHVRIQEPTLDTSSSSSSAADVQSLKSTASVHALDSHL
DHVSEASSLDAPPPNNAADETAFLNIITVHGERLEYTDHENEQAFKKNDS
KGENEPFFRRWILSVVRGRAMPVVPLLVSTCWAALAVVISWVSRRNYEPH
VNGDCRWWCTPLAVDGNALSYVGFALFLLTSFRVSEAYGRYMEAIRVWTG
IGGTVTSFAKYVVQAFPSGTFHRGDQERMLGFLAAFPVALKRQLRGEKDL
RELKSVLSTEDLAELQNAPNMPSHCLYVLSAYLLAAQRRENRLPQAFLVH
LIRWVADLAGAADTCMQIKTMPAPYSYISHLNTFLSLWLFFLPFALVETS
GWLTIAIVAFISYGLLGVVSNAAELEDPFGGDYNDLPLGKLSQSIQDDVS
MIYDQSRTAPRRTVVREVDDVELRDQHDYWLKTSNTT*
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mRNA from alignment at tig00000189_pilon:171488..173335-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3380.t1 ID=Ggra3380.t1|Name=Ggra3380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00000189_pilon:171488..173335- (Gracilaria gracilis GNS1m male)
ATGGAGCGCGATAACAGTAATCAAAGAACACAAGAGCACCATGTTCGTAT
ACAAGAGCCTACTCTGGATACGTCATCTTCTTCATCCTCCGCCGCAGATG
TGCAGTCTCTGAAGTCCACGGCATCAGTCCATGCTCTGGACAGCCACCTC
GATCATGTATCAGAGGCTAGCAGTCTCGACGCCCCACCTCCGAACAATGC
AGCTGATGAAACTGCCTTTTTAAACATCATAACTGTACATGGTGAAAGGC
TCGAGTATACTGACCATGAAAACGAACAAGCATTCAAGAAGAACGACAGT
AAAGGGGAAAACGAGCCGTTTTTCCGTCGTTGGATACTTAGTGTCGTACG
TGGTCGAGCAATGCCTGTCGTTCCTCTGCTTGTGTCTACCTGTTGGGCTG
CTCTAGCAGTAGTGATATCATGGGTCTCCAGAAGGAATTATGAGCCCCAT
GTGAACGGAGATTGCAGATGGTGGTGTACCCCCTTAGCCGTCGATGGCAA
TGCGCTATCGTACGTAGGGTTTGCGCTCTTCTTGTTGACCAGTTTTAGAG
TCTCAGAGTGAGTATTACCCACAACTTTGCCCGTGCTTAGAGAAAGGATG
TCAAAGATGCTAACGAACGAGGTCCATGCTTCCATAAACCCGATATCTAT
AGAGCGTATGGTCGATACATGGAAGCCATTCGAGTCTGGACAGGAATTGG
AGGCACGGTCACAAGCTTCGCAAAGTATGTTGTTCAGGCCTTTCCATCTG
GTACGTTTCATCGTGGAGACCAGGAGCGTATGCTTGGATTCTTGGCAGCC
TTTCCCGTGGCTTTGAAAAGACAACTTCGAGGCGAAAAGGATTTGCGGGA
GCTAAAGAGTGTTTTGTCAACAGAGGACCTCGCTGAGCTCCAGAATGCGC
CGAATATGCCTTCCCATTGCCTTTATGTTCTGTCAGCATATCTTCTTGCA
GCGCAACGACGCGAAAATAGGCTTCCTCAAGCGTTCCTTGTGGTAAGTTT
GAAGGGGTTTCCCTTCTGAAAAGATGATCGCGGTTCAACATCAGAAATCT
TCAAGAAGGCGCCCGTCACTGTTAAGGCTAACTCCATCATTTCCTCGAAT
TGAAGCATTTGATTCGCTGGGTTGCAGATCTCGCCGGTGCCGCGGATACT
TGTATGCAGATTAAGACTATGCCTGCACCATATTCATATATAAGGTATGG
TTCTCCCATCCAAAGGTTCCCGGTCTTACTGGAAACTACCCAGACATTCT
GGTAGCCAAAAGAACGTTAGCAATGATTCCAGAATCTAACCTCTCACCTT
CAAACATCGTGGATTCTAGTCATTTGAACACCTTTCTATCTCTCTGGCTC
TTCTTGTAAGTGTGTCGCATGGAAATCCTTTGTTCTTGCTCTCTGCAAAC
TGTTCTGACAATCCTATGTCTTATGTCCAGTCTACCTTTTGCCCTAGTGG
AAACTTCAGGCTGGTTGACGATTGCCATTGTCGCCTTCATTTCTTATGGA
CTCTTAGGAGTGGTTTCTAACGCGGCTGAACTCGAAGATCCATTTGGAGG
CGGTACGTGTAGCAGAAAAAACCCTCAGCGAAGTCAGAAGAAGGAAAATC
TCCCAGCTTCTGAATCGAAAAGAGATAGGAGGCAGACATGTGTACTAACA
TTGAGCAACAACTTTATTGCGCCTCTAGACTATAATGATTTGCCGTTGGG
CAAACTGTCGCAATCGATTCAAGATGATGTCTCAATGATCTACGACCAAT
CACGAACTGCCCCAAGAAGAACTGTTGTCCGTGAAGTGGACGATGTTGAA
CTGCGCGACCAACACGACTATTGGCTCAAAACAAGCAACACCACATAA
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Coding sequence (CDS) from alignment at tig00000189_pilon:171488..173335-

>Ggra3380.t1 ID=Ggra3380.t1|Name=Ggra3380.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1314bp|location=Sequence derived from alignment at tig00000189_pilon:171488..173335- (Gracilaria gracilis GNS1m male)
ATGGAGCGCGATAACAGTAATCAAAGAACACAAGAGCACCATGTTCGTAT
ACAAGAGCCTACTCTGGATACGTCATCTTCTTCATCCTCCGCCGCAGATG
TGCAGTCTCTGAAGTCCACGGCATCAGTCCATGCTCTGGACAGCCACCTC
GATCATGTATCAGAGGCTAGCAGTCTCGACGCCCCACCTCCGAACAATGC
AGCTGATGAAACTGCCTTTTTAAACATCATAACTGTACATGGTGAAAGGC
TCGAGTATACTGACCATGAAAACGAACAAGCATTCAAGAAGAACGACAGT
AAAGGGGAAAACGAGCCGTTTTTCCGTCGTTGGATACTTAGTGTCGTACG
TGGTCGAGCAATGCCTGTCGTTCCTCTGCTTGTGTCTACCTGTTGGGCTG
CTCTAGCAGTAGTGATATCATGGGTCTCCAGAAGGAATTATGAGCCCCAT
GTGAACGGAGATTGCAGATGGTGGTGTACCCCCTTAGCCGTCGATGGCAA
TGCGCTATCGTACGTAGGGTTTGCGCTCTTCTTGTTGACCAGTTTTAGAG
TCTCAGAAGCGTATGGTCGATACATGGAAGCCATTCGAGTCTGGACAGGA
ATTGGAGGCACGGTCACAAGCTTCGCAAAGTATGTTGTTCAGGCCTTTCC
ATCTGGTACGTTTCATCGTGGAGACCAGGAGCGTATGCTTGGATTCTTGG
CAGCCTTTCCCGTGGCTTTGAAAAGACAACTTCGAGGCGAAAAGGATTTG
CGGGAGCTAAAGAGTGTTTTGTCAACAGAGGACCTCGCTGAGCTCCAGAA
TGCGCCGAATATGCCTTCCCATTGCCTTTATGTTCTGTCAGCATATCTTC
TTGCAGCGCAACGACGCGAAAATAGGCTTCCTCAAGCGTTCCTTGTGCAT
TTGATTCGCTGGGTTGCAGATCTCGCCGGTGCCGCGGATACTTGTATGCA
GATTAAGACTATGCCTGCACCATATTCATATATAAGTCATTTGAACACCT
TTCTATCTCTCTGGCTCTTCTTTCTACCTTTTGCCCTAGTGGAAACTTCA
GGCTGGTTGACGATTGCCATTGTCGCCTTCATTTCTTATGGACTCTTAGG
AGTGGTTTCTAACGCGGCTGAACTCGAAGATCCATTTGGAGGCGACTATA
ATGATTTGCCGTTGGGCAAACTGTCGCAATCGATTCAAGATGATGTCTCA
ATGATCTACGACCAATCACGAACTGCCCCAAGAAGAACTGTTGTCCGTGA
AGTGGACGATGTTGAACTGCGCGACCAACACGACTATTGGCTCAAAACAA
GCAACACCACATAA
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