Ggra3341.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3341.t1
Unique Name	Ggra3341.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	671

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000189_pilon	contig	tig00000189_pilon:62278..64290 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_02587T0
Preferred name	SWD1
PFAMs	WD40
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14961
KEGG Pathway	ko04934,map04934
GOs	GO:0000228,GO:0000723,GO:0000785,GO:0000790,GO:0000922,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015630,GO:0016043,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0018022,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032200,GO:0032259,GO:0032991,GO:0034401,GO:0034641,GO:0034708,GO:0034968,GO:0035097,GO:0036211,GO:0040029,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048188,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051568,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097549,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue	1.61e-56
EggNOG OGs	KOG1273@1\|root,KOG1273@2759\|Eukaryota,38EVN@33154\|Opisthokonta,3NUJP@4751\|Fungi,1GTEH@112252\|Fungi incertae sedis
Description	set1 complex component swd1
COG category	S
BRITE	ko00000,ko00001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3341	Ggra3341	Gracilaria gracilis GNS1m male	gene	tig00000189_pilon 62278..64290 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3341.t1.start1	Ggra3341.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000189_pilon 62278..62280 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3341.t1.CDS1	Ggra3341.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000189_pilon 62278..64290 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3341.t1.exon1	Ggra3341.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000189_pilon 62278..64290 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3341.t1.stop1	Ggra3341.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000189_pilon 64288..64290 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3341.t1	Ggra3341.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000189_pilon 62278..64290 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000189_pilon:62278..64290+
coding sequence from alignment at tig00000189_pilon:62278..64290+

mRNA sequence

>Ggra3341.t1 ID=Ggra3341.t1|Name=Ggra3341.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=671bp
MNRALLNPFEAADLPRGIEEVLEQDSGTCMRFNRHGNILAVGTKTGQVIL
WDFDTLSIACVLGDSNTRFPAVTSLSFPAPRNGSMVLAAHANGVVRLYDT
LSRSVASEITFEIPIVQVVSHPKKCDIAVVVPKNSHPLVLHIRRGVYEAK
TEQFETVQDPGQFIYFKASVLQGEVLGTSVPHKMPTRPPNAFGNHKMSTV
PNKEGFIACSVLCTSDEYDQGVSVESSGTKRKSPFYVTFTRGGDSVLRGG
QTGLVRTFKLEQSGDQSLPTAKCVSAVIVPGKASIRSIQFSRKGNTVLIN
SQDRIMRLFFVEQVIERQQEDLAKPPTMVLNSTFAELVNKAQCHSACFSR
DGDFVLGAMEGADHRIHVWRAADGFLDLTLEGPRDDIVQILWHPMRPVFT
SLSASGTVYVWMKNFTENWSAFAAEFNELEANEEYVEAEDEFDLKDPEDE
EKRIEQREKEEAEDVNVDVCNKLGWFSSDSDEEDTYFYVPAVPEESSTIG
YELVSERIISEKIRQESQRLGENHGTARRTEVGKGIDITDNRRKRKVELQ
NASKTPRPKRSCNGGKRRGRESRNDRNGQKSNLTPVSNGGSLPATEASIP
LEIIPASGEGVVAFAVDANSRDVEDNRGREVVIVNGDEDEGVTRVTEAGD
VVDEVILDQGAVIDDQDSDD*

spliced messenger RNA

>Ggra3341.t1 ID=Ggra3341.t1|Name=Ggra3341.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2013bp|location=Sequence derived from alignment at tig00000189_pilon:62278..64290+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGTGCTTTGCTTAATCCTTTTGAAGCCGCCGACCTTCCTCGTGG
CATAGAGGAAGTTTTGGAACAGGATTCTGGTACTTGCATGCGATTCAACC
GCCATGGTAATATCCTCGCAGTTGGTACTAAAACCGGTCAAGTCATTTTA
TGGGACTTTGACACACTGTCCATCGCTTGCGTTTTGGGAGACAGCAATAC
CCGATTTCCCGCCGTGACTTCCTTGTCATTTCCTGCACCAAGAAATGGTT
CCATGGTGTTGGCTGCCCACGCAAATGGTGTTGTTCGGTTGTATGATACA
CTCTCTCGATCGGTAGCGTCGGAAATTACTTTCGAGATACCAATTGTTCA
GGTCGTCTCCCATCCTAAGAAGTGTGATATAGCTGTCGTGGTACCCAAAA
ACTCCCACCCACTTGTTTTACATATAAGAAGAGGGGTGTATGAAGCAAAG
ACCGAACAGTTTGAAACAGTACAAGATCCAGGCCAGTTCATATATTTCAA
AGCATCGGTGCTGCAAGGCGAAGTACTGGGAACTTCTGTACCTCACAAGA
TGCCCACTCGTCCTCCTAACGCCTTTGGAAATCATAAAATGTCAACCGTT
CCTAACAAGGAAGGCTTCATTGCTTGTTCTGTTCTCTGTACTTCTGATGA
GTATGACCAAGGAGTATCTGTGGAGAGTAGCGGAACGAAGCGCAAGAGCC
CTTTTTATGTCACGTTCACTCGAGGAGGTGATTCCGTACTGAGGGGAGGA
CAGACCGGGCTCGTGAGAACATTCAAGTTGGAACAGTCTGGGGACCAGTC
CCTTCCCACTGCAAAATGCGTCTCTGCTGTTATTGTTCCGGGAAAGGCAT
CTATTCGTTCAATACAGTTCTCTCGTAAGGGAAACACCGTACTCATTAAC
TCACAAGATCGCATCATGCGATTGTTTTTCGTTGAGCAAGTCATCGAAAG
ACAACAAGAAGATTTGGCAAAGCCCCCTACAATGGTTCTGAACAGCACCT
TTGCCGAACTTGTGAACAAAGCTCAATGTCACAGCGCCTGTTTTTCACGT
GATGGGGATTTTGTGTTGGGGGCAATGGAAGGTGCAGATCATCGTATTCA
TGTATGGAGAGCTGCTGATGGTTTTCTTGATCTTACGTTGGAGGGGCCGC
GCGACGATATTGTACAGATTTTATGGCATCCTATGCGTCCCGTGTTCACC
TCCCTTTCAGCAAGCGGAACTGTGTATGTATGGATGAAGAATTTTACTGA
GAACTGGAGCGCCTTCGCGGCAGAATTCAACGAATTGGAAGCAAACGAAG
AGTACGTCGAAGCGGAGGATGAGTTTGATCTAAAGGATCCTGAAGACGAG
GAGAAACGCATAGAGCAACGAGAGAAGGAAGAAGCAGAAGATGTAAACGT
TGACGTTTGTAACAAACTGGGCTGGTTTTCATCCGACTCGGACGAAGAAG
ATACTTACTTCTACGTCCCAGCAGTGCCAGAGGAGTCTTCTACTATTGGG
TATGAGTTGGTGTCTGAGCGAATCATTTCGGAAAAGATCCGGCAAGAAAG
CCAAAGACTTGGAGAGAACCACGGAACGGCGAGACGAACAGAGGTGGGCA
AGGGTATAGATATCACTGATAACCGTCGAAAACGAAAAGTAGAACTACAA
AACGCTTCTAAAACACCAAGACCAAAACGGTCATGCAACGGTGGGAAAAG
AAGAGGCCGTGAGTCAAGGAATGATCGAAATGGGCAGAAGAGCAATCTCA
CGCCAGTTTCAAATGGGGGGTCATTGCCTGCAACGGAAGCTAGTATCCCA
CTGGAAATTATACCCGCCAGTGGTGAGGGAGTTGTGGCGTTTGCAGTTGA
TGCGAACTCTAGGGATGTAGAAGACAATCGCGGCAGGGAGGTTGTGATTG
TTAATGGGGATGAAGATGAGGGTGTAACGAGGGTAACGGAAGCGGGAGAC
GTTGTTGATGAGGTCATACTTGATCAAGGAGCTGTTATAGATGATCAAGA
TTCGGACGATTAA

protein sequence of Ggra3341.t1

>Ggra3341.t1 ID=Ggra3341.t1|Name=Ggra3341.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=671bp
MNRALLNPFEAADLPRGIEEVLEQDSGTCMRFNRHGNILAVGTKTGQVIL
WDFDTLSIACVLGDSNTRFPAVTSLSFPAPRNGSMVLAAHANGVVRLYDT
LSRSVASEITFEIPIVQVVSHPKKCDIAVVVPKNSHPLVLHIRRGVYEAK
TEQFETVQDPGQFIYFKASVLQGEVLGTSVPHKMPTRPPNAFGNHKMSTV
PNKEGFIACSVLCTSDEYDQGVSVESSGTKRKSPFYVTFTRGGDSVLRGG
QTGLVRTFKLEQSGDQSLPTAKCVSAVIVPGKASIRSIQFSRKGNTVLIN
SQDRIMRLFFVEQVIERQQEDLAKPPTMVLNSTFAELVNKAQCHSACFSR
DGDFVLGAMEGADHRIHVWRAADGFLDLTLEGPRDDIVQILWHPMRPVFT
SLSASGTVYVWMKNFTENWSAFAAEFNELEANEEYVEAEDEFDLKDPEDE
EKRIEQREKEEAEDVNVDVCNKLGWFSSDSDEEDTYFYVPAVPEESSTIG
YELVSERIISEKIRQESQRLGENHGTARRTEVGKGIDITDNRRKRKVELQ
NASKTPRPKRSCNGGKRRGRESRNDRNGQKSNLTPVSNGGSLPATEASIP
LEIIPASGEGVVAFAVDANSRDVEDNRGREVVIVNGDEDEGVTRVTEAGD
VVDEVILDQGAVIDDQDSDD*

mRNA from alignment at tig00000189_pilon:62278..64290+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3341.t1 ID=Ggra3341.t1|Name=Ggra3341.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2013bp|location=Sequence derived from alignment at tig00000189_pilon:62278..64290+ (Gracilaria gracilis GNS1m male)
ATGAACCGTGCTTTGCTTAATCCTTTTGAAGCCGCCGACCTTCCTCGTGG
CATAGAGGAAGTTTTGGAACAGGATTCTGGTACTTGCATGCGATTCAACC
GCCATGGTAATATCCTCGCAGTTGGTACTAAAACCGGTCAAGTCATTTTA
TGGGACTTTGACACACTGTCCATCGCTTGCGTTTTGGGAGACAGCAATAC
CCGATTTCCCGCCGTGACTTCCTTGTCATTTCCTGCACCAAGAAATGGTT
CCATGGTGTTGGCTGCCCACGCAAATGGTGTTGTTCGGTTGTATGATACA
CTCTCTCGATCGGTAGCGTCGGAAATTACTTTCGAGATACCAATTGTTCA
GGTCGTCTCCCATCCTAAGAAGTGTGATATAGCTGTCGTGGTACCCAAAA
ACTCCCACCCACTTGTTTTACATATAAGAAGAGGGGTGTATGAAGCAAAG
ACCGAACAGTTTGAAACAGTACAAGATCCAGGCCAGTTCATATATTTCAA
AGCATCGGTGCTGCAAGGCGAAGTACTGGGAACTTCTGTACCTCACAAGA
TGCCCACTCGTCCTCCTAACGCCTTTGGAAATCATAAAATGTCAACCGTT
CCTAACAAGGAAGGCTTCATTGCTTGTTCTGTTCTCTGTACTTCTGATGA
GTATGACCAAGGAGTATCTGTGGAGAGTAGCGGAACGAAGCGCAAGAGCC
CTTTTTATGTCACGTTCACTCGAGGAGGTGATTCCGTACTGAGGGGAGGA
CAGACCGGGCTCGTGAGAACATTCAAGTTGGAACAGTCTGGGGACCAGTC
CCTTCCCACTGCAAAATGCGTCTCTGCTGTTATTGTTCCGGGAAAGGCAT
CTATTCGTTCAATACAGTTCTCTCGTAAGGGAAACACCGTACTCATTAAC
TCACAAGATCGCATCATGCGATTGTTTTTCGTTGAGCAAGTCATCGAAAG
ACAACAAGAAGATTTGGCAAAGCCCCCTACAATGGTTCTGAACAGCACCT
TTGCCGAACTTGTGAACAAAGCTCAATGTCACAGCGCCTGTTTTTCACGT
GATGGGGATTTTGTGTTGGGGGCAATGGAAGGTGCAGATCATCGTATTCA
TGTATGGAGAGCTGCTGATGGTTTTCTTGATCTTACGTTGGAGGGGCCGC
GCGACGATATTGTACAGATTTTATGGCATCCTATGCGTCCCGTGTTCACC
TCCCTTTCAGCAAGCGGAACTGTGTATGTATGGATGAAGAATTTTACTGA
GAACTGGAGCGCCTTCGCGGCAGAATTCAACGAATTGGAAGCAAACGAAG
AGTACGTCGAAGCGGAGGATGAGTTTGATCTAAAGGATCCTGAAGACGAG
GAGAAACGCATAGAGCAACGAGAGAAGGAAGAAGCAGAAGATGTAAACGT
TGACGTTTGTAACAAACTGGGCTGGTTTTCATCCGACTCGGACGAAGAAG
ATACTTACTTCTACGTCCCAGCAGTGCCAGAGGAGTCTTCTACTATTGGG
TATGAGTTGGTGTCTGAGCGAATCATTTCGGAAAAGATCCGGCAAGAAAG
CCAAAGACTTGGAGAGAACCACGGAACGGCGAGACGAACAGAGGTGGGCA
AGGGTATAGATATCACTGATAACCGTCGAAAACGAAAAGTAGAACTACAA
AACGCTTCTAAAACACCAAGACCAAAACGGTCATGCAACGGTGGGAAAAG
AAGAGGCCGTGAGTCAAGGAATGATCGAAATGGGCAGAAGAGCAATCTCA
CGCCAGTTTCAAATGGGGGGTCATTGCCTGCAACGGAAGCTAGTATCCCA
CTGGAAATTATACCCGCCAGTGGTGAGGGAGTTGTGGCGTTTGCAGTTGA
TGCGAACTCTAGGGATGTAGAAGACAATCGCGGCAGGGAGGTTGTGATTG
TTAATGGGGATGAAGATGAGGGTGTAACGAGGGTAACGGAAGCGGGAGAC
GTTGTTGATGAGGTCATACTTGATCAAGGAGCTGTTATAGATGATCAAGA
TTCGGACGATTAA

Coding sequence (CDS) from alignment at tig00000189_pilon:62278..64290+

>Ggra3341.t1 ID=Ggra3341.t1|Name=Ggra3341.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2013bp|location=Sequence derived from alignment at tig00000189_pilon:62278..64290+ (Gracilaria gracilis GNS1m male)
ATGAACCGTGCTTTGCTTAATCCTTTTGAAGCCGCCGACCTTCCTCGTGG
CATAGAGGAAGTTTTGGAACAGGATTCTGGTACTTGCATGCGATTCAACC
GCCATGGTAATATCCTCGCAGTTGGTACTAAAACCGGTCAAGTCATTTTA
TGGGACTTTGACACACTGTCCATCGCTTGCGTTTTGGGAGACAGCAATAC
CCGATTTCCCGCCGTGACTTCCTTGTCATTTCCTGCACCAAGAAATGGTT
CCATGGTGTTGGCTGCCCACGCAAATGGTGTTGTTCGGTTGTATGATACA
CTCTCTCGATCGGTAGCGTCGGAAATTACTTTCGAGATACCAATTGTTCA
GGTCGTCTCCCATCCTAAGAAGTGTGATATAGCTGTCGTGGTACCCAAAA
ACTCCCACCCACTTGTTTTACATATAAGAAGAGGGGTGTATGAAGCAAAG
ACCGAACAGTTTGAAACAGTACAAGATCCAGGCCAGTTCATATATTTCAA
AGCATCGGTGCTGCAAGGCGAAGTACTGGGAACTTCTGTACCTCACAAGA
TGCCCACTCGTCCTCCTAACGCCTTTGGAAATCATAAAATGTCAACCGTT
CCTAACAAGGAAGGCTTCATTGCTTGTTCTGTTCTCTGTACTTCTGATGA
GTATGACCAAGGAGTATCTGTGGAGAGTAGCGGAACGAAGCGCAAGAGCC
CTTTTTATGTCACGTTCACTCGAGGAGGTGATTCCGTACTGAGGGGAGGA
CAGACCGGGCTCGTGAGAACATTCAAGTTGGAACAGTCTGGGGACCAGTC
CCTTCCCACTGCAAAATGCGTCTCTGCTGTTATTGTTCCGGGAAAGGCAT
CTATTCGTTCAATACAGTTCTCTCGTAAGGGAAACACCGTACTCATTAAC
TCACAAGATCGCATCATGCGATTGTTTTTCGTTGAGCAAGTCATCGAAAG
ACAACAAGAAGATTTGGCAAAGCCCCCTACAATGGTTCTGAACAGCACCT
TTGCCGAACTTGTGAACAAAGCTCAATGTCACAGCGCCTGTTTTTCACGT
GATGGGGATTTTGTGTTGGGGGCAATGGAAGGTGCAGATCATCGTATTCA
TGTATGGAGAGCTGCTGATGGTTTTCTTGATCTTACGTTGGAGGGGCCGC
GCGACGATATTGTACAGATTTTATGGCATCCTATGCGTCCCGTGTTCACC
TCCCTTTCAGCAAGCGGAACTGTGTATGTATGGATGAAGAATTTTACTGA
GAACTGGAGCGCCTTCGCGGCAGAATTCAACGAATTGGAAGCAAACGAAG
AGTACGTCGAAGCGGAGGATGAGTTTGATCTAAAGGATCCTGAAGACGAG
GAGAAACGCATAGAGCAACGAGAGAAGGAAGAAGCAGAAGATGTAAACGT
TGACGTTTGTAACAAACTGGGCTGGTTTTCATCCGACTCGGACGAAGAAG
ATACTTACTTCTACGTCCCAGCAGTGCCAGAGGAGTCTTCTACTATTGGG
TATGAGTTGGTGTCTGAGCGAATCATTTCGGAAAAGATCCGGCAAGAAAG
CCAAAGACTTGGAGAGAACCACGGAACGGCGAGACGAACAGAGGTGGGCA
AGGGTATAGATATCACTGATAACCGTCGAAAACGAAAAGTAGAACTACAA
AACGCTTCTAAAACACCAAGACCAAAACGGTCATGCAACGGTGGGAAAAG
AAGAGGCCGTGAGTCAAGGAATGATCGAAATGGGCAGAAGAGCAATCTCA
CGCCAGTTTCAAATGGGGGGTCATTGCCTGCAACGGAAGCTAGTATCCCA
CTGGAAATTATACCCGCCAGTGGTGAGGGAGTTGTGGCGTTTGCAGTTGA
TGCGAACTCTAGGGATGTAGAAGACAATCGCGGCAGGGAGGTTGTGATTG
TTAATGGGGATGAAGATGAGGGTGTAACGAGGGTAACGGAAGCGGGAGAC
GTTGTTGATGAGGTCATACTTGATCAAGGAGCTGTTATAGATGATCAAGA
TTCGGACGATTAA