Ggra3373.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3373.t1
Unique NameGgra3373.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:157090..158394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707397.1
PFAMsOxysterol_BP,PH
Max annot lvl2759|Eukaryota
KEGG koko:K20456
Evalue8.76e-73
EggNOG OGsKOG1737@1|root,KOG1737@2759|Eukaryota
Descriptionlipid transport
COG categoryO
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3373Ggra3373Gracilaria gracilis GNS1m malegenetig00000189_pilon 157090..158394 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3373.t1.stop1Ggra3373.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 157090..157092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3373.t1.CDS1Ggra3373.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 157090..158394 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3373.t1.exon1Ggra3373.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 157090..158394 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3373.t1.start1Ggra3373.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 158392..158394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3373.t1Ggra3373.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 157090..158394 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3373.t1 ID=Ggra3373.t1|Name=Ggra3373.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=435bp
MRHHLLPPEPDVVGVREAADQRARVRTEVMTAPDFDDGVCPSALSPSPRR
VPAPPPRVVPPPAKPNLFAILKDAVSKDITRMTIPVHFNEPLSFLQRLAE
DIEYHHLLDVAALPQYAHTSRRAALVAAFVVSQFSSTAQRTSKPFNPLLG
ETFELLLPERGVAFVAEQVSHHPPMSAVFVKGNGWTYHTAHRVKNKFLVN
AMEAWPEGTVHILFDDGDHFMYEKPHTFVNNLFFGSMWIDIAGSVTIRNN
HFVTSLLMKRACTMPFREGKGLGNTVGSVFAANDRSKKPLHKIVANWTSD
ALIDGHEVWKVSPKPPSSHTASSSFTSWAWSLNAPLESDSAVSVPKTDSR
RRPDQRALETGDHKLASSEKERLELAQRERKQASEQEKNPFQPLWFELGL
HPSTGRKEWRYNGQYFRRKRDATAVWPEHGPDIF*
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spliced messenger RNA

>Ggra3373.t1 ID=Ggra3373.t1|Name=Ggra3373.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000189_pilon:157090..158394- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCATCATTTGTTGCCGCCGGAGCCGGACGTCGTTGGCGTGCGCGA
AGCGGCCGACCAACGCGCGCGCGTCCGCACCGAAGTGATGACCGCGCCCG
ACTTCGACGACGGCGTGTGCCCGAGCGCACTGTCGCCGTCGCCGCGCCGC
GTGCCCGCGCCGCCGCCGCGCGTCGTGCCGCCGCCCGCGAAGCCCAACCT
GTTCGCCATCCTCAAGGATGCCGTGTCCAAAGACATCACACGCATGACCA
TCCCCGTCCACTTCAATGAGCCGCTCTCCTTCCTGCAGCGCCTGGCGGAG
GATATCGAGTACCATCACCTGCTGGACGTCGCCGCTCTTCCGCAGTATGC
GCACACTTCGCGCCGCGCCGCGCTCGTGGCTGCCTTTGTCGTCAGTCAGT
TTTCGTCCACGGCGCAGCGTACTTCCAAGCCGTTCAACCCGTTACTTGGC
GAGACGTTTGAGCTCTTGTTGCCTGAGCGCGGCGTTGCATTTGTTGCGGA
GCAGGTTTCGCACCATCCGCCCATGTCCGCCGTGTTCGTCAAGGGCAACG
GCTGGACCTATCACACCGCCCATCGTGTCAAGAACAAGTTCTTGGTCAAC
GCCATGGAAGCCTGGCCGGAGGGCACCGTGCACATCCTCTTTGATGATGG
TGACCACTTCATGTACGAAAAGCCGCACACCTTTGTCAACAACCTGTTTT
TCGGCAGTATGTGGATTGATATTGCGGGCAGTGTCACCATTAGAAACAAC
CACTTCGTCACTTCCCTCCTCATGAAACGTGCGTGCACCATGCCCTTCCG
CGAGGGCAAAGGCCTTGGGAACACTGTGGGCTCCGTGTTTGCCGCCAACG
ACAGAAGCAAGAAGCCGTTGCACAAGATCGTGGCAAACTGGACCTCCGAC
GCCCTCATCGATGGTCACGAGGTGTGGAAAGTCTCCCCAAAGCCCCCCTC
ATCTCATACCGCTTCGAGCAGCTTCACGTCCTGGGCATGGTCCCTCAATG
CGCCTTTGGAGTCGGATTCCGCTGTGTCCGTTCCGAAGACTGATTCTCGA
CGCCGTCCGGACCAAAGGGCACTTGAAACGGGCGATCATAAGTTGGCCAG
CTCGGAGAAGGAGCGATTGGAACTGGCGCAGAGGGAAAGAAAACAGGCGA
GTGAGCAAGAGAAGAATCCCTTCCAGCCCCTGTGGTTTGAACTGGGTCTT
CACCCTTCCACGGGTCGCAAAGAGTGGAGGTATAATGGACAGTATTTTCG
TCGGAAGAGAGACGCAACTGCTGTATGGCCTGAACACGGTCCTGATATCT
TTTAG
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protein sequence of Ggra3373.t1

>Ggra3373.t1 ID=Ggra3373.t1|Name=Ggra3373.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=435bp
MRHHLLPPEPDVVGVREAADQRARVRTEVMTAPDFDDGVCPSALSPSPRR
VPAPPPRVVPPPAKPNLFAILKDAVSKDITRMTIPVHFNEPLSFLQRLAE
DIEYHHLLDVAALPQYAHTSRRAALVAAFVVSQFSSTAQRTSKPFNPLLG
ETFELLLPERGVAFVAEQVSHHPPMSAVFVKGNGWTYHTAHRVKNKFLVN
AMEAWPEGTVHILFDDGDHFMYEKPHTFVNNLFFGSMWIDIAGSVTIRNN
HFVTSLLMKRACTMPFREGKGLGNTVGSVFAANDRSKKPLHKIVANWTSD
ALIDGHEVWKVSPKPPSSHTASSSFTSWAWSLNAPLESDSAVSVPKTDSR
RRPDQRALETGDHKLASSEKERLELAQRERKQASEQEKNPFQPLWFELGL
HPSTGRKEWRYNGQYFRRKRDATAVWPEHGPDIF*
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mRNA from alignment at tig00000189_pilon:157090..158394-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3373.t1 ID=Ggra3373.t1|Name=Ggra3373.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000189_pilon:157090..158394- (Gracilaria gracilis GNS1m male)
ATGCGCCATCATTTGTTGCCGCCGGAGCCGGACGTCGTTGGCGTGCGCGA
AGCGGCCGACCAACGCGCGCGCGTCCGCACCGAAGTGATGACCGCGCCCG
ACTTCGACGACGGCGTGTGCCCGAGCGCACTGTCGCCGTCGCCGCGCCGC
GTGCCCGCGCCGCCGCCGCGCGTCGTGCCGCCGCCCGCGAAGCCCAACCT
GTTCGCCATCCTCAAGGATGCCGTGTCCAAAGACATCACACGCATGACCA
TCCCCGTCCACTTCAATGAGCCGCTCTCCTTCCTGCAGCGCCTGGCGGAG
GATATCGAGTACCATCACCTGCTGGACGTCGCCGCTCTTCCGCAGTATGC
GCACACTTCGCGCCGCGCCGCGCTCGTGGCTGCCTTTGTCGTCAGTCAGT
TTTCGTCCACGGCGCAGCGTACTTCCAAGCCGTTCAACCCGTTACTTGGC
GAGACGTTTGAGCTCTTGTTGCCTGAGCGCGGCGTTGCATTTGTTGCGGA
GCAGGTTTCGCACCATCCGCCCATGTCCGCCGTGTTCGTCAAGGGCAACG
GCTGGACCTATCACACCGCCCATCGTGTCAAGAACAAGTTCTTGGTCAAC
GCCATGGAAGCCTGGCCGGAGGGCACCGTGCACATCCTCTTTGATGATGG
TGACCACTTCATGTACGAAAAGCCGCACACCTTTGTCAACAACCTGTTTT
TCGGCAGTATGTGGATTGATATTGCGGGCAGTGTCACCATTAGAAACAAC
CACTTCGTCACTTCCCTCCTCATGAAACGTGCGTGCACCATGCCCTTCCG
CGAGGGCAAAGGCCTTGGGAACACTGTGGGCTCCGTGTTTGCCGCCAACG
ACAGAAGCAAGAAGCCGTTGCACAAGATCGTGGCAAACTGGACCTCCGAC
GCCCTCATCGATGGTCACGAGGTGTGGAAAGTCTCCCCAAAGCCCCCCTC
ATCTCATACCGCTTCGAGCAGCTTCACGTCCTGGGCATGGTCCCTCAATG
CGCCTTTGGAGTCGGATTCCGCTGTGTCCGTTCCGAAGACTGATTCTCGA
CGCCGTCCGGACCAAAGGGCACTTGAAACGGGCGATCATAAGTTGGCCAG
CTCGGAGAAGGAGCGATTGGAACTGGCGCAGAGGGAAAGAAAACAGGCGA
GTGAGCAAGAGAAGAATCCCTTCCAGCCCCTGTGGTTTGAACTGGGTCTT
CACCCTTCCACGGGTCGCAAAGAGTGGAGGTATAATGGACAGTATTTTCG
TCGGAAGAGAGACGCAACTGCTGTATGGCCTGAACACGGTCCTGATATCT
TTTAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:157090..158394-

>Ggra3373.t1 ID=Ggra3373.t1|Name=Ggra3373.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00000189_pilon:157090..158394- (Gracilaria gracilis GNS1m male)
ATGCGCCATCATTTGTTGCCGCCGGAGCCGGACGTCGTTGGCGTGCGCGA
AGCGGCCGACCAACGCGCGCGCGTCCGCACCGAAGTGATGACCGCGCCCG
ACTTCGACGACGGCGTGTGCCCGAGCGCACTGTCGCCGTCGCCGCGCCGC
GTGCCCGCGCCGCCGCCGCGCGTCGTGCCGCCGCCCGCGAAGCCCAACCT
GTTCGCCATCCTCAAGGATGCCGTGTCCAAAGACATCACACGCATGACCA
TCCCCGTCCACTTCAATGAGCCGCTCTCCTTCCTGCAGCGCCTGGCGGAG
GATATCGAGTACCATCACCTGCTGGACGTCGCCGCTCTTCCGCAGTATGC
GCACACTTCGCGCCGCGCCGCGCTCGTGGCTGCCTTTGTCGTCAGTCAGT
TTTCGTCCACGGCGCAGCGTACTTCCAAGCCGTTCAACCCGTTACTTGGC
GAGACGTTTGAGCTCTTGTTGCCTGAGCGCGGCGTTGCATTTGTTGCGGA
GCAGGTTTCGCACCATCCGCCCATGTCCGCCGTGTTCGTCAAGGGCAACG
GCTGGACCTATCACACCGCCCATCGTGTCAAGAACAAGTTCTTGGTCAAC
GCCATGGAAGCCTGGCCGGAGGGCACCGTGCACATCCTCTTTGATGATGG
TGACCACTTCATGTACGAAAAGCCGCACACCTTTGTCAACAACCTGTTTT
TCGGCAGTATGTGGATTGATATTGCGGGCAGTGTCACCATTAGAAACAAC
CACTTCGTCACTTCCCTCCTCATGAAACGTGCGTGCACCATGCCCTTCCG
CGAGGGCAAAGGCCTTGGGAACACTGTGGGCTCCGTGTTTGCCGCCAACG
ACAGAAGCAAGAAGCCGTTGCACAAGATCGTGGCAAACTGGACCTCCGAC
GCCCTCATCGATGGTCACGAGGTGTGGAAAGTCTCCCCAAAGCCCCCCTC
ATCTCATACCGCTTCGAGCAGCTTCACGTCCTGGGCATGGTCCCTCAATG
CGCCTTTGGAGTCGGATTCCGCTGTGTCCGTTCCGAAGACTGATTCTCGA
CGCCGTCCGGACCAAAGGGCACTTGAAACGGGCGATCATAAGTTGGCCAG
CTCGGAGAAGGAGCGATTGGAACTGGCGCAGAGGGAAAGAAAACAGGCGA
GTGAGCAAGAGAAGAATCCCTTCCAGCCCCTGTGGTTTGAACTGGGTCTT
CACCCTTCCACGGGTCGCAAAGAGTGGAGGTATAATGGACAGTATTTTCG
TCGGAAGAGAGACGCAACTGCTGTATGGCCTGAACACGGTCCTGATATCT
TTTAG
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