Ggra3342.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3342.t1
Unique NameGgra3342.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length75
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:64508..64917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3342Ggra3342Gracilaria gracilis GNS1m malegenetig00000189_pilon 64508..64917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3342.t1Ggra3342.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 64508..64917 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3342.t1.stop1Ggra3342.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 64508..64510 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3342.t1.CDS1Ggra3342.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 64508..64592 -
Ggra3342.t1.CDS2Ggra3342.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000189_pilon 64696..64734 -
Ggra3342.t1.CDS3Ggra3342.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000189_pilon 64817..64917 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3342.t1.exon1Ggra3342.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 64508..64592 -
Ggra3342.t1.exon2Ggra3342.t1.exon2Gracilaria gracilis GNS1m maleexontig00000189_pilon 64696..64734 -
Ggra3342.t1.exon3Ggra3342.t1.exon3Gracilaria gracilis GNS1m maleexontig00000189_pilon 64817..64917 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3342.t1.intron1Ggra3342.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000189_pilon 64593..64695 -
Ggra3342.t1.intron2Ggra3342.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000189_pilon 64735..64816 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3342.t1.start1Ggra3342.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 64915..64917 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3342.t1 ID=Ggra3342.t1|Name=Ggra3342.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=75bp
MGALLTGTVIFLVLGFISYFIVSAIYRNDKDAQALGQLSVVLATVCISCL
NIFVVTHSISFDLFCTTVSESDAQ*
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spliced messenger RNA

>Ggra3342.t1 ID=Ggra3342.t1|Name=Ggra3342.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=225bp|location=Sequence derived from alignment at tig00000189_pilon:64508..64917- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCGTTGTTAACCGGAACCGTCATCTTTCTCGTACTGGGCTTCAT
TTCCTATTTCATAGTATCGGCCATCTACCGAAACGACAAGGATGCCCAAG
CTCTTGGTCAACTAAGCGTCGTTCTCGCCACCGTTTGCATATCGTGCCTA
AACATCTTTGTTGTCACCCATTCCATTTCGTTCGACCTTTTTTGCACTAC
TGTTTCCGAGTCTGATGCGCAATAG
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protein sequence of Ggra3342.t1

>Ggra3342.t1 ID=Ggra3342.t1|Name=Ggra3342.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=75bp
MGALLTGTVIFLVLGFISYFIVSAIYRNDKDAQALGQLSVVLATVCISCL
NIFVVTHSISFDLFCTTVSESDAQ*
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mRNA from alignment at tig00000189_pilon:64508..64917-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3342.t1 ID=Ggra3342.t1|Name=Ggra3342.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=410bp|location=Sequence derived from alignment at tig00000189_pilon:64508..64917- (Gracilaria gracilis GNS1m male)
ATGGGAGCGTTGTTAACCGGAACCGTCATCTTTCTCGTACTGGGCTTCAT
TTCCTATTTCATAGTATCGGCCATCTACCGAAACGACAAGGATGCCCAAG
CGTAAGTTCAGCTGCATTCAGTTACAATGCCCCCTCATCGTCAGCATACT
AACGCACCCATACCCACATTCATCCGTCATTAGTCTTGGTCAACTAAGCG
TCGTTCTCGCCACCGTTTGCATGTATATCATGTGGGCTACGTGCTACCTC
CATCAACTTCACCCACTCGTACGACCCATAAAGGGAATGCATTAACAATA
CCCCTCACCTTTAGCCTAACTACAGATCGTGCCTAAACATCTTTGTTGTC
ACCCATTCCATTTCGTTCGACCTTTTTTGCACTACTGTTTCCGAGTCTGA
TGCGCAATAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:64508..64917-

>Ggra3342.t1 ID=Ggra3342.t1|Name=Ggra3342.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=225bp|location=Sequence derived from alignment at tig00000189_pilon:64508..64917- (Gracilaria gracilis GNS1m male)
ATGGGAGCGTTGTTAACCGGAACCGTCATCTTTCTCGTACTGGGCTTCAT
TTCCTATTTCATAGTATCGGCCATCTACCGAAACGACAAGGATGCCCAAG
CTCTTGGTCAACTAAGCGTCGTTCTCGCCACCGTTTGCATATCGTGCCTA
AACATCTTTGTTGTCACCCATTCCATTTCGTTCGACCTTTTTTGCACTAC
TGTTTCCGAGTCTGATGCGCAATAG
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