Ggra3345.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3345.t1
Unique NameGgra3345.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:72692..73834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708177.1
Preferred nameGPPS
PFAMspolyprenyl_synt
Max annot lvl2759|Eukaryota
KEGG rclassRC00279
KEGG koko:K05355,ko:K14066
KEGG ReactionR01658,R09245,R09246
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00366
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016740,GO:0016765,GO:0022414,GO:0032501,GO:0032502,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050347,GO:0051186,GO:0051188,GO:0061458,GO:0071704,GO:1901576,GO:1901661,GO:1901663
Evalue3.34e-105
EggNOG OGsCOG0142@1|root,KOG0776@2759|Eukaryota
EC2.5.1.1,2.5.1.82,2.5.1.83
Descriptionisoprenoid biosynthetic process
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3345Ggra3345Gracilaria gracilis GNS1m malegenetig00000189_pilon 72692..73834 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3345.t1.stop1Ggra3345.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 72692..72694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3345.t1.CDS1Ggra3345.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 72692..73834 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3345.t1.exon1Ggra3345.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 72692..73834 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3345.t1.start1Ggra3345.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 73832..73834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3345.t1Ggra3345.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 72692..73834 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3345.t1 ID=Ggra3345.t1|Name=Ggra3345.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp
MQVFRHVLRATPRFRYSRWLDLRTAASLSTARNQSGTWVPSLSRCIPDHS
SSVDPFRIVSSDLENMATSIRNTVSILQHPVLDAAAAHLLSLHGKRIRPI
IVLLIAHSAAPLVAAPGAIANQRSLAEITELIHAASLLHDDVIDVASTRR
GASSVNAAFGNQLAVLAGDFLLARASVALARLRDCDVVELLSTVIEHLVR
GEVIQMGNGSSTRNGEHELFEAYMAKTFFKTASLVANSCRAVTMLAGHSN
EVADAAFSYGKNVGIAFQLMDDLLDMTGTADKLGKPVLNDLQQGHATAPV
LYALQKFPELLPMIERRFTEEGDIDATLDLVQRADGLQKTRQLATDHVLL
AVDAIVQTFPPTDYRSALVNLANFVLTRER*
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spliced messenger RNA

>Ggra3345.t1 ID=Ggra3345.t1|Name=Ggra3345.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000189_pilon:72692..73834- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTTTTCCGGCATGTCCTCCGTGCTACTCCACGTTTCCGTTATTC
AAGATGGCTAGATCTGCGAACTGCGGCATCTCTGTCAACCGCCCGGAACC
AATCAGGCACATGGGTTCCGTCGTTGTCCAGATGCATTCCAGACCACTCT
TCCTCAGTAGATCCTTTTCGTATCGTATCCTCAGATCTGGAAAACATGGC
CACATCGATTCGAAACACCGTCTCAATTCTCCAGCACCCTGTGTTGGATG
CAGCTGCTGCGCACCTCCTCTCATTACATGGAAAGCGAATACGTCCGATC
ATAGTACTGCTCATCGCACATTCTGCAGCACCCCTTGTTGCAGCCCCTGG
AGCAATTGCCAACCAAAGAAGTCTGGCCGAGATCACTGAACTCATCCACG
CCGCGTCACTTCTTCACGACGATGTGATCGATGTAGCATCTACTCGACGT
GGGGCAAGTTCGGTTAACGCTGCGTTTGGGAATCAGCTGGCGGTTCTTGC
TGGAGACTTTCTTCTAGCCAGGGCATCTGTAGCTCTTGCGCGACTACGGG
ACTGTGATGTTGTTGAATTGCTCTCTACCGTCATTGAACATCTTGTCAGA
GGAGAAGTGATACAGATGGGTAATGGCTCATCTACAAGAAATGGCGAACA
CGAACTATTTGAAGCGTACATGGCAAAGACTTTTTTCAAGACAGCTTCTT
TGGTGGCCAATTCATGTCGTGCAGTGACAATGTTGGCCGGCCATTCGAAT
GAGGTTGCGGATGCCGCATTTAGTTACGGTAAGAACGTTGGTATAGCCTT
TCAACTTATGGATGATCTGTTAGACATGACCGGAACTGCGGACAAGCTAG
GAAAACCTGTTCTAAATGATTTGCAACAAGGTCATGCAACTGCACCAGTC
TTATATGCTTTACAGAAGTTCCCGGAGCTTCTTCCGATGATAGAGCGACG
TTTCACGGAAGAAGGTGATATTGATGCAACGCTAGACCTTGTGCAGAGAG
CAGATGGTCTCCAAAAGACCAGGCAACTCGCCACTGATCATGTCTTGCTC
GCAGTAGACGCAATAGTCCAAACCTTTCCTCCCACGGACTATCGAAGTGC
GCTTGTGAATCTTGCCAACTTTGTTCTGACAAGAGAACGATAG
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protein sequence of Ggra3345.t1

>Ggra3345.t1 ID=Ggra3345.t1|Name=Ggra3345.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MQVFRHVLRATPRFRYSRWLDLRTAASLSTARNQSGTWVPSLSRCIPDHS
SSVDPFRIVSSDLENMATSIRNTVSILQHPVLDAAAAHLLSLHGKRIRPI
IVLLIAHSAAPLVAAPGAIANQRSLAEITELIHAASLLHDDVIDVASTRR
GASSVNAAFGNQLAVLAGDFLLARASVALARLRDCDVVELLSTVIEHLVR
GEVIQMGNGSSTRNGEHELFEAYMAKTFFKTASLVANSCRAVTMLAGHSN
EVADAAFSYGKNVGIAFQLMDDLLDMTGTADKLGKPVLNDLQQGHATAPV
LYALQKFPELLPMIERRFTEEGDIDATLDLVQRADGLQKTRQLATDHVLL
AVDAIVQTFPPTDYRSALVNLANFVLTRER*
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mRNA from alignment at tig00000189_pilon:72692..73834-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3345.t1 ID=Ggra3345.t1|Name=Ggra3345.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000189_pilon:72692..73834- (Gracilaria gracilis GNS1m male)
ATGCAAGTTTTCCGGCATGTCCTCCGTGCTACTCCACGTTTCCGTTATTC
AAGATGGCTAGATCTGCGAACTGCGGCATCTCTGTCAACCGCCCGGAACC
AATCAGGCACATGGGTTCCGTCGTTGTCCAGATGCATTCCAGACCACTCT
TCCTCAGTAGATCCTTTTCGTATCGTATCCTCAGATCTGGAAAACATGGC
CACATCGATTCGAAACACCGTCTCAATTCTCCAGCACCCTGTGTTGGATG
CAGCTGCTGCGCACCTCCTCTCATTACATGGAAAGCGAATACGTCCGATC
ATAGTACTGCTCATCGCACATTCTGCAGCACCCCTTGTTGCAGCCCCTGG
AGCAATTGCCAACCAAAGAAGTCTGGCCGAGATCACTGAACTCATCCACG
CCGCGTCACTTCTTCACGACGATGTGATCGATGTAGCATCTACTCGACGT
GGGGCAAGTTCGGTTAACGCTGCGTTTGGGAATCAGCTGGCGGTTCTTGC
TGGAGACTTTCTTCTAGCCAGGGCATCTGTAGCTCTTGCGCGACTACGGG
ACTGTGATGTTGTTGAATTGCTCTCTACCGTCATTGAACATCTTGTCAGA
GGAGAAGTGATACAGATGGGTAATGGCTCATCTACAAGAAATGGCGAACA
CGAACTATTTGAAGCGTACATGGCAAAGACTTTTTTCAAGACAGCTTCTT
TGGTGGCCAATTCATGTCGTGCAGTGACAATGTTGGCCGGCCATTCGAAT
GAGGTTGCGGATGCCGCATTTAGTTACGGTAAGAACGTTGGTATAGCCTT
TCAACTTATGGATGATCTGTTAGACATGACCGGAACTGCGGACAAGCTAG
GAAAACCTGTTCTAAATGATTTGCAACAAGGTCATGCAACTGCACCAGTC
TTATATGCTTTACAGAAGTTCCCGGAGCTTCTTCCGATGATAGAGCGACG
TTTCACGGAAGAAGGTGATATTGATGCAACGCTAGACCTTGTGCAGAGAG
CAGATGGTCTCCAAAAGACCAGGCAACTCGCCACTGATCATGTCTTGCTC
GCAGTAGACGCAATAGTCCAAACCTTTCCTCCCACGGACTATCGAAGTGC
GCTTGTGAATCTTGCCAACTTTGTTCTGACAAGAGAACGATAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:72692..73834-

>Ggra3345.t1 ID=Ggra3345.t1|Name=Ggra3345.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000189_pilon:72692..73834- (Gracilaria gracilis GNS1m male)
ATGCAAGTTTTCCGGCATGTCCTCCGTGCTACTCCACGTTTCCGTTATTC
AAGATGGCTAGATCTGCGAACTGCGGCATCTCTGTCAACCGCCCGGAACC
AATCAGGCACATGGGTTCCGTCGTTGTCCAGATGCATTCCAGACCACTCT
TCCTCAGTAGATCCTTTTCGTATCGTATCCTCAGATCTGGAAAACATGGC
CACATCGATTCGAAACACCGTCTCAATTCTCCAGCACCCTGTGTTGGATG
CAGCTGCTGCGCACCTCCTCTCATTACATGGAAAGCGAATACGTCCGATC
ATAGTACTGCTCATCGCACATTCTGCAGCACCCCTTGTTGCAGCCCCTGG
AGCAATTGCCAACCAAAGAAGTCTGGCCGAGATCACTGAACTCATCCACG
CCGCGTCACTTCTTCACGACGATGTGATCGATGTAGCATCTACTCGACGT
GGGGCAAGTTCGGTTAACGCTGCGTTTGGGAATCAGCTGGCGGTTCTTGC
TGGAGACTTTCTTCTAGCCAGGGCATCTGTAGCTCTTGCGCGACTACGGG
ACTGTGATGTTGTTGAATTGCTCTCTACCGTCATTGAACATCTTGTCAGA
GGAGAAGTGATACAGATGGGTAATGGCTCATCTACAAGAAATGGCGAACA
CGAACTATTTGAAGCGTACATGGCAAAGACTTTTTTCAAGACAGCTTCTT
TGGTGGCCAATTCATGTCGTGCAGTGACAATGTTGGCCGGCCATTCGAAT
GAGGTTGCGGATGCCGCATTTAGTTACGGTAAGAACGTTGGTATAGCCTT
TCAACTTATGGATGATCTGTTAGACATGACCGGAACTGCGGACAAGCTAG
GAAAACCTGTTCTAAATGATTTGCAACAAGGTCATGCAACTGCACCAGTC
TTATATGCTTTACAGAAGTTCCCGGAGCTTCTTCCGATGATAGAGCGACG
TTTCACGGAAGAAGGTGATATTGATGCAACGCTAGACCTTGTGCAGAGAG
CAGATGGTCTCCAAAAGACCAGGCAACTCGCCACTGATCATGTCTTGCTC
GCAGTAGACGCAATAGTCCAAACCTTTCCTCCCACGGACTATCGAAGTGC
GCTTGTGAATCTTGCCAACTTTGTTCTGACAAGAGAACGATAG
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