Ggra3379.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3379.t1
Unique Name	Ggra3379.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	357

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000189_pilon	contig	tig00000189_pilon:169632..170702 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3379	Ggra3379	Gracilaria gracilis GNS1m male	gene	tig00000189_pilon 169632..170702 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3379.t1.start1	Ggra3379.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000189_pilon 169632..169634 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3379.t1.CDS1	Ggra3379.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000189_pilon 169632..170702 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3379.t1.exon1	Ggra3379.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000189_pilon 169632..170702 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3379.t1.stop1	Ggra3379.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000189_pilon 170700..170702 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3379.t1	Ggra3379.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000189_pilon 169632..170702 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000189_pilon:169632..170702+
coding sequence from alignment at tig00000189_pilon:169632..170702+

mRNA sequence

>Ggra3379.t1 ID=Ggra3379.t1|Name=Ggra3379.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp
MVSASPSPRLRRHRTSSREDSCIEPRAYPAALWPFRGPASIASSLSPSNS
SRRLPRPLAAPLMNLRSSAIFALEHSFEFSELNDQPVPLSSGLSPSLRDA
LPHPTPLRAPSPPVPSDLSAASTRAVTEPHTLRDLRRVTAPLSMMDPWQY
DTLAARCQEPDPSSKPSADHNQPHARRARDLSHTSESRRRKFRPKFFERK
LNRRMRHEFYQRSAIPDRLQDAFAASSAENSQSHFQAESHPPTAAPPHPQ
RLVTYTPFQDDSLLTAVTAEVSEQVDQPLSRPRAASEPSVRRRNSSFFAG
REGVLSLWDRLWRRRRSTNHTSSAAAHSTTPSPARRSGKLSRLRKLDFRL
TSRSYL*

spliced messenger RNA

>Ggra3379.t1 ID=Ggra3379.t1|Name=Ggra3379.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000189_pilon:169632..170702+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTCCGCTTCCCCGTCGCCGCGTCTCCGCCGCCATCGCACGTCTTC
GCGCGAGGACTCCTGCATCGAGCCCCGCGCTTACCCCGCCGCGCTGTGGC
CGTTTCGCGGTCCGGCGTCCATTGCTTCGTCGCTGTCGCCGTCCAACTCA
TCGCGAAGGCTTCCCCGCCCGCTCGCCGCCCCCCTCATGAACCTTCGATC
GTCCGCTATCTTCGCACTCGAGCACTCGTTTGAGTTTTCCGAGCTTAATG
ATCAGCCCGTTCCGCTTTCGTCTGGTTTGAGTCCCTCCTTGCGTGATGCA
CTGCCGCATCCCACACCGTTACGTGCACCATCGCCGCCCGTTCCTTCCGA
CCTTTCCGCAGCATCCACTCGCGCTGTCACTGAACCGCATACGCTGCGTG
ACCTTCGTCGTGTTACCGCCCCCTTGTCCATGATGGACCCGTGGCAATAC
GACACACTTGCTGCTCGTTGCCAGGAACCAGATCCGTCTTCGAAGCCCAG
TGCTGACCACAACCAACCCCACGCACGTCGTGCGCGTGATCTTTCGCACA
CGTCTGAATCGCGTCGTCGTAAGTTCCGTCCCAAGTTTTTCGAACGCAAG
TTGAATCGCAGGATGCGTCATGAGTTTTACCAGCGTTCGGCTATCCCAGA
TCGCTTGCAGGATGCATTTGCGGCTTCTTCTGCGGAGAACTCACAGTCGC
ACTTTCAAGCCGAATCTCATCCCCCAACTGCTGCTCCGCCACACCCTCAA
AGGCTGGTTACGTACACACCTTTTCAAGATGATTCGCTTTTGACAGCCGT
CACTGCAGAAGTATCGGAACAGGTTGATCAGCCCTTGTCCCGTCCTCGGG
CAGCTTCCGAACCTTCTGTTCGTCGTCGAAATTCCTCCTTTTTTGCTGGG
AGAGAAGGCGTTCTCTCACTATGGGATCGCCTTTGGAGACGTCGACGCTC
AACCAATCACACTTCTAGCGCTGCAGCACATTCTACCACGCCTTCTCCAG
CCCGAAGAAGTGGCAAACTATCCCGACTTCGAAAGCTCGACTTTCGTCTC
ACGTCTCGATCTTATCTGTAA

protein sequence of Ggra3379.t1

>Ggra3379.t1 ID=Ggra3379.t1|Name=Ggra3379.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=357bp
MVSASPSPRLRRHRTSSREDSCIEPRAYPAALWPFRGPASIASSLSPSNS
SRRLPRPLAAPLMNLRSSAIFALEHSFEFSELNDQPVPLSSGLSPSLRDA
LPHPTPLRAPSPPVPSDLSAASTRAVTEPHTLRDLRRVTAPLSMMDPWQY
DTLAARCQEPDPSSKPSADHNQPHARRARDLSHTSESRRRKFRPKFFERK
LNRRMRHEFYQRSAIPDRLQDAFAASSAENSQSHFQAESHPPTAAPPHPQ
RLVTYTPFQDDSLLTAVTAEVSEQVDQPLSRPRAASEPSVRRRNSSFFAG
REGVLSLWDRLWRRRRSTNHTSSAAAHSTTPSPARRSGKLSRLRKLDFRL
TSRSYL*

mRNA from alignment at tig00000189_pilon:169632..170702+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3379.t1 ID=Ggra3379.t1|Name=Ggra3379.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000189_pilon:169632..170702+ (Gracilaria gracilis GNS1m male)
ATGGTCTCCGCTTCCCCGTCGCCGCGTCTCCGCCGCCATCGCACGTCTTC
GCGCGAGGACTCCTGCATCGAGCCCCGCGCTTACCCCGCCGCGCTGTGGC
CGTTTCGCGGTCCGGCGTCCATTGCTTCGTCGCTGTCGCCGTCCAACTCA
TCGCGAAGGCTTCCCCGCCCGCTCGCCGCCCCCCTCATGAACCTTCGATC
GTCCGCTATCTTCGCACTCGAGCACTCGTTTGAGTTTTCCGAGCTTAATG
ATCAGCCCGTTCCGCTTTCGTCTGGTTTGAGTCCCTCCTTGCGTGATGCA
CTGCCGCATCCCACACCGTTACGTGCACCATCGCCGCCCGTTCCTTCCGA
CCTTTCCGCAGCATCCACTCGCGCTGTCACTGAACCGCATACGCTGCGTG
ACCTTCGTCGTGTTACCGCCCCCTTGTCCATGATGGACCCGTGGCAATAC
GACACACTTGCTGCTCGTTGCCAGGAACCAGATCCGTCTTCGAAGCCCAG
TGCTGACCACAACCAACCCCACGCACGTCGTGCGCGTGATCTTTCGCACA
CGTCTGAATCGCGTCGTCGTAAGTTCCGTCCCAAGTTTTTCGAACGCAAG
TTGAATCGCAGGATGCGTCATGAGTTTTACCAGCGTTCGGCTATCCCAGA
TCGCTTGCAGGATGCATTTGCGGCTTCTTCTGCGGAGAACTCACAGTCGC
ACTTTCAAGCCGAATCTCATCCCCCAACTGCTGCTCCGCCACACCCTCAA
AGGCTGGTTACGTACACACCTTTTCAAGATGATTCGCTTTTGACAGCCGT
CACTGCAGAAGTATCGGAACAGGTTGATCAGCCCTTGTCCCGTCCTCGGG
CAGCTTCCGAACCTTCTGTTCGTCGTCGAAATTCCTCCTTTTTTGCTGGG
AGAGAAGGCGTTCTCTCACTATGGGATCGCCTTTGGAGACGTCGACGCTC
AACCAATCACACTTCTAGCGCTGCAGCACATTCTACCACGCCTTCTCCAG
CCCGAAGAAGTGGCAAACTATCCCGACTTCGAAAGCTCGACTTTCGTCTC
ACGTCTCGATCTTATCTGTAA

Coding sequence (CDS) from alignment at tig00000189_pilon:169632..170702+

>Ggra3379.t1 ID=Ggra3379.t1|Name=Ggra3379.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1071bp|location=Sequence derived from alignment at tig00000189_pilon:169632..170702+ (Gracilaria gracilis GNS1m male)
ATGGTCTCCGCTTCCCCGTCGCCGCGTCTCCGCCGCCATCGCACGTCTTC
GCGCGAGGACTCCTGCATCGAGCCCCGCGCTTACCCCGCCGCGCTGTGGC
CGTTTCGCGGTCCGGCGTCCATTGCTTCGTCGCTGTCGCCGTCCAACTCA
TCGCGAAGGCTTCCCCGCCCGCTCGCCGCCCCCCTCATGAACCTTCGATC
GTCCGCTATCTTCGCACTCGAGCACTCGTTTGAGTTTTCCGAGCTTAATG
ATCAGCCCGTTCCGCTTTCGTCTGGTTTGAGTCCCTCCTTGCGTGATGCA
CTGCCGCATCCCACACCGTTACGTGCACCATCGCCGCCCGTTCCTTCCGA
CCTTTCCGCAGCATCCACTCGCGCTGTCACTGAACCGCATACGCTGCGTG
ACCTTCGTCGTGTTACCGCCCCCTTGTCCATGATGGACCCGTGGCAATAC
GACACACTTGCTGCTCGTTGCCAGGAACCAGATCCGTCTTCGAAGCCCAG
TGCTGACCACAACCAACCCCACGCACGTCGTGCGCGTGATCTTTCGCACA
CGTCTGAATCGCGTCGTCGTAAGTTCCGTCCCAAGTTTTTCGAACGCAAG
TTGAATCGCAGGATGCGTCATGAGTTTTACCAGCGTTCGGCTATCCCAGA
TCGCTTGCAGGATGCATTTGCGGCTTCTTCTGCGGAGAACTCACAGTCGC
ACTTTCAAGCCGAATCTCATCCCCCAACTGCTGCTCCGCCACACCCTCAA
AGGCTGGTTACGTACACACCTTTTCAAGATGATTCGCTTTTGACAGCCGT
CACTGCAGAAGTATCGGAACAGGTTGATCAGCCCTTGTCCCGTCCTCGGG
CAGCTTCCGAACCTTCTGTTCGTCGTCGAAATTCCTCCTTTTTTGCTGGG
AGAGAAGGCGTTCTCTCACTATGGGATCGCCTTTGGAGACGTCGACGCTC
AACCAATCACACTTCTAGCGCTGCAGCACATTCTACCACGCCTTCTCCAG
CCCGAAGAAGTGGCAAACTATCCCGACTTCGAAAGCTCGACTTTCGTCTC
ACGTCTCGATCTTATCTGTAA