Ggra3355.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3355.t1
Unique NameGgra3355.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length67
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:92852..93146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3355Ggra3355Gracilaria gracilis GNS1m malegenetig00000189_pilon 92852..93146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3355.t1Ggra3355.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 92852..93146 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3355.t1.start1Ggra3355.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 92852..92854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3355.t1.CDS1Ggra3355.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 92852..92935 +
Ggra3355.t1.CDS2Ggra3355.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000189_pilon 93030..93146 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3355.t1.exon1Ggra3355.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 92852..92935 +
Ggra3355.t1.exon2Ggra3355.t1.exon2Gracilaria gracilis GNS1m maleexontig00000189_pilon 93030..93146 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3355.t1.intron1Ggra3355.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000189_pilon 92936..93029 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3355.t1.stop1Ggra3355.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 93144..93146 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3355.t1 ID=Ggra3355.t1|Name=Ggra3355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=67bp
MGGGVVRAAANQVSATKEILMGAAVAIAGGFVWRAWHLSYKASVDDYYKK
LAAEEAAAAAAAPTSS*
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spliced messenger RNA

>Ggra3355.t1 ID=Ggra3355.t1|Name=Ggra3355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=201bp|location=Sequence derived from alignment at tig00000189_pilon:92852..93146+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGCGGTGTCGTGCGCGCAGCAGCAAACCAGGTTAGCGCCACCAA
GGAGATCCTGATGGGTGCTGCGGTCGCTATTGCTGGTGGTTTTGTGTGGC
GTGCATGGCATCTTTCTTACAAGGCTTCTGTCGATGACTACTACAAAAAG
CTGGCTGCCGAGGAGGCAGCCGCAGCGGCTGCTGCTCCTACTTCGTCGTA
A
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protein sequence of Ggra3355.t1

>Ggra3355.t1 ID=Ggra3355.t1|Name=Ggra3355.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=67bp
MGGGVVRAAANQVSATKEILMGAAVAIAGGFVWRAWHLSYKASVDDYYKK
LAAEEAAAAAAAPTSS*
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mRNA from alignment at tig00000189_pilon:92852..93146+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3355.t1 ID=Ggra3355.t1|Name=Ggra3355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp|location=Sequence derived from alignment at tig00000189_pilon:92852..93146+ (Gracilaria gracilis GNS1m male)
ATGGGCGGCGGTGTCGTGCGCGCAGCAGCAAACCAGGTTAGCGCCACCAA
GGAGATCCTGATGGGTGCTGCGGTCGCTATTGCTGTACGTCACAGTTTTC
CATCCCAACTGTAGACGTCAATATCGTGTTCTGACTGGTACCGATTTGTT
TTCGATTCATCTGCTTCCGTGCACACAGGGTGGTTTTGTGTGGCGTGCAT
GGCATCTTTCTTACAAGGCTTCTGTCGATGACTACTACAAAAAGCTGGCT
GCCGAGGAGGCAGCCGCAGCGGCTGCTGCTCCTACTTCGTCGTAA
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Coding sequence (CDS) from alignment at tig00000189_pilon:92852..93146+

>Ggra3355.t1 ID=Ggra3355.t1|Name=Ggra3355.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=201bp|location=Sequence derived from alignment at tig00000189_pilon:92852..93146+ (Gracilaria gracilis GNS1m male)
ATGGGCGGCGGTGTCGTGCGCGCAGCAGCAAACCAGGTTAGCGCCACCAA
GGAGATCCTGATGGGTGCTGCGGTCGCTATTGCTGGTGGTTTTGTGTGGC
GTGCATGGCATCTTTCTTACAAGGCTTCTGTCGATGACTACTACAAAAAG
CTGGCTGCCGAGGAGGCAGCCGCAGCGGCTGCTGCTCCTACTTCGTCGTA
A
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