Ggra3363.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3363.t1
Unique NameGgra3363.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length284
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:111685..112536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog929558.SMGD1_2470
Preferred namecah
PFAMsCarb_anhydrase
Max annot lvl29547|Epsilonproteobacteria
KEGG rclassRC02807
KEGG koko:K01674
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Evalue7.04e-39
EggNOG OGsCOG3338@1|root,COG3338@2|Bacteria,1PEA6@1224|Proteobacteria,42RBG@68525|delta/epsilon subdivisions,2YP5T@29547|Epsilonproteobacteria
EC4.2.1.1
Descriptioncarbonic anhydrase
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3363Ggra3363Gracilaria gracilis GNS1m malegenetig00000189_pilon 111685..112536 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3363.t1.start1Ggra3363.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 111685..111687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3363.t1.CDS1Ggra3363.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 111685..112536 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3363.t1.exon1Ggra3363.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 111685..112536 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3363.t1.stop1Ggra3363.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 112534..112536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3363.t1Ggra3363.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 111685..112536 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3363.t1 ID=Ggra3363.t1|Name=Ggra3363.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=284bp
MKCFIACVLSVLVASAFANEELEVDASGCAVKSAVGDFAYDITLPNNPSN
WGNIKEDFAACKDGDSQSPINFPANVQYAPKGAGPRPKMGLANMTFGASS
YNWAMSCSDESGSCGTTTYGGKTFELINVHFHSPSEHKLFGKQYPLECHM
VHAAEDGSLAVIGTMFDYADQTSYPARIYQNVVPEYGDNNVLGTVLDGVT
KDREEWAIPVGRIVDHSKGYCSYSGSLTTPPCTEGVTWFMSMQVWTVSER
QVHEYSRSAGTSIDGNNRPVQALNERPVTCYVA*
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spliced messenger RNA

>Ggra3363.t1 ID=Ggra3363.t1|Name=Ggra3363.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000189_pilon:111685..112536+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTGCTTCATCGCTTGCGTACTTTCCGTGCTCGTCGCGTCCGCGTT
CGCCAACGAAGAGCTCGAGGTTGACGCTTCGGGATGCGCGGTCAAGTCAG
CCGTGGGTGACTTTGCGTACGACATCACGCTGCCGAACAACCCGTCCAAC
TGGGGTAACATCAAGGAAGACTTCGCCGCGTGCAAGGACGGAGACAGTCA
ATCACCGATCAACTTCCCGGCCAACGTGCAGTACGCGCCCAAGGGCGCCG
GCCCGCGACCGAAAATGGGCTTGGCCAACATGACTTTTGGCGCCAGTTCG
TACAATTGGGCCATGTCGTGCAGCGATGAATCGGGATCGTGCGGTACCAC
CACGTATGGCGGCAAGACGTTCGAGCTCATCAACGTGCACTTCCACTCGC
CGAGTGAGCACAAGCTGTTTGGCAAGCAGTACCCGTTGGAATGCCACATG
GTGCACGCGGCTGAGGACGGCTCACTGGCTGTGATCGGCACCATGTTCGA
CTACGCCGATCAGACTTCGTACCCCGCGCGCATCTACCAGAACGTTGTGC
CGGAGTACGGCGACAACAACGTGCTCGGCACCGTGTTGGACGGCGTGACC
AAGGACCGCGAGGAGTGGGCCATCCCGGTGGGTCGCATCGTGGATCACAG
CAAGGGATACTGCTCGTACTCCGGATCGCTCACCACGCCTCCGTGTACCG
AGGGCGTCACGTGGTTCATGTCCATGCAGGTGTGGACCGTGTCCGAGCGA
CAGGTGCACGAATACTCGCGGAGCGCTGGAACGAGCATCGACGGAAACAA
CCGACCGGTGCAAGCGCTCAACGAGCGCCCGGTCACATGTTACGTGGCGT
AG
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protein sequence of Ggra3363.t1

>Ggra3363.t1 ID=Ggra3363.t1|Name=Ggra3363.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=284bp
MKCFIACVLSVLVASAFANEELEVDASGCAVKSAVGDFAYDITLPNNPSN
WGNIKEDFAACKDGDSQSPINFPANVQYAPKGAGPRPKMGLANMTFGASS
YNWAMSCSDESGSCGTTTYGGKTFELINVHFHSPSEHKLFGKQYPLECHM
VHAAEDGSLAVIGTMFDYADQTSYPARIYQNVVPEYGDNNVLGTVLDGVT
KDREEWAIPVGRIVDHSKGYCSYSGSLTTPPCTEGVTWFMSMQVWTVSER
QVHEYSRSAGTSIDGNNRPVQALNERPVTCYVA*
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mRNA from alignment at tig00000189_pilon:111685..112536+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3363.t1 ID=Ggra3363.t1|Name=Ggra3363.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000189_pilon:111685..112536+ (Gracilaria gracilis GNS1m male)
ATGAAGTGCTTCATCGCTTGCGTACTTTCCGTGCTCGTCGCGTCCGCGTT
CGCCAACGAAGAGCTCGAGGTTGACGCTTCGGGATGCGCGGTCAAGTCAG
CCGTGGGTGACTTTGCGTACGACATCACGCTGCCGAACAACCCGTCCAAC
TGGGGTAACATCAAGGAAGACTTCGCCGCGTGCAAGGACGGAGACAGTCA
ATCACCGATCAACTTCCCGGCCAACGTGCAGTACGCGCCCAAGGGCGCCG
GCCCGCGACCGAAAATGGGCTTGGCCAACATGACTTTTGGCGCCAGTTCG
TACAATTGGGCCATGTCGTGCAGCGATGAATCGGGATCGTGCGGTACCAC
CACGTATGGCGGCAAGACGTTCGAGCTCATCAACGTGCACTTCCACTCGC
CGAGTGAGCACAAGCTGTTTGGCAAGCAGTACCCGTTGGAATGCCACATG
GTGCACGCGGCTGAGGACGGCTCACTGGCTGTGATCGGCACCATGTTCGA
CTACGCCGATCAGACTTCGTACCCCGCGCGCATCTACCAGAACGTTGTGC
CGGAGTACGGCGACAACAACGTGCTCGGCACCGTGTTGGACGGCGTGACC
AAGGACCGCGAGGAGTGGGCCATCCCGGTGGGTCGCATCGTGGATCACAG
CAAGGGATACTGCTCGTACTCCGGATCGCTCACCACGCCTCCGTGTACCG
AGGGCGTCACGTGGTTCATGTCCATGCAGGTGTGGACCGTGTCCGAGCGA
CAGGTGCACGAATACTCGCGGAGCGCTGGAACGAGCATCGACGGAAACAA
CCGACCGGTGCAAGCGCTCAACGAGCGCCCGGTCACATGTTACGTGGCGT
AG
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Coding sequence (CDS) from alignment at tig00000189_pilon:111685..112536+

>Ggra3363.t1 ID=Ggra3363.t1|Name=Ggra3363.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00000189_pilon:111685..112536+ (Gracilaria gracilis GNS1m male)
ATGAAGTGCTTCATCGCTTGCGTACTTTCCGTGCTCGTCGCGTCCGCGTT
CGCCAACGAAGAGCTCGAGGTTGACGCTTCGGGATGCGCGGTCAAGTCAG
CCGTGGGTGACTTTGCGTACGACATCACGCTGCCGAACAACCCGTCCAAC
TGGGGTAACATCAAGGAAGACTTCGCCGCGTGCAAGGACGGAGACAGTCA
ATCACCGATCAACTTCCCGGCCAACGTGCAGTACGCGCCCAAGGGCGCCG
GCCCGCGACCGAAAATGGGCTTGGCCAACATGACTTTTGGCGCCAGTTCG
TACAATTGGGCCATGTCGTGCAGCGATGAATCGGGATCGTGCGGTACCAC
CACGTATGGCGGCAAGACGTTCGAGCTCATCAACGTGCACTTCCACTCGC
CGAGTGAGCACAAGCTGTTTGGCAAGCAGTACCCGTTGGAATGCCACATG
GTGCACGCGGCTGAGGACGGCTCACTGGCTGTGATCGGCACCATGTTCGA
CTACGCCGATCAGACTTCGTACCCCGCGCGCATCTACCAGAACGTTGTGC
CGGAGTACGGCGACAACAACGTGCTCGGCACCGTGTTGGACGGCGTGACC
AAGGACCGCGAGGAGTGGGCCATCCCGGTGGGTCGCATCGTGGATCACAG
CAAGGGATACTGCTCGTACTCCGGATCGCTCACCACGCCTCCGTGTACCG
AGGGCGTCACGTGGTTCATGTCCATGCAGGTGTGGACCGTGTCCGAGCGA
CAGGTGCACGAATACTCGCGGAGCGCTGGAACGAGCATCGACGGAAACAA
CCGACCGGTGCAAGCGCTCAACGAGCGCCCGGTCACATGTTACGTGGCGT
AG
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