Ggra3358.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3358.t1
Unique NameGgra3358.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:98894..100405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_002733203.1
Preferred nameCDC6
PFAMsAAA,AAA_16,AAA_22,Cdc6_C
Max annot lvl33208|Metazoa
KEGG koko:K02213
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
GOsGO:0000075,GO:0000076,GO:0000079,GO:0000082,GO:0000083,GO:0000166,GO:0000228,GO:0000278,GO:0000793,GO:0000794,GO:0000922,GO:0001932,GO:0001934,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006355,GO:0006725,GO:0006807,GO:0007049,GO:0007088,GO:0007089,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010965,GO:0015630,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0022402,GO:0030071,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031570,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033674,GO:0034641,GO:0034645,GO:0036094,GO:0042127,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045737,GO:0045786,GO:0045787,GO:0045859,GO:0045860,GO:0045931,GO:0045934,GO:0045937,GO:0046483,GO:0048145,GO:0048146,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051233,GO:0051246,GO:0051247,GO:0051252,GO:0051302,GO:0051338,GO:0051347,GO:0051726,GO:0051781,GO:0051783,GO:0051983,GO:0051984,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1900087,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902806,GO:1902808,GO:1903047,GO:1903506,GO:1904029,GO:1904031,GO:1905818,GO:2000045,GO:2000112,GO:2000113,GO:2001141
Evalue1.76e-39
EggNOG OGsCOG1474@1|root,KOG2227@2759|Eukaryota,39N5C@33154|Opisthokonta,3BC3Y@33208|Metazoa,3CR9G@33213|Bilateria
DescriptionDNA replication initiation
COG categoryL
BRITEko00000,ko00001,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3358Ggra3358Gracilaria gracilis GNS1m malegenetig00000189_pilon 98894..100405 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3358.t1.start1Ggra3358.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 98894..98896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3358.t1.CDS1Ggra3358.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 98894..100405 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3358.t1.exon1Ggra3358.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 98894..100405 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3358.t1.stop1Ggra3358.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 100403..100405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3358.t1Ggra3358.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 98894..100405 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3358.t1 ID=Ggra3358.t1|Name=Ggra3358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp
MTRTPSRRRSARLARDPSPPARSGCIPLSVGRVRKRRCSATVRHKPPTQG
LSKAKLAGKVTTCSDPFLLPTSPCSSRADDSLMQDALEAEPAPPAVNTVN
AMSLAFEPDGLPIGREKEAHTLIQLLRESLMPDSPSKSVYVCGTPGTGKT
FTVTKVISHLRAAKSSPVIDLCSDSESISDDTHCPPIHFQNVWINCVNLQ
QPSHLYDRVARSLNLSTSGISAKSAIQNYASSCDKPVLVVLDEVDFLTSR
DQMLLYTAFEWPHIPSSQFTVIGIANSIDLPVRLLPWLRASGCMPSVLSF
KPYASDALQSIVTQRLKAGTRSGLDRIAVSLAAKKVAAASGDARLMLDVC
NEAQARLSEKPDAKAISLVAAIIDKRGGLSAAVDTIKQLPRQQQIALCVA
ANATITSGSAKATKKKATLGGLYDAFVNICEKVHVSRLSFSDFADICCNA
LAHHGLLDVPIGKSRGSRSVRTLRGRAVRLKVPVDDVRAGVAEKGFLPFL
VKK*
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spliced messenger RNA

>Ggra3358.t1 ID=Ggra3358.t1|Name=Ggra3358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000189_pilon:98894..100405+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGCACTCCGTCTCGCCGCCGCTCTGCGCGGCTCGCGCGCGATCC
TAGCCCCCCGGCACGCTCGGGCTGTATCCCGCTTTCGGTCGGACGCGTTC
GCAAGAGACGTTGCTCAGCTACCGTTCGTCACAAGCCGCCTACCCAAGGT
CTTTCCAAGGCGAAGCTTGCCGGCAAGGTTACTACTTGTTCGGACCCGTT
CTTGTTGCCTACTTCTCCATGCTCGTCACGCGCAGATGATTCGCTTATGC
AGGATGCCTTGGAAGCGGAGCCTGCACCGCCCGCCGTCAACACAGTCAAT
GCAATGTCTTTGGCTTTCGAACCGGATGGTCTGCCCATAGGCAGGGAGAA
AGAAGCTCACACCCTCATTCAGTTGTTGCGGGAGTCCCTCATGCCCGACA
GCCCCTCAAAGTCAGTGTATGTGTGCGGCACGCCTGGGACAGGGAAGACG
TTCACCGTCACAAAGGTCATCAGTCATCTACGCGCCGCAAAAAGTTCACC
TGTCATTGACCTTTGTTCTGATTCCGAGTCAATTTCAGACGATACACACT
GCCCACCGATTCACTTCCAGAACGTGTGGATTAATTGCGTGAACTTGCAA
CAACCAAGTCATCTGTATGATCGCGTTGCCCGCTCACTTAATCTATCCAC
CTCCGGTATTTCGGCGAAAAGCGCCATTCAGAACTACGCTTCTTCATGCG
ACAAACCAGTTTTGGTGGTGCTGGATGAGGTAGACTTCCTGACATCCCGC
GACCAAATGCTCCTGTATACTGCGTTTGAATGGCCTCACATCCCGTCTTC
ACAGTTCACCGTCATTGGTATTGCCAACTCAATAGACCTGCCTGTCCGTT
TACTGCCATGGCTTCGCGCATCTGGCTGCATGCCTTCTGTCCTCTCTTTC
AAACCATATGCTTCTGATGCGTTGCAATCAATCGTCACGCAAAGATTGAA
AGCTGGAACAAGAAGTGGCTTAGACCGTATTGCGGTTTCTCTCGCTGCGA
AGAAAGTGGCTGCAGCATCGGGCGACGCACGACTCATGCTCGATGTCTGT
AATGAGGCGCAGGCCCGTTTAAGCGAAAAGCCTGATGCGAAGGCAATCTC
GCTGGTGGCTGCTATTATTGACAAAAGAGGTGGCCTTTCAGCTGCTGTGG
ACACCATTAAGCAATTGCCTCGTCAACAACAGATCGCGCTGTGTGTAGCT
GCGAATGCGACAATCACCTCGGGTTCCGCCAAGGCTACCAAGAAGAAGGC
GACGCTTGGTGGTCTGTACGATGCTTTCGTGAACATATGTGAGAAGGTTC
ATGTCTCACGCTTATCGTTTTCTGATTTTGCAGACATTTGCTGCAATGCT
TTGGCCCATCACGGACTACTTGACGTGCCGATTGGGAAGTCGCGGGGCTC
AAGATCAGTGAGAACGCTTCGCGGGAGAGCAGTTCGGCTGAAGGTTCCGG
TTGACGATGTGCGGGCTGGGGTTGCTGAAAAGGGATTCTTGCCATTCTTG
GTAAAGAAATAG
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protein sequence of Ggra3358.t1

>Ggra3358.t1 ID=Ggra3358.t1|Name=Ggra3358.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=504bp
MTRTPSRRRSARLARDPSPPARSGCIPLSVGRVRKRRCSATVRHKPPTQG
LSKAKLAGKVTTCSDPFLLPTSPCSSRADDSLMQDALEAEPAPPAVNTVN
AMSLAFEPDGLPIGREKEAHTLIQLLRESLMPDSPSKSVYVCGTPGTGKT
FTVTKVISHLRAAKSSPVIDLCSDSESISDDTHCPPIHFQNVWINCVNLQ
QPSHLYDRVARSLNLSTSGISAKSAIQNYASSCDKPVLVVLDEVDFLTSR
DQMLLYTAFEWPHIPSSQFTVIGIANSIDLPVRLLPWLRASGCMPSVLSF
KPYASDALQSIVTQRLKAGTRSGLDRIAVSLAAKKVAAASGDARLMLDVC
NEAQARLSEKPDAKAISLVAAIIDKRGGLSAAVDTIKQLPRQQQIALCVA
ANATITSGSAKATKKKATLGGLYDAFVNICEKVHVSRLSFSDFADICCNA
LAHHGLLDVPIGKSRGSRSVRTLRGRAVRLKVPVDDVRAGVAEKGFLPFL
VKK*
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mRNA from alignment at tig00000189_pilon:98894..100405+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3358.t1 ID=Ggra3358.t1|Name=Ggra3358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000189_pilon:98894..100405+ (Gracilaria gracilis GNS1m male)
ATGACTCGCACTCCGTCTCGCCGCCGCTCTGCGCGGCTCGCGCGCGATCC
TAGCCCCCCGGCACGCTCGGGCTGTATCCCGCTTTCGGTCGGACGCGTTC
GCAAGAGACGTTGCTCAGCTACCGTTCGTCACAAGCCGCCTACCCAAGGT
CTTTCCAAGGCGAAGCTTGCCGGCAAGGTTACTACTTGTTCGGACCCGTT
CTTGTTGCCTACTTCTCCATGCTCGTCACGCGCAGATGATTCGCTTATGC
AGGATGCCTTGGAAGCGGAGCCTGCACCGCCCGCCGTCAACACAGTCAAT
GCAATGTCTTTGGCTTTCGAACCGGATGGTCTGCCCATAGGCAGGGAGAA
AGAAGCTCACACCCTCATTCAGTTGTTGCGGGAGTCCCTCATGCCCGACA
GCCCCTCAAAGTCAGTGTATGTGTGCGGCACGCCTGGGACAGGGAAGACG
TTCACCGTCACAAAGGTCATCAGTCATCTACGCGCCGCAAAAAGTTCACC
TGTCATTGACCTTTGTTCTGATTCCGAGTCAATTTCAGACGATACACACT
GCCCACCGATTCACTTCCAGAACGTGTGGATTAATTGCGTGAACTTGCAA
CAACCAAGTCATCTGTATGATCGCGTTGCCCGCTCACTTAATCTATCCAC
CTCCGGTATTTCGGCGAAAAGCGCCATTCAGAACTACGCTTCTTCATGCG
ACAAACCAGTTTTGGTGGTGCTGGATGAGGTAGACTTCCTGACATCCCGC
GACCAAATGCTCCTGTATACTGCGTTTGAATGGCCTCACATCCCGTCTTC
ACAGTTCACCGTCATTGGTATTGCCAACTCAATAGACCTGCCTGTCCGTT
TACTGCCATGGCTTCGCGCATCTGGCTGCATGCCTTCTGTCCTCTCTTTC
AAACCATATGCTTCTGATGCGTTGCAATCAATCGTCACGCAAAGATTGAA
AGCTGGAACAAGAAGTGGCTTAGACCGTATTGCGGTTTCTCTCGCTGCGA
AGAAAGTGGCTGCAGCATCGGGCGACGCACGACTCATGCTCGATGTCTGT
AATGAGGCGCAGGCCCGTTTAAGCGAAAAGCCTGATGCGAAGGCAATCTC
GCTGGTGGCTGCTATTATTGACAAAAGAGGTGGCCTTTCAGCTGCTGTGG
ACACCATTAAGCAATTGCCTCGTCAACAACAGATCGCGCTGTGTGTAGCT
GCGAATGCGACAATCACCTCGGGTTCCGCCAAGGCTACCAAGAAGAAGGC
GACGCTTGGTGGTCTGTACGATGCTTTCGTGAACATATGTGAGAAGGTTC
ATGTCTCACGCTTATCGTTTTCTGATTTTGCAGACATTTGCTGCAATGCT
TTGGCCCATCACGGACTACTTGACGTGCCGATTGGGAAGTCGCGGGGCTC
AAGATCAGTGAGAACGCTTCGCGGGAGAGCAGTTCGGCTGAAGGTTCCGG
TTGACGATGTGCGGGCTGGGGTTGCTGAAAAGGGATTCTTGCCATTCTTG
GTAAAGAAATAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:98894..100405+

>Ggra3358.t1 ID=Ggra3358.t1|Name=Ggra3358.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00000189_pilon:98894..100405+ (Gracilaria gracilis GNS1m male)
ATGACTCGCACTCCGTCTCGCCGCCGCTCTGCGCGGCTCGCGCGCGATCC
TAGCCCCCCGGCACGCTCGGGCTGTATCCCGCTTTCGGTCGGACGCGTTC
GCAAGAGACGTTGCTCAGCTACCGTTCGTCACAAGCCGCCTACCCAAGGT
CTTTCCAAGGCGAAGCTTGCCGGCAAGGTTACTACTTGTTCGGACCCGTT
CTTGTTGCCTACTTCTCCATGCTCGTCACGCGCAGATGATTCGCTTATGC
AGGATGCCTTGGAAGCGGAGCCTGCACCGCCCGCCGTCAACACAGTCAAT
GCAATGTCTTTGGCTTTCGAACCGGATGGTCTGCCCATAGGCAGGGAGAA
AGAAGCTCACACCCTCATTCAGTTGTTGCGGGAGTCCCTCATGCCCGACA
GCCCCTCAAAGTCAGTGTATGTGTGCGGCACGCCTGGGACAGGGAAGACG
TTCACCGTCACAAAGGTCATCAGTCATCTACGCGCCGCAAAAAGTTCACC
TGTCATTGACCTTTGTTCTGATTCCGAGTCAATTTCAGACGATACACACT
GCCCACCGATTCACTTCCAGAACGTGTGGATTAATTGCGTGAACTTGCAA
CAACCAAGTCATCTGTATGATCGCGTTGCCCGCTCACTTAATCTATCCAC
CTCCGGTATTTCGGCGAAAAGCGCCATTCAGAACTACGCTTCTTCATGCG
ACAAACCAGTTTTGGTGGTGCTGGATGAGGTAGACTTCCTGACATCCCGC
GACCAAATGCTCCTGTATACTGCGTTTGAATGGCCTCACATCCCGTCTTC
ACAGTTCACCGTCATTGGTATTGCCAACTCAATAGACCTGCCTGTCCGTT
TACTGCCATGGCTTCGCGCATCTGGCTGCATGCCTTCTGTCCTCTCTTTC
AAACCATATGCTTCTGATGCGTTGCAATCAATCGTCACGCAAAGATTGAA
AGCTGGAACAAGAAGTGGCTTAGACCGTATTGCGGTTTCTCTCGCTGCGA
AGAAAGTGGCTGCAGCATCGGGCGACGCACGACTCATGCTCGATGTCTGT
AATGAGGCGCAGGCCCGTTTAAGCGAAAAGCCTGATGCGAAGGCAATCTC
GCTGGTGGCTGCTATTATTGACAAAAGAGGTGGCCTTTCAGCTGCTGTGG
ACACCATTAAGCAATTGCCTCGTCAACAACAGATCGCGCTGTGTGTAGCT
GCGAATGCGACAATCACCTCGGGTTCCGCCAAGGCTACCAAGAAGAAGGC
GACGCTTGGTGGTCTGTACGATGCTTTCGTGAACATATGTGAGAAGGTTC
ATGTCTCACGCTTATCGTTTTCTGATTTTGCAGACATTTGCTGCAATGCT
TTGGCCCATCACGGACTACTTGACGTGCCGATTGGGAAGTCGCGGGGCTC
AAGATCAGTGAGAACGCTTCGCGGGAGAGCAGTTCGGCTGAAGGTTCCGG
TTGACGATGTGCGGGCTGGGGTTGCTGAAAAGGGATTCTTGCCATTCTTG
GTAAAGAAATAG
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