Ggra3372.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3372.t1
Unique Name	Ggra3372.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	592

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000189_pilon	contig	tig00000189_pilon:151250..153025 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3372	Ggra3372	Gracilaria gracilis GNS1m male	gene	tig00000189_pilon 151250..153025 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3372.t1.stop1	Ggra3372.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000189_pilon 151250..151252 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3372.t1.CDS1	Ggra3372.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000189_pilon 151250..153025 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3372.t1.exon1	Ggra3372.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000189_pilon 151250..153025 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3372.t1.start1	Ggra3372.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000189_pilon 153023..153025 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3372.t1	Ggra3372.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000189_pilon 151250..153025 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000189_pilon:151250..153025-
coding sequence from alignment at tig00000189_pilon:151250..153025-

mRNA sequence

>Ggra3372.t1 ID=Ggra3372.t1|Name=Ggra3372.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=592bp
MASSSQAGRAQSFQDFAQERQRFLQCIVTELSTRFGKTKYAQLAALLAHQ
SQTEQRRLQVEQQINALKTFESAAGELILLDQLREELLNSENYAIGPESR
DAVLYQGMRLGGQGTWNWIEATRKHLSRLCIDDRVNGVAVIFNPRDILDG
SLDVTPIYESIFVHRNATNITIDEMRSRNPIVYALSYRHMGKEVSLDLQT
FQSTLRTVARRWEPLSFPAEVALWIDRCMEYVPGVPWVDIGLAPYAEYGI
VAIFKNVLEEKSRVWLWLERQYVAVKTSTSVCDAYLYKESSGKGYFIING
NPGGVQGGPRDQFQVEDNNIVVVNNLGDTSVRMRTSWLYRIAWKFLKRVN
GLVATYPEDIDMIERWFTNAVYKGCDIMRGVMQHIEMERSQEAAWNTMIE
HNRPDKDELVDHGETSTGLGFQCWSGPGEFDSEFSDPGLSKYITAIQGCY
RNEAGAFVKFSNQRGDFVLHFVKTDNKGFRGHAFTTQRLDDDFEKVIGDL
MTMQNRQIPKIWLFLEKSWAPRHFRMTYVPDEVKQVLHKDVPTHMAYGEV
EELQRERYLASGGTLKSERDRDLRVSAVWGRVASAEEIAWK*

spliced messenger RNA

>Ggra3372.t1 ID=Ggra3372.t1|Name=Ggra3372.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1776bp|location=Sequence derived from alignment at tig00000189_pilon:151250..153025- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGCTCCTCGCAAGCAGGACGGGCTCAGTCGTTCCAGGACTTTGC
TCAAGAACGACAACGCTTTCTCCAGTGCATCGTAACCGAGTTGAGCACCC
GGTTTGGCAAGACCAAGTATGCACAGCTAGCTGCGCTATTAGCGCACCAG
TCACAGACGGAGCAACGGCGCTTGCAAGTGGAGCAGCAAATCAATGCCTT
GAAGACGTTTGAATCCGCCGCAGGAGAGCTTATCTTACTCGACCAACTAC
GTGAGGAGTTGCTCAATTCTGAAAACTATGCTATAGGTCCCGAAAGTCGT
GACGCCGTCTTGTACCAAGGGATGAGGTTAGGAGGGCAGGGAACGTGGAA
CTGGATTGAAGCAACCCGTAAGCATCTTTCGCGTTTGTGCATTGACGATA
GAGTCAACGGTGTGGCCGTCATTTTCAACCCGCGCGACATTCTTGATGGC
TCTTTGGATGTCACTCCTATATACGAGTCCATCTTTGTGCATCGCAATGC
GACCAATATTACTATCGATGAGATGAGATCGCGAAATCCTATTGTCTATG
CCCTGTCCTATCGACATATGGGGAAGGAAGTTTCCCTTGATCTGCAAACT
TTTCAGTCCACACTCCGCACCGTAGCCAGACGCTGGGAACCATTGTCGTT
TCCGGCAGAAGTTGCGCTTTGGATCGATAGATGTATGGAATACGTCCCTG
GTGTGCCCTGGGTTGATATTGGCCTTGCTCCGTATGCCGAATATGGCATT
GTGGCTATATTCAAGAACGTCCTTGAAGAAAAGTCGAGGGTATGGCTTTG
GTTGGAGAGGCAGTATGTTGCGGTCAAGACAAGTACGTCTGTGTGCGACG
CCTATTTGTACAAAGAGTCTTCCGGTAAGGGATACTTTATTATCAATGGT
AATCCCGGTGGCGTGCAGGGCGGCCCTAGGGATCAGTTCCAGGTGGAGGA
TAATAACATTGTTGTCGTGAACAATCTTGGGGATACATCTGTGAGGATGC
GAACGAGTTGGCTGTATCGCATTGCGTGGAAGTTTCTCAAGCGTGTCAAC
GGGCTTGTGGCCACATACCCGGAGGATATAGACATGATCGAGCGATGGTT
TACGAATGCTGTCTACAAGGGTTGCGATATTATGCGTGGCGTTATGCAGC
ACATTGAAATGGAGCGGTCGCAGGAAGCGGCTTGGAACACGATGATTGAA
CACAACCGGCCTGATAAGGATGAACTGGTAGATCATGGCGAAACGAGCAC
GGGTCTTGGCTTCCAGTGCTGGTCTGGGCCGGGCGAATTTGACAGCGAGT
TCTCGGACCCGGGGTTGAGCAAGTACATCACTGCAATTCAAGGATGTTAC
CGAAATGAGGCTGGAGCTTTTGTGAAGTTTTCCAATCAACGTGGAGACTT
TGTACTTCATTTTGTCAAGACGGACAACAAGGGATTTCGCGGACACGCCT
TTACAACGCAACGGCTTGATGATGACTTTGAAAAAGTGATTGGTGATCTC
ATGACCATGCAGAATCGTCAGATTCCCAAGATTTGGCTCTTTCTGGAAAA
ATCTTGGGCGCCGAGGCACTTTCGGATGACGTATGTTCCGGACGAAGTAA
AGCAAGTTCTCCACAAAGATGTGCCGACCCACATGGCATATGGCGAGGTG
GAAGAGTTGCAGCGTGAGAGGTATCTGGCTAGTGGCGGAACACTTAAGTC
CGAGAGAGATAGGGACCTTAGAGTCTCCGCAGTATGGGGCCGAGTGGCCT
CAGCGGAGGAGATTGCATGGAAATGA

protein sequence of Ggra3372.t1

>Ggra3372.t1 ID=Ggra3372.t1|Name=Ggra3372.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=592bp
MASSSQAGRAQSFQDFAQERQRFLQCIVTELSTRFGKTKYAQLAALLAHQ
SQTEQRRLQVEQQINALKTFESAAGELILLDQLREELLNSENYAIGPESR
DAVLYQGMRLGGQGTWNWIEATRKHLSRLCIDDRVNGVAVIFNPRDILDG
SLDVTPIYESIFVHRNATNITIDEMRSRNPIVYALSYRHMGKEVSLDLQT
FQSTLRTVARRWEPLSFPAEVALWIDRCMEYVPGVPWVDIGLAPYAEYGI
VAIFKNVLEEKSRVWLWLERQYVAVKTSTSVCDAYLYKESSGKGYFIING
NPGGVQGGPRDQFQVEDNNIVVVNNLGDTSVRMRTSWLYRIAWKFLKRVN
GLVATYPEDIDMIERWFTNAVYKGCDIMRGVMQHIEMERSQEAAWNTMIE
HNRPDKDELVDHGETSTGLGFQCWSGPGEFDSEFSDPGLSKYITAIQGCY
RNEAGAFVKFSNQRGDFVLHFVKTDNKGFRGHAFTTQRLDDDFEKVIGDL
MTMQNRQIPKIWLFLEKSWAPRHFRMTYVPDEVKQVLHKDVPTHMAYGEV
EELQRERYLASGGTLKSERDRDLRVSAVWGRVASAEEIAWK*

mRNA from alignment at tig00000189_pilon:151250..153025-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3372.t1 ID=Ggra3372.t1|Name=Ggra3372.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1776bp|location=Sequence derived from alignment at tig00000189_pilon:151250..153025- (Gracilaria gracilis GNS1m male)
ATGGCCAGCTCCTCGCAAGCAGGACGGGCTCAGTCGTTCCAGGACTTTGC
TCAAGAACGACAACGCTTTCTCCAGTGCATCGTAACCGAGTTGAGCACCC
GGTTTGGCAAGACCAAGTATGCACAGCTAGCTGCGCTATTAGCGCACCAG
TCACAGACGGAGCAACGGCGCTTGCAAGTGGAGCAGCAAATCAATGCCTT
GAAGACGTTTGAATCCGCCGCAGGAGAGCTTATCTTACTCGACCAACTAC
GTGAGGAGTTGCTCAATTCTGAAAACTATGCTATAGGTCCCGAAAGTCGT
GACGCCGTCTTGTACCAAGGGATGAGGTTAGGAGGGCAGGGAACGTGGAA
CTGGATTGAAGCAACCCGTAAGCATCTTTCGCGTTTGTGCATTGACGATA
GAGTCAACGGTGTGGCCGTCATTTTCAACCCGCGCGACATTCTTGATGGC
TCTTTGGATGTCACTCCTATATACGAGTCCATCTTTGTGCATCGCAATGC
GACCAATATTACTATCGATGAGATGAGATCGCGAAATCCTATTGTCTATG
CCCTGTCCTATCGACATATGGGGAAGGAAGTTTCCCTTGATCTGCAAACT
TTTCAGTCCACACTCCGCACCGTAGCCAGACGCTGGGAACCATTGTCGTT
TCCGGCAGAAGTTGCGCTTTGGATCGATAGATGTATGGAATACGTCCCTG
GTGTGCCCTGGGTTGATATTGGCCTTGCTCCGTATGCCGAATATGGCATT
GTGGCTATATTCAAGAACGTCCTTGAAGAAAAGTCGAGGGTATGGCTTTG
GTTGGAGAGGCAGTATGTTGCGGTCAAGACAAGTACGTCTGTGTGCGACG
CCTATTTGTACAAAGAGTCTTCCGGTAAGGGATACTTTATTATCAATGGT
AATCCCGGTGGCGTGCAGGGCGGCCCTAGGGATCAGTTCCAGGTGGAGGA
TAATAACATTGTTGTCGTGAACAATCTTGGGGATACATCTGTGAGGATGC
GAACGAGTTGGCTGTATCGCATTGCGTGGAAGTTTCTCAAGCGTGTCAAC
GGGCTTGTGGCCACATACCCGGAGGATATAGACATGATCGAGCGATGGTT
TACGAATGCTGTCTACAAGGGTTGCGATATTATGCGTGGCGTTATGCAGC
ACATTGAAATGGAGCGGTCGCAGGAAGCGGCTTGGAACACGATGATTGAA
CACAACCGGCCTGATAAGGATGAACTGGTAGATCATGGCGAAACGAGCAC
GGGTCTTGGCTTCCAGTGCTGGTCTGGGCCGGGCGAATTTGACAGCGAGT
TCTCGGACCCGGGGTTGAGCAAGTACATCACTGCAATTCAAGGATGTTAC
CGAAATGAGGCTGGAGCTTTTGTGAAGTTTTCCAATCAACGTGGAGACTT
TGTACTTCATTTTGTCAAGACGGACAACAAGGGATTTCGCGGACACGCCT
TTACAACGCAACGGCTTGATGATGACTTTGAAAAAGTGATTGGTGATCTC
ATGACCATGCAGAATCGTCAGATTCCCAAGATTTGGCTCTTTCTGGAAAA
ATCTTGGGCGCCGAGGCACTTTCGGATGACGTATGTTCCGGACGAAGTAA
AGCAAGTTCTCCACAAAGATGTGCCGACCCACATGGCATATGGCGAGGTG
GAAGAGTTGCAGCGTGAGAGGTATCTGGCTAGTGGCGGAACACTTAAGTC
CGAGAGAGATAGGGACCTTAGAGTCTCCGCAGTATGGGGCCGAGTGGCCT
CAGCGGAGGAGATTGCATGGAAATGA

Coding sequence (CDS) from alignment at tig00000189_pilon:151250..153025-

>Ggra3372.t1 ID=Ggra3372.t1|Name=Ggra3372.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1776bp|location=Sequence derived from alignment at tig00000189_pilon:151250..153025- (Gracilaria gracilis GNS1m male)
ATGGCCAGCTCCTCGCAAGCAGGACGGGCTCAGTCGTTCCAGGACTTTGC
TCAAGAACGACAACGCTTTCTCCAGTGCATCGTAACCGAGTTGAGCACCC
GGTTTGGCAAGACCAAGTATGCACAGCTAGCTGCGCTATTAGCGCACCAG
TCACAGACGGAGCAACGGCGCTTGCAAGTGGAGCAGCAAATCAATGCCTT
GAAGACGTTTGAATCCGCCGCAGGAGAGCTTATCTTACTCGACCAACTAC
GTGAGGAGTTGCTCAATTCTGAAAACTATGCTATAGGTCCCGAAAGTCGT
GACGCCGTCTTGTACCAAGGGATGAGGTTAGGAGGGCAGGGAACGTGGAA
CTGGATTGAAGCAACCCGTAAGCATCTTTCGCGTTTGTGCATTGACGATA
GAGTCAACGGTGTGGCCGTCATTTTCAACCCGCGCGACATTCTTGATGGC
TCTTTGGATGTCACTCCTATATACGAGTCCATCTTTGTGCATCGCAATGC
GACCAATATTACTATCGATGAGATGAGATCGCGAAATCCTATTGTCTATG
CCCTGTCCTATCGACATATGGGGAAGGAAGTTTCCCTTGATCTGCAAACT
TTTCAGTCCACACTCCGCACCGTAGCCAGACGCTGGGAACCATTGTCGTT
TCCGGCAGAAGTTGCGCTTTGGATCGATAGATGTATGGAATACGTCCCTG
GTGTGCCCTGGGTTGATATTGGCCTTGCTCCGTATGCCGAATATGGCATT
GTGGCTATATTCAAGAACGTCCTTGAAGAAAAGTCGAGGGTATGGCTTTG
GTTGGAGAGGCAGTATGTTGCGGTCAAGACAAGTACGTCTGTGTGCGACG
CCTATTTGTACAAAGAGTCTTCCGGTAAGGGATACTTTATTATCAATGGT
AATCCCGGTGGCGTGCAGGGCGGCCCTAGGGATCAGTTCCAGGTGGAGGA
TAATAACATTGTTGTCGTGAACAATCTTGGGGATACATCTGTGAGGATGC
GAACGAGTTGGCTGTATCGCATTGCGTGGAAGTTTCTCAAGCGTGTCAAC
GGGCTTGTGGCCACATACCCGGAGGATATAGACATGATCGAGCGATGGTT
TACGAATGCTGTCTACAAGGGTTGCGATATTATGCGTGGCGTTATGCAGC
ACATTGAAATGGAGCGGTCGCAGGAAGCGGCTTGGAACACGATGATTGAA
CACAACCGGCCTGATAAGGATGAACTGGTAGATCATGGCGAAACGAGCAC
GGGTCTTGGCTTCCAGTGCTGGTCTGGGCCGGGCGAATTTGACAGCGAGT
TCTCGGACCCGGGGTTGAGCAAGTACATCACTGCAATTCAAGGATGTTAC
CGAAATGAGGCTGGAGCTTTTGTGAAGTTTTCCAATCAACGTGGAGACTT
TGTACTTCATTTTGTCAAGACGGACAACAAGGGATTTCGCGGACACGCCT
TTACAACGCAACGGCTTGATGATGACTTTGAAAAAGTGATTGGTGATCTC
ATGACCATGCAGAATCGTCAGATTCCCAAGATTTGGCTCTTTCTGGAAAA
ATCTTGGGCGCCGAGGCACTTTCGGATGACGTATGTTCCGGACGAAGTAA
AGCAAGTTCTCCACAAAGATGTGCCGACCCACATGGCATATGGCGAGGTG
GAAGAGTTGCAGCGTGAGAGGTATCTGGCTAGTGGCGGAACACTTAAGTC
CGAGAGAGATAGGGACCTTAGAGTCTCCGCAGTATGGGGCCGAGTGGCCT
CAGCGGAGGAGATTGCATGGAAATGA