Ggra3344.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3344.t1
Unique NameGgra3344.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length83
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:71895..72210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40148.OGLUM08G24800.1
PFAMsNdufs5
Max annot lvl35493|Streptophyta
KEGG koko:K03938
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009853,GO:0009987,GO:0010257,GO:0016020,GO:0016043,GO:0019866,GO:0022607,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0065003,GO:0070469,GO:0071840,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue6.66e-22
EggNOG OGs2CT4Y@1|root,2S4B1@2759|Eukaryota,37W3Q@33090|Viridiplantae,3GK1C@35493|Streptophyta,3M0Y7@4447|Liliopsida,3IRBF@38820|Poales
DescriptionNADH:ubiquinone oxidoreductase, NDUFS5-15kDa
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3344Ggra3344Gracilaria gracilis GNS1m malegenetig00000189_pilon 71895..72210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3344.t1Ggra3344.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 71895..72210 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3344.t1.start1Ggra3344.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 71895..71897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3344.t1.CDS1Ggra3344.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 71895..71970 +
Ggra3344.t1.CDS2Ggra3344.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000189_pilon 72038..72210 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3344.t1.exon1Ggra3344.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 71895..71970 +
Ggra3344.t1.exon2Ggra3344.t1.exon2Gracilaria gracilis GNS1m maleexontig00000189_pilon 72038..72210 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3344.t1.intron1Ggra3344.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000189_pilon 71971..72037 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3344.t1.stop1Ggra3344.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 72208..72210 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3344.t1 ID=Ggra3344.t1|Name=Ggra3344.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=83bp
MASGVGVNGGTGRCYPFWLEFTKCMADADLPMDCKAFRDDYVECLHHSKE
AKRRTAIAAELNRRRLQEIAEREAAAKQKPKS*
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spliced messenger RNA

>Ggra3344.t1 ID=Ggra3344.t1|Name=Ggra3344.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp|location=Sequence derived from alignment at tig00000189_pilon:71895..72210+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCCGGAGTCGGCGTTAACGGGGGAACCGGCCGTTGTTACCCTTT
CTGGCTCGAGTTCACCAAGTGCATGGCCGACGCCGATCTGCCCATGGATT
GCAAGGCGTTCCGTGACGACTACGTGGAATGCCTTCATCACAGTAAGGAG
GCCAAAAGAAGGACCGCAATTGCAGCTGAACTCAATCGCCGAAGACTGCA
AGAAATCGCCGAACGCGAGGCTGCCGCTAAGCAAAAGCCCAAATCATAG
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protein sequence of Ggra3344.t1

>Ggra3344.t1 ID=Ggra3344.t1|Name=Ggra3344.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=83bp
MASGVGVNGGTGRCYPFWLEFTKCMADADLPMDCKAFRDDYVECLHHSKE
AKRRTAIAAELNRRRLQEIAEREAAAKQKPKS*
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mRNA from alignment at tig00000189_pilon:71895..72210+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3344.t1 ID=Ggra3344.t1|Name=Ggra3344.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp|location=Sequence derived from alignment at tig00000189_pilon:71895..72210+ (Gracilaria gracilis GNS1m male)
ATGGCATCCGGAGTCGGCGTTAACGGGGGAACCGGCCGTTGTTACCCTTT
CTGGCTCGAGTTCACCAAGTGCATGGGTAAGTTTGATTCCTCTTCAGCAC
GAACGTCTTGCGACGCAGTTTAACTTTTTCTAACGTGACGCAGCCGACGC
CGATCTGCCCATGGATTGCAAGGCGTTCCGTGACGACTACGTGGAATGCC
TTCATCACAGTAAGGAGGCCAAAAGAAGGACCGCAATTGCAGCTGAACTC
AATCGCCGAAGACTGCAAGAAATCGCCGAACGCGAGGCTGCCGCTAAGCA
AAAGCCCAAATCATAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:71895..72210+

>Ggra3344.t1 ID=Ggra3344.t1|Name=Ggra3344.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=249bp|location=Sequence derived from alignment at tig00000189_pilon:71895..72210+ (Gracilaria gracilis GNS1m male)
ATGGCATCCGGAGTCGGCGTTAACGGGGGAACCGGCCGTTGTTACCCTTT
CTGGCTCGAGTTCACCAAGTGCATGGCCGACGCCGATCTGCCCATGGATT
GCAAGGCGTTCCGTGACGACTACGTGGAATGCCTTCATCACAGTAAGGAG
GCCAAAAGAAGGACCGCAATTGCAGCTGAACTCAATCGCCGAAGACTGCA
AGAAATCGCCGAACGCGAGGCTGCCGCTAAGCAAAAGCCCAAATCATAG
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