Ggra3347.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3347.t1
Unique NameGgra3347.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:75227..76336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703703.1
Preferred nameGALT
PFAMsGalP_UDP_tr_C,GalP_UDP_transf
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00965,ko:K20718
KEGG ReactionR00955
KEGG Pathwayko00052,ko00520,ko01100,ko04016,ko04917,map00052,map00520,map01100,map04016,map04917
KEGG ModuleM00362,M00554,M00632
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004335,GO:0005488,GO:0005506,GO:0005534,GO:0005536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005975,GO:0005996,GO:0006011,GO:0006012,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006258,GO:0006464,GO:0006486,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0007610,GO:0007626,GO:0008108,GO:0008150,GO:0008152,GO:0008198,GO:0008270,GO:0008344,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009225,GO:0009226,GO:0009227,GO:0009259,GO:0009260,GO:0009987,GO:0010646,GO:0010647,GO:0012505,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0017076,GO:0017144,GO:0018130,GO:0019200,GO:0019318,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019388,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0030246,GO:0030534,GO:0030554,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032501,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033499,GO:0033500,GO:0033501,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034656,GO:0036094,GO:0036211,GO:0042125,GO:0042592,GO:0042866,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043436,GO:0043531,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046835,GO:0046872,GO:0046914,GO:0046939,GO:0047345,GO:0048029,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048878,GO:0050789,GO:0050794,GO:0051186,GO:0051188,GO:0052573,GO:0052574,GO:0055086,GO:0061615,GO:0061620,GO:0061622,GO:0061623,GO:0065007,GO:0065008,GO:0070085,GO:0070566,GO:0070569,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080040,GO:0080134,GO:0080135,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901136,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue4.54e-151
EggNOG OGsCOG1085@1|root,KOG2958@2759|Eukaryota
EC2.7.11.1,2.7.7.12
DescriptionUDP-glucose:hexose-1-phosphate uridylyltransferase activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3347Ggra3347Gracilaria gracilis GNS1m malegenetig00000189_pilon 75227..76336 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3347.t1.stop1Ggra3347.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 75227..75229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3347.t1.CDS1Ggra3347.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 75227..76336 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3347.t1.exon1Ggra3347.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 75227..76336 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3347.t1.start1Ggra3347.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 76334..76336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3347.t1Ggra3347.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 75227..76336 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3347.t1 ID=Ggra3347.t1|Name=Ggra3347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=370bp
MSASFDYTEHPHRRYNPLSARWILCSPHRAKRPWQGSVEDLPPDERPEYD
PKDYLGPGNFRVNGSVQNPKYDTTFVFDNDFQALLDNTPHGEVGSVEDND
LLVAKAVRGKCRVVCFSPKLNLTVAEMTVEEIKHVVDAWLEEYDTLSKLD
YIGHVQIFENKGQMMGCSNPHPHGQIWASEFVPEEPRIVLENLKAYHEKK
GTHMLEDYVKIEMEAKERIVCENDTFLAVVPFWATWPFEVLVMTKKRVPC
LKNFNEAMKSDLADIYRRVCARYDNLFTTLFPYSMGIHQSPTTNGTDPAK
HDYAHFHMHFYPPLLRSATVRKFMVGFEMLGESQRDLTAEQAAARLRACS
EVHYNHARKKVEGNGDASK*
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spliced messenger RNA

>Ggra3347.t1 ID=Ggra3347.t1|Name=Ggra3347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000189_pilon:75227..76336- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCAGCTTCGACTACACCGAGCACCCCCATCGTCGCTACAACCC
GCTCTCAGCGCGCTGGATTCTGTGCTCACCCCATCGCGCGAAGCGTCCGT
GGCAGGGCAGCGTTGAAGATCTGCCGCCTGATGAGCGTCCTGAGTACGAT
CCCAAGGACTACTTGGGGCCGGGAAACTTTCGTGTGAACGGCTCCGTGCA
GAACCCCAAGTACGATACCACTTTCGTGTTTGACAATGACTTCCAGGCTT
TGCTGGATAACACGCCGCACGGCGAAGTTGGCAGCGTAGAAGACAATGAT
CTGCTCGTCGCAAAAGCTGTGCGTGGAAAGTGTCGCGTCGTCTGCTTCTC
TCCGAAGCTCAATCTCACAGTCGCCGAGATGACAGTCGAAGAAATCAAAC
ATGTCGTCGATGCCTGGCTTGAGGAATATGACACCCTCTCCAAGTTGGAC
TATATCGGCCATGTGCAGATCTTCGAGAACAAGGGGCAGATGATGGGATG
CTCAAACCCACATCCTCACGGCCAAATCTGGGCTTCGGAGTTTGTACCGG
AGGAACCTCGCATTGTATTGGAGAACCTCAAGGCGTATCATGAAAAGAAG
GGTACCCATATGTTAGAAGACTATGTCAAGATCGAGATGGAAGCTAAGGA
ACGAATCGTCTGTGAAAATGACACCTTCCTTGCCGTCGTGCCCTTCTGGG
CAACCTGGCCATTTGAGGTGTTGGTTATGACCAAGAAACGCGTACCATGC
CTCAAGAACTTCAACGAAGCCATGAAGAGCGATCTCGCCGATATCTATCG
TCGTGTTTGTGCACGATATGACAACCTGTTCACCACCCTTTTCCCTTACT
CTATGGGTATTCATCAGTCACCTACTACCAATGGTACTGATCCCGCGAAG
CATGATTATGCGCACTTTCACATGCACTTCTATCCGCCTCTGCTCCGAAG
TGCGACAGTTAGGAAATTCATGGTTGGCTTCGAGATGCTTGGCGAATCAC
AAAGAGATTTGACCGCAGAGCAAGCCGCGGCGAGACTGCGTGCCTGCTCT
GAAGTGCATTATAACCATGCCCGAAAGAAGGTTGAAGGCAATGGTGACGC
TTCTAAGTGA
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protein sequence of Ggra3347.t1

>Ggra3347.t1 ID=Ggra3347.t1|Name=Ggra3347.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=370bp
MSASFDYTEHPHRRYNPLSARWILCSPHRAKRPWQGSVEDLPPDERPEYD
PKDYLGPGNFRVNGSVQNPKYDTTFVFDNDFQALLDNTPHGEVGSVEDND
LLVAKAVRGKCRVVCFSPKLNLTVAEMTVEEIKHVVDAWLEEYDTLSKLD
YIGHVQIFENKGQMMGCSNPHPHGQIWASEFVPEEPRIVLENLKAYHEKK
GTHMLEDYVKIEMEAKERIVCENDTFLAVVPFWATWPFEVLVMTKKRVPC
LKNFNEAMKSDLADIYRRVCARYDNLFTTLFPYSMGIHQSPTTNGTDPAK
HDYAHFHMHFYPPLLRSATVRKFMVGFEMLGESQRDLTAEQAAARLRACS
EVHYNHARKKVEGNGDASK*
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mRNA from alignment at tig00000189_pilon:75227..76336-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3347.t1 ID=Ggra3347.t1|Name=Ggra3347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000189_pilon:75227..76336- (Gracilaria gracilis GNS1m male)
ATGTCTGCCAGCTTCGACTACACCGAGCACCCCCATCGTCGCTACAACCC
GCTCTCAGCGCGCTGGATTCTGTGCTCACCCCATCGCGCGAAGCGTCCGT
GGCAGGGCAGCGTTGAAGATCTGCCGCCTGATGAGCGTCCTGAGTACGAT
CCCAAGGACTACTTGGGGCCGGGAAACTTTCGTGTGAACGGCTCCGTGCA
GAACCCCAAGTACGATACCACTTTCGTGTTTGACAATGACTTCCAGGCTT
TGCTGGATAACACGCCGCACGGCGAAGTTGGCAGCGTAGAAGACAATGAT
CTGCTCGTCGCAAAAGCTGTGCGTGGAAAGTGTCGCGTCGTCTGCTTCTC
TCCGAAGCTCAATCTCACAGTCGCCGAGATGACAGTCGAAGAAATCAAAC
ATGTCGTCGATGCCTGGCTTGAGGAATATGACACCCTCTCCAAGTTGGAC
TATATCGGCCATGTGCAGATCTTCGAGAACAAGGGGCAGATGATGGGATG
CTCAAACCCACATCCTCACGGCCAAATCTGGGCTTCGGAGTTTGTACCGG
AGGAACCTCGCATTGTATTGGAGAACCTCAAGGCGTATCATGAAAAGAAG
GGTACCCATATGTTAGAAGACTATGTCAAGATCGAGATGGAAGCTAAGGA
ACGAATCGTCTGTGAAAATGACACCTTCCTTGCCGTCGTGCCCTTCTGGG
CAACCTGGCCATTTGAGGTGTTGGTTATGACCAAGAAACGCGTACCATGC
CTCAAGAACTTCAACGAAGCCATGAAGAGCGATCTCGCCGATATCTATCG
TCGTGTTTGTGCACGATATGACAACCTGTTCACCACCCTTTTCCCTTACT
CTATGGGTATTCATCAGTCACCTACTACCAATGGTACTGATCCCGCGAAG
CATGATTATGCGCACTTTCACATGCACTTCTATCCGCCTCTGCTCCGAAG
TGCGACAGTTAGGAAATTCATGGTTGGCTTCGAGATGCTTGGCGAATCAC
AAAGAGATTTGACCGCAGAGCAAGCCGCGGCGAGACTGCGTGCCTGCTCT
GAAGTGCATTATAACCATGCCCGAAAGAAGGTTGAAGGCAATGGTGACGC
TTCTAAGTGA
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Coding sequence (CDS) from alignment at tig00000189_pilon:75227..76336-

>Ggra3347.t1 ID=Ggra3347.t1|Name=Ggra3347.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000189_pilon:75227..76336- (Gracilaria gracilis GNS1m male)
ATGTCTGCCAGCTTCGACTACACCGAGCACCCCCATCGTCGCTACAACCC
GCTCTCAGCGCGCTGGATTCTGTGCTCACCCCATCGCGCGAAGCGTCCGT
GGCAGGGCAGCGTTGAAGATCTGCCGCCTGATGAGCGTCCTGAGTACGAT
CCCAAGGACTACTTGGGGCCGGGAAACTTTCGTGTGAACGGCTCCGTGCA
GAACCCCAAGTACGATACCACTTTCGTGTTTGACAATGACTTCCAGGCTT
TGCTGGATAACACGCCGCACGGCGAAGTTGGCAGCGTAGAAGACAATGAT
CTGCTCGTCGCAAAAGCTGTGCGTGGAAAGTGTCGCGTCGTCTGCTTCTC
TCCGAAGCTCAATCTCACAGTCGCCGAGATGACAGTCGAAGAAATCAAAC
ATGTCGTCGATGCCTGGCTTGAGGAATATGACACCCTCTCCAAGTTGGAC
TATATCGGCCATGTGCAGATCTTCGAGAACAAGGGGCAGATGATGGGATG
CTCAAACCCACATCCTCACGGCCAAATCTGGGCTTCGGAGTTTGTACCGG
AGGAACCTCGCATTGTATTGGAGAACCTCAAGGCGTATCATGAAAAGAAG
GGTACCCATATGTTAGAAGACTATGTCAAGATCGAGATGGAAGCTAAGGA
ACGAATCGTCTGTGAAAATGACACCTTCCTTGCCGTCGTGCCCTTCTGGG
CAACCTGGCCATTTGAGGTGTTGGTTATGACCAAGAAACGCGTACCATGC
CTCAAGAACTTCAACGAAGCCATGAAGAGCGATCTCGCCGATATCTATCG
TCGTGTTTGTGCACGATATGACAACCTGTTCACCACCCTTTTCCCTTACT
CTATGGGTATTCATCAGTCACCTACTACCAATGGTACTGATCCCGCGAAG
CATGATTATGCGCACTTTCACATGCACTTCTATCCGCCTCTGCTCCGAAG
TGCGACAGTTAGGAAATTCATGGTTGGCTTCGAGATGCTTGGCGAATCAC
AAAGAGATTTGACCGCAGAGCAAGCCGCGGCGAGACTGCGTGCCTGCTCT
GAAGTGCATTATAACCATGCCCGAAAGAAGGTTGAAGGCAATGGTGACGC
TTCTAAGTGA
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