Ggra3348.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3348.t1
Unique NameGgra3348.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:77693..79240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705733.1
Preferred namecdc28
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind,PWI
Max annot lvl2759|Eukaryota
KEGG koko:K12813,ko:K12814
KEGG Pathwayko03040,map03040
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016074,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034247,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042623,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070035,GO:0071006,GO:0071012,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Evalue1.49e-244
EggNOG OGsCOG1643@1|root,KOG0923@2759|Eukaryota
EC3.6.4.13
DescriptionATP-dependent RNA helicase activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3348Ggra3348Gracilaria gracilis GNS1m malegenetig00000189_pilon 77693..79240 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3348.t1.start1Ggra3348.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 77693..77695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3348.t1.CDS1Ggra3348.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 77693..79240 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3348.t1.exon1Ggra3348.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 77693..79240 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3348.t1.stop1Ggra3348.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 79238..79240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3348.t1Ggra3348.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 77693..79240 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3348.t1 ID=Ggra3348.t1|Name=Ggra3348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=516bp
MGLIKDIARFRGDDVRIIISSATMDTAKFSSYFDDAPVYSIPGRRYDVDM
YYTKTPEPDYVEASCITVLQIHASQPQGDILVFLTGQEEIEAAEEILHER
TRGLGSKLDELIIAPIYATLPSEMQAKIFEETPENARKVVLATNIAETSV
TIPGIVYVIDPGFCKQKSYNPKTGMESLLVVPVSRAGAKQRAGRAGRTQP
GKCFRLYTKWSYAHEMDEDTIPELLRTNLSQVVLLLLSLGIENLVEFDFI
DAPPPEALLRSLEHLYALGALNDKGKLTKLGRRMAELPLEPMMAKALLAS
EKYKCSEEVTIICSMLSVNNAVFYRPKQKKVMAESAHAAFARGGGGDHMC
LLRCYAQWRDSGFSNHWCYEHFVQTRTMKRARDVYEQLDQLLDRVEIERH
SVGVGDKVPVLKALTSGFFYNACRLQKNGHYRTMKNPHTVRVHPSSCLAH
AEVKPKWLIYHELVFTTKEFMRQVFDIDGPWLHEVAPHFHKLEDILEESK
RKMPKVLGKVGGKVR*
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spliced messenger RNA

>Ggra3348.t1 ID=Ggra3348.t1|Name=Ggra3348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000189_pilon:77693..79240+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTCATAAAGGATATTGCCCGCTTCCGGGGTGATGACGTGCGAAT
CATAATTTCGTCAGCTACAATGGACACGGCGAAGTTTTCATCATACTTCG
ACGATGCCCCAGTGTATTCGATACCTGGTCGTCGATATGATGTTGACATG
TACTATACGAAAACTCCTGAGCCAGACTATGTTGAAGCTAGCTGTATCAC
CGTTCTTCAGATCCATGCATCTCAGCCTCAGGGCGACATTCTTGTTTTCC
TGACAGGTCAGGAAGAGATTGAAGCCGCCGAAGAAATCTTACACGAGCGT
ACGAGAGGATTAGGGTCCAAACTTGATGAACTCATCATTGCTCCAATATA
CGCCACGCTACCTTCAGAGATGCAAGCAAAAATCTTTGAAGAGACTCCGG
AAAACGCGCGCAAGGTTGTACTCGCTACGAACATCGCCGAGACTTCTGTC
ACCATTCCAGGAATTGTGTATGTAATCGATCCCGGGTTCTGTAAGCAAAA
GTCGTATAACCCCAAGACTGGAATGGAGAGTCTGTTGGTCGTGCCTGTTT
CGAGGGCAGGAGCGAAGCAGAGAGCCGGTCGAGCGGGAAGAACACAGCCG
GGAAAATGTTTTCGCTTGTACACCAAATGGTCCTATGCACATGAAATGGA
TGAGGACACAATCCCAGAGTTGCTTAGAACCAATCTGAGTCAGGTTGTGT
TGCTCTTGTTATCACTTGGAATTGAGAACCTGGTCGAGTTCGACTTTATC
GACGCCCCACCACCGGAAGCCCTGCTCCGCTCCTTGGAACATTTATATGC
ATTGGGTGCCCTGAATGACAAAGGAAAGTTAACCAAACTGGGAAGGAGAA
TGGCGGAGCTCCCTCTTGAACCAATGATGGCAAAGGCTTTACTTGCAAGT
GAGAAGTACAAGTGTTCCGAGGAAGTGACCATAATCTGTTCCATGCTTAG
TGTGAACAACGCTGTTTTCTATCGACCCAAGCAGAAGAAGGTGATGGCAG
AAAGTGCCCATGCGGCGTTTGCGAGAGGCGGAGGCGGTGATCACATGTGC
TTGTTGCGATGCTATGCTCAATGGCGTGATTCGGGCTTCTCAAATCACTG
GTGTTACGAACATTTTGTACAGACTAGAACGATGAAACGAGCGCGCGACG
TCTACGAGCAACTAGACCAGCTATTAGATAGAGTTGAGATTGAAAGGCAT
TCAGTCGGCGTTGGTGACAAGGTTCCAGTTTTGAAAGCGTTAACTTCTGG
GTTTTTCTACAATGCCTGCCGTCTTCAGAAAAACGGCCACTATAGAACAA
TGAAGAACCCCCACACGGTGCGAGTACATCCATCGAGCTGCTTAGCACAT
GCGGAAGTGAAACCCAAGTGGTTGATCTACCACGAATTGGTGTTTACTAC
CAAGGAATTCATGAGGCAGGTGTTTGATATTGACGGCCCATGGTTGCATG
AGGTAGCGCCCCATTTCCATAAGCTGGAAGACATATTAGAAGAGTCAAAA
CGCAAGATGCCAAAAGTCTTGGGCAAGGTCGGCGGCAAAGTAAGGTGA
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protein sequence of Ggra3348.t1

>Ggra3348.t1 ID=Ggra3348.t1|Name=Ggra3348.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=516bp
MGLIKDIARFRGDDVRIIISSATMDTAKFSSYFDDAPVYSIPGRRYDVDM
YYTKTPEPDYVEASCITVLQIHASQPQGDILVFLTGQEEIEAAEEILHER
TRGLGSKLDELIIAPIYATLPSEMQAKIFEETPENARKVVLATNIAETSV
TIPGIVYVIDPGFCKQKSYNPKTGMESLLVVPVSRAGAKQRAGRAGRTQP
GKCFRLYTKWSYAHEMDEDTIPELLRTNLSQVVLLLLSLGIENLVEFDFI
DAPPPEALLRSLEHLYALGALNDKGKLTKLGRRMAELPLEPMMAKALLAS
EKYKCSEEVTIICSMLSVNNAVFYRPKQKKVMAESAHAAFARGGGGDHMC
LLRCYAQWRDSGFSNHWCYEHFVQTRTMKRARDVYEQLDQLLDRVEIERH
SVGVGDKVPVLKALTSGFFYNACRLQKNGHYRTMKNPHTVRVHPSSCLAH
AEVKPKWLIYHELVFTTKEFMRQVFDIDGPWLHEVAPHFHKLEDILEESK
RKMPKVLGKVGGKVR*
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mRNA from alignment at tig00000189_pilon:77693..79240+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3348.t1 ID=Ggra3348.t1|Name=Ggra3348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000189_pilon:77693..79240+ (Gracilaria gracilis GNS1m male)
ATGGGGCTCATAAAGGATATTGCCCGCTTCCGGGGTGATGACGTGCGAAT
CATAATTTCGTCAGCTACAATGGACACGGCGAAGTTTTCATCATACTTCG
ACGATGCCCCAGTGTATTCGATACCTGGTCGTCGATATGATGTTGACATG
TACTATACGAAAACTCCTGAGCCAGACTATGTTGAAGCTAGCTGTATCAC
CGTTCTTCAGATCCATGCATCTCAGCCTCAGGGCGACATTCTTGTTTTCC
TGACAGGTCAGGAAGAGATTGAAGCCGCCGAAGAAATCTTACACGAGCGT
ACGAGAGGATTAGGGTCCAAACTTGATGAACTCATCATTGCTCCAATATA
CGCCACGCTACCTTCAGAGATGCAAGCAAAAATCTTTGAAGAGACTCCGG
AAAACGCGCGCAAGGTTGTACTCGCTACGAACATCGCCGAGACTTCTGTC
ACCATTCCAGGAATTGTGTATGTAATCGATCCCGGGTTCTGTAAGCAAAA
GTCGTATAACCCCAAGACTGGAATGGAGAGTCTGTTGGTCGTGCCTGTTT
CGAGGGCAGGAGCGAAGCAGAGAGCCGGTCGAGCGGGAAGAACACAGCCG
GGAAAATGTTTTCGCTTGTACACCAAATGGTCCTATGCACATGAAATGGA
TGAGGACACAATCCCAGAGTTGCTTAGAACCAATCTGAGTCAGGTTGTGT
TGCTCTTGTTATCACTTGGAATTGAGAACCTGGTCGAGTTCGACTTTATC
GACGCCCCACCACCGGAAGCCCTGCTCCGCTCCTTGGAACATTTATATGC
ATTGGGTGCCCTGAATGACAAAGGAAAGTTAACCAAACTGGGAAGGAGAA
TGGCGGAGCTCCCTCTTGAACCAATGATGGCAAAGGCTTTACTTGCAAGT
GAGAAGTACAAGTGTTCCGAGGAAGTGACCATAATCTGTTCCATGCTTAG
TGTGAACAACGCTGTTTTCTATCGACCCAAGCAGAAGAAGGTGATGGCAG
AAAGTGCCCATGCGGCGTTTGCGAGAGGCGGAGGCGGTGATCACATGTGC
TTGTTGCGATGCTATGCTCAATGGCGTGATTCGGGCTTCTCAAATCACTG
GTGTTACGAACATTTTGTACAGACTAGAACGATGAAACGAGCGCGCGACG
TCTACGAGCAACTAGACCAGCTATTAGATAGAGTTGAGATTGAAAGGCAT
TCAGTCGGCGTTGGTGACAAGGTTCCAGTTTTGAAAGCGTTAACTTCTGG
GTTTTTCTACAATGCCTGCCGTCTTCAGAAAAACGGCCACTATAGAACAA
TGAAGAACCCCCACACGGTGCGAGTACATCCATCGAGCTGCTTAGCACAT
GCGGAAGTGAAACCCAAGTGGTTGATCTACCACGAATTGGTGTTTACTAC
CAAGGAATTCATGAGGCAGGTGTTTGATATTGACGGCCCATGGTTGCATG
AGGTAGCGCCCCATTTCCATAAGCTGGAAGACATATTAGAAGAGTCAAAA
CGCAAGATGCCAAAAGTCTTGGGCAAGGTCGGCGGCAAAGTAAGGTGA
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Coding sequence (CDS) from alignment at tig00000189_pilon:77693..79240+

>Ggra3348.t1 ID=Ggra3348.t1|Name=Ggra3348.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1548bp|location=Sequence derived from alignment at tig00000189_pilon:77693..79240+ (Gracilaria gracilis GNS1m male)
ATGGGGCTCATAAAGGATATTGCCCGCTTCCGGGGTGATGACGTGCGAAT
CATAATTTCGTCAGCTACAATGGACACGGCGAAGTTTTCATCATACTTCG
ACGATGCCCCAGTGTATTCGATACCTGGTCGTCGATATGATGTTGACATG
TACTATACGAAAACTCCTGAGCCAGACTATGTTGAAGCTAGCTGTATCAC
CGTTCTTCAGATCCATGCATCTCAGCCTCAGGGCGACATTCTTGTTTTCC
TGACAGGTCAGGAAGAGATTGAAGCCGCCGAAGAAATCTTACACGAGCGT
ACGAGAGGATTAGGGTCCAAACTTGATGAACTCATCATTGCTCCAATATA
CGCCACGCTACCTTCAGAGATGCAAGCAAAAATCTTTGAAGAGACTCCGG
AAAACGCGCGCAAGGTTGTACTCGCTACGAACATCGCCGAGACTTCTGTC
ACCATTCCAGGAATTGTGTATGTAATCGATCCCGGGTTCTGTAAGCAAAA
GTCGTATAACCCCAAGACTGGAATGGAGAGTCTGTTGGTCGTGCCTGTTT
CGAGGGCAGGAGCGAAGCAGAGAGCCGGTCGAGCGGGAAGAACACAGCCG
GGAAAATGTTTTCGCTTGTACACCAAATGGTCCTATGCACATGAAATGGA
TGAGGACACAATCCCAGAGTTGCTTAGAACCAATCTGAGTCAGGTTGTGT
TGCTCTTGTTATCACTTGGAATTGAGAACCTGGTCGAGTTCGACTTTATC
GACGCCCCACCACCGGAAGCCCTGCTCCGCTCCTTGGAACATTTATATGC
ATTGGGTGCCCTGAATGACAAAGGAAAGTTAACCAAACTGGGAAGGAGAA
TGGCGGAGCTCCCTCTTGAACCAATGATGGCAAAGGCTTTACTTGCAAGT
GAGAAGTACAAGTGTTCCGAGGAAGTGACCATAATCTGTTCCATGCTTAG
TGTGAACAACGCTGTTTTCTATCGACCCAAGCAGAAGAAGGTGATGGCAG
AAAGTGCCCATGCGGCGTTTGCGAGAGGCGGAGGCGGTGATCACATGTGC
TTGTTGCGATGCTATGCTCAATGGCGTGATTCGGGCTTCTCAAATCACTG
GTGTTACGAACATTTTGTACAGACTAGAACGATGAAACGAGCGCGCGACG
TCTACGAGCAACTAGACCAGCTATTAGATAGAGTTGAGATTGAAAGGCAT
TCAGTCGGCGTTGGTGACAAGGTTCCAGTTTTGAAAGCGTTAACTTCTGG
GTTTTTCTACAATGCCTGCCGTCTTCAGAAAAACGGCCACTATAGAACAA
TGAAGAACCCCCACACGGTGCGAGTACATCCATCGAGCTGCTTAGCACAT
GCGGAAGTGAAACCCAAGTGGTTGATCTACCACGAATTGGTGTTTACTAC
CAAGGAATTCATGAGGCAGGTGTTTGATATTGACGGCCCATGGTTGCATG
AGGTAGCGCCCCATTTCCATAAGCTGGAAGACATATTAGAAGAGTCAAAA
CGCAAGATGCCAAAAGTCTTGGGCAAGGTCGGCGGCAAAGTAAGGTGA
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