Ggra3351.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3351.t1
Unique NameGgra3351.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:82485..83600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1218075.BAYA01000005_gene1705
Preferred nameldhA
PFAMs2-Hacid_dh,2-Hacid_dh_C
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00044
KEGG koko:K03778
KEGG ReactionR00704
KEGG Pathwayko00620,ko01120,map00620,map01120
Evalue1.31e-81
EggNOG OGsCOG1052@1|root,COG1052@2|Bacteria,1MVSS@1224|Proteobacteria,2VIB3@28216|Betaproteobacteria,1K1XW@119060|Burkholderiaceae
EC1.1.1.28
DescriptionD-isomer specific 2-hydroxyacid dehydrogenase
COG categoryCH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3351Ggra3351Gracilaria gracilis GNS1m malegenetig00000189_pilon 82485..83600 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3351.t1.stop1Ggra3351.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 82485..82487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3351.t1.CDS1Ggra3351.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 82485..83600 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3351.t1.exon1Ggra3351.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 82485..83600 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3351.t1.start1Ggra3351.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 83598..83600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3351.t1Ggra3351.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 82485..83600 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3351.t1 ID=Ggra3351.t1|Name=Ggra3351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp
MHDDHTPVKHVQIAPLPQPQMALLHNLRSLRVIVFSALPFEIEAFQSEIE
LAGASSFIEILPVQGALEDATVSLALGAQVVCVFATDRVHKNMLHALKTC
GVELLAFRYSAAMAFSDEQAFELGFRIARPPSHSPTSVAEYTVSLLMTLN
RKIHVAHNRIRDGNFRLHGLMGFELSGKTVGIIGTGLVGRCVAKILSGFG
CRILAFDLVECKQVLDVGGRYVSLKKLLASSHILSLHAPLMAATRHLVGA
NALATCMRGVVIVNTARGALVDIDAVINGLRSGQVGGLAMDVYEGETSVF
FKDRTGDVVDMNLQVLKSMPNVLLTGHQSALTREAITSVARNLVRCMIQF
RMGMQMDYEVKPEAEPSAALG*
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spliced messenger RNA

>Ggra3351.t1 ID=Ggra3351.t1|Name=Ggra3351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000189_pilon:82485..83600- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGACGACCACACGCCCGTCAAGCACGTTCAAATAGCGCCGCTGCC
GCAGCCGCAGATGGCGCTGTTGCACAACTTGCGCTCACTCAGGGTCATAG
TGTTTTCGGCGCTGCCGTTCGAGATCGAGGCCTTTCAGTCCGAGATCGAG
TTGGCGGGCGCGTCGTCCTTCATCGAGATCCTCCCGGTGCAAGGCGCCTT
GGAGGATGCCACCGTGTCGTTAGCGCTGGGCGCTCAGGTGGTGTGCGTGT
TTGCCACCGACCGCGTACACAAGAACATGTTGCACGCGCTCAAGACGTGC
GGCGTTGAGTTGCTTGCGTTTCGATACTCGGCCGCTATGGCCTTCTCCGA
TGAACAAGCGTTTGAACTCGGTTTTCGAATAGCCCGACCTCCCTCACATT
CGCCCACCAGCGTGGCCGAGTACACCGTTTCTCTCCTCATGACGCTCAAT
CGCAAGATTCACGTCGCGCACAATCGCATCCGCGACGGAAACTTCCGCCT
TCATGGGCTCATGGGCTTCGAATTGTCTGGAAAGACTGTGGGTATCATCG
GCACCGGTCTGGTTGGACGCTGCGTTGCCAAGATCCTCAGCGGCTTTGGC
TGCCGCATTCTGGCGTTTGATCTGGTAGAGTGCAAGCAGGTGCTCGATGT
CGGCGGTCGCTACGTGTCGTTGAAGAAGCTTCTGGCGTCTTCGCACATTC
TGTCGCTGCATGCGCCGCTCATGGCGGCCACACGGCACTTGGTTGGCGCC
AACGCGCTGGCTACTTGTATGAGGGGCGTGGTGATCGTCAATACCGCGCG
CGGCGCCTTGGTGGACATTGACGCAGTGATTAATGGCTTGAGGAGCGGCC
AAGTTGGCGGTCTTGCGATGGATGTTTATGAGGGGGAGACGTCAGTGTTC
TTCAAGGACCGAACCGGAGACGTAGTGGATATGAATCTTCAGGTGCTCAA
GTCTATGCCCAACGTGCTGCTGACGGGTCATCAGTCGGCGCTCACCAGGG
AAGCTATCACATCGGTGGCGAGAAATTTGGTGAGATGTATGATTCAGTTT
AGGATGGGCATGCAAATGGACTATGAAGTAAAGCCGGAAGCTGAGCCGTC
GGCAGCACTGGGATAA
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protein sequence of Ggra3351.t1

>Ggra3351.t1 ID=Ggra3351.t1|Name=Ggra3351.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=372bp
MHDDHTPVKHVQIAPLPQPQMALLHNLRSLRVIVFSALPFEIEAFQSEIE
LAGASSFIEILPVQGALEDATVSLALGAQVVCVFATDRVHKNMLHALKTC
GVELLAFRYSAAMAFSDEQAFELGFRIARPPSHSPTSVAEYTVSLLMTLN
RKIHVAHNRIRDGNFRLHGLMGFELSGKTVGIIGTGLVGRCVAKILSGFG
CRILAFDLVECKQVLDVGGRYVSLKKLLASSHILSLHAPLMAATRHLVGA
NALATCMRGVVIVNTARGALVDIDAVINGLRSGQVGGLAMDVYEGETSVF
FKDRTGDVVDMNLQVLKSMPNVLLTGHQSALTREAITSVARNLVRCMIQF
RMGMQMDYEVKPEAEPSAALG*
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mRNA from alignment at tig00000189_pilon:82485..83600-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3351.t1 ID=Ggra3351.t1|Name=Ggra3351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000189_pilon:82485..83600- (Gracilaria gracilis GNS1m male)
ATGCACGACGACCACACGCCCGTCAAGCACGTTCAAATAGCGCCGCTGCC
GCAGCCGCAGATGGCGCTGTTGCACAACTTGCGCTCACTCAGGGTCATAG
TGTTTTCGGCGCTGCCGTTCGAGATCGAGGCCTTTCAGTCCGAGATCGAG
TTGGCGGGCGCGTCGTCCTTCATCGAGATCCTCCCGGTGCAAGGCGCCTT
GGAGGATGCCACCGTGTCGTTAGCGCTGGGCGCTCAGGTGGTGTGCGTGT
TTGCCACCGACCGCGTACACAAGAACATGTTGCACGCGCTCAAGACGTGC
GGCGTTGAGTTGCTTGCGTTTCGATACTCGGCCGCTATGGCCTTCTCCGA
TGAACAAGCGTTTGAACTCGGTTTTCGAATAGCCCGACCTCCCTCACATT
CGCCCACCAGCGTGGCCGAGTACACCGTTTCTCTCCTCATGACGCTCAAT
CGCAAGATTCACGTCGCGCACAATCGCATCCGCGACGGAAACTTCCGCCT
TCATGGGCTCATGGGCTTCGAATTGTCTGGAAAGACTGTGGGTATCATCG
GCACCGGTCTGGTTGGACGCTGCGTTGCCAAGATCCTCAGCGGCTTTGGC
TGCCGCATTCTGGCGTTTGATCTGGTAGAGTGCAAGCAGGTGCTCGATGT
CGGCGGTCGCTACGTGTCGTTGAAGAAGCTTCTGGCGTCTTCGCACATTC
TGTCGCTGCATGCGCCGCTCATGGCGGCCACACGGCACTTGGTTGGCGCC
AACGCGCTGGCTACTTGTATGAGGGGCGTGGTGATCGTCAATACCGCGCG
CGGCGCCTTGGTGGACATTGACGCAGTGATTAATGGCTTGAGGAGCGGCC
AAGTTGGCGGTCTTGCGATGGATGTTTATGAGGGGGAGACGTCAGTGTTC
TTCAAGGACCGAACCGGAGACGTAGTGGATATGAATCTTCAGGTGCTCAA
GTCTATGCCCAACGTGCTGCTGACGGGTCATCAGTCGGCGCTCACCAGGG
AAGCTATCACATCGGTGGCGAGAAATTTGGTGAGATGTATGATTCAGTTT
AGGATGGGCATGCAAATGGACTATGAAGTAAAGCCGGAAGCTGAGCCGTC
GGCAGCACTGGGATAA
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Coding sequence (CDS) from alignment at tig00000189_pilon:82485..83600-

>Ggra3351.t1 ID=Ggra3351.t1|Name=Ggra3351.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00000189_pilon:82485..83600- (Gracilaria gracilis GNS1m male)
ATGCACGACGACCACACGCCCGTCAAGCACGTTCAAATAGCGCCGCTGCC
GCAGCCGCAGATGGCGCTGTTGCACAACTTGCGCTCACTCAGGGTCATAG
TGTTTTCGGCGCTGCCGTTCGAGATCGAGGCCTTTCAGTCCGAGATCGAG
TTGGCGGGCGCGTCGTCCTTCATCGAGATCCTCCCGGTGCAAGGCGCCTT
GGAGGATGCCACCGTGTCGTTAGCGCTGGGCGCTCAGGTGGTGTGCGTGT
TTGCCACCGACCGCGTACACAAGAACATGTTGCACGCGCTCAAGACGTGC
GGCGTTGAGTTGCTTGCGTTTCGATACTCGGCCGCTATGGCCTTCTCCGA
TGAACAAGCGTTTGAACTCGGTTTTCGAATAGCCCGACCTCCCTCACATT
CGCCCACCAGCGTGGCCGAGTACACCGTTTCTCTCCTCATGACGCTCAAT
CGCAAGATTCACGTCGCGCACAATCGCATCCGCGACGGAAACTTCCGCCT
TCATGGGCTCATGGGCTTCGAATTGTCTGGAAAGACTGTGGGTATCATCG
GCACCGGTCTGGTTGGACGCTGCGTTGCCAAGATCCTCAGCGGCTTTGGC
TGCCGCATTCTGGCGTTTGATCTGGTAGAGTGCAAGCAGGTGCTCGATGT
CGGCGGTCGCTACGTGTCGTTGAAGAAGCTTCTGGCGTCTTCGCACATTC
TGTCGCTGCATGCGCCGCTCATGGCGGCCACACGGCACTTGGTTGGCGCC
AACGCGCTGGCTACTTGTATGAGGGGCGTGGTGATCGTCAATACCGCGCG
CGGCGCCTTGGTGGACATTGACGCAGTGATTAATGGCTTGAGGAGCGGCC
AAGTTGGCGGTCTTGCGATGGATGTTTATGAGGGGGAGACGTCAGTGTTC
TTCAAGGACCGAACCGGAGACGTAGTGGATATGAATCTTCAGGTGCTCAA
GTCTATGCCCAACGTGCTGCTGACGGGTCATCAGTCGGCGCTCACCAGGG
AAGCTATCACATCGGTGGCGAGAAATTTGGTGAGATGTATGATTCAGTTT
AGGATGGGCATGCAAATGGACTATGAAGTAAAGCCGGAAGCTGAGCCGTC
GGCAGCACTGGGATAA
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