Ggra3340.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3340.t1
Unique NameGgra3340.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:59912..61033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3340Ggra3340Gracilaria gracilis GNS1m malegenetig00000189_pilon 59912..61033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3340.t1Ggra3340.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 59912..61033 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3340.t1.start1Ggra3340.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 59912..59914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3340.t1.CDS1Ggra3340.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 59912..60458 +
Ggra3340.t1.CDS2Ggra3340.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000189_pilon 60654..61033 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3340.t1.exon1Ggra3340.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 59912..60458 +
Ggra3340.t1.exon2Ggra3340.t1.exon2Gracilaria gracilis GNS1m maleexontig00000189_pilon 60654..61033 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3340.t1.intron1Ggra3340.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000189_pilon 60459..60653 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3340.t1.stop1Ggra3340.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 61031..61033 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3340.t1 ID=Ggra3340.t1|Name=Ggra3340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MKLHIPFLIIFLFSPVFRKDGDANAALDTVSFDDHANCPCQCRIEQGVLR
QVYTECQMYSYEKCKVSFCLKEDRPGFSCCDEDMSGSALGEINVALEGAQ
STNEAYLFDEYDLSESAETYLADEYNSSESGKSDLDDEVHASESPLLEPS
YDNVQQHNENVFSSEEPCHHKKVSPTVSVSATDWKLFETVSFPLKRNDVV
AILAQDNGGWYGLIAALYVGDRWYLTGRDEWKAIKAFEFPGDDELWTVPF
FNTCSWDLVEARPNADVIFNGKAPNFPYETGAQYVWADDAGENDGIFVRF
VLGGEDCS*
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spliced messenger RNA

>Ggra3340.t1 ID=Ggra3340.t1|Name=Ggra3340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000189_pilon:59912..61033+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGCACATCCCCTTCCTTATAATCTTTCTGTTCAGCCCAGTCTT
TCGGAAGGATGGAGATGCTAATGCGGCACTTGATACAGTTTCGTTCGATG
ATCACGCAAATTGTCCATGTCAATGTCGAATAGAACAGGGCGTCTTGAGG
CAAGTGTATACGGAATGTCAGATGTATTCGTACGAGAAGTGCAAGGTCTC
TTTTTGCCTCAAAGAGGACAGACCAGGATTCTCGTGTTGTGACGAAGATA
TGTCAGGGAGCGCTCTTGGTGAAATTAATGTAGCGCTTGAAGGAGCACAA
TCTACCAATGAAGCGTACTTGTTTGACGAATACGATCTTTCTGAGTCAGC
TGAAACATACCTGGCTGACGAGTATAATAGCTCTGAGTCGGGTAAATCAG
ACCTCGACGATGAAGTTCATGCTTCCGAATCACCTCTTCTGGAACCGAGT
TACGACAATGTACAACAACACAATGAGAATGTATTCTCTTCTGAGGAGCC
TTGCCATCACAAAAAAGTGTCGCCAACAGTTTCTGTGAGTgctacggATT
GGAAGCTGTTTGAAACGGTTTCATTTCCCTTGAAGCGGAACGACGTGGTT
GCAATTCTTGCCCAAGACAATGGAGGATGGTATGGCTTAATTGCGGCGTT
GTATGTGGGAGACCGGTGGTATCTCACTGGCAGGGATGAATGGAAAGCAA
TCAAAGCCTTTGAGTTCCCTGGGGATGATGAGTTGTGGACGGTTCCTTTC
TTCAACACTTGCAGTTGGGATCTTGTTGAGGCAAGACCTAACGCGGATGT
GATCTTCAATGGGAAAGCGCCCAACTTTCCGTATGAAACGGGCGCTCAGT
ACGTTTGGGCTGATGATGCAGGAGAGAATGATGGCATTTTTGTAAGGTTT
GTGCTGGGAGGCGAAGACTGTTCTTGA
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protein sequence of Ggra3340.t1

>Ggra3340.t1 ID=Ggra3340.t1|Name=Ggra3340.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MKLHIPFLIIFLFSPVFRKDGDANAALDTVSFDDHANCPCQCRIEQGVLR
QVYTECQMYSYEKCKVSFCLKEDRPGFSCCDEDMSGSALGEINVALEGAQ
STNEAYLFDEYDLSESAETYLADEYNSSESGKSDLDDEVHASESPLLEPS
YDNVQQHNENVFSSEEPCHHKKVSPTVSVSATDWKLFETVSFPLKRNDVV
AILAQDNGGWYGLIAALYVGDRWYLTGRDEWKAIKAFEFPGDDELWTVPF
FNTCSWDLVEARPNADVIFNGKAPNFPYETGAQYVWADDAGENDGIFVRF
VLGGEDCS*
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mRNA from alignment at tig00000189_pilon:59912..61033+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3340.t1 ID=Ggra3340.t1|Name=Ggra3340.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000189_pilon:59912..61033+ (Gracilaria gracilis GNS1m male)
ATGAAGCTGCACATCCCCTTCCTTATAATCTTTCTGTTCAGCCCAGTCTT
TCGGAAGGATGGAGATGCTAATGCGGCACTTGATACAGTTTCGTTCGATG
ATCACGCAAATTGTCCATGTCAATGTCGAATAGAACAGGGCGTCTTGAGG
CAAGTGTATACGGAATGTCAGATGTATTCGTACGAGAAGTGCAAGGTCTC
TTTTTGCCTCAAAGAGGACAGACCAGGATTCTCGTGTTGTGACGAAGATA
TGTCAGGGAGCGCTCTTGGTGAAATTAATGTAGCGCTTGAAGGAGCACAA
TCTACCAATGAAGCGTACTTGTTTGACGAATACGATCTTTCTGAGTCAGC
TGAAACATACCTGGCTGACGAGTATAATAGCTCTGAGTCGGGTAAATCAG
ACCTCGACGATGAAGTTCATGCTTCCGAATCACCTCTTCTGGAACCGAGT
TACGACAATGTACAACAACACAATGAGAATGTATTCTCTTCTGAGGAGCC
TTGCCATCACAAAAAAGTGTCGCCAACAGTTTCTGTGAGTgctacgggta
caccaagtccaacggctacggcttcggtcacggcAAGCGCCACGccaaca
cgcacaccaagtacatcaccatcaccaacgataacgccatctgtgtcacc
gtcgccatccccCAAGTTTGCAACACTTCATTATGCCGCTGACAACGAAG
CTTATGTGTATGTCAATGGCGTTCTGATTTCCGCTCTTACAGATTGGAAG
CTGTTTGAAACGGTTTCATTTCCCTTGAAGCGGAACGACGTGGTTGCAAT
TCTTGCCCAAGACAATGGAGGATGGTATGGCTTAATTGCGGCGTTGTATG
TGGGAGACCGGTGGTATCTCACTGGCAGGGATGAATGGAAAGCAATCAAA
GCCTTTGAGTTCCCTGGGGATGATGAGTTGTGGACGGTTCCTTTCTTCAA
CACTTGCAGTTGGGATCTTGTTGAGGCAAGACCTAACGCGGATGTGATCT
TCAATGGGAAAGCGCCCAACTTTCCGTATGAAACGGGCGCTCAGTACGTT
TGGGCTGATGATGCAGGAGAGAATGATGGCATTTTTGTAAGGTTTGTGCT
GGGAGGCGAAGACTGTTCTTGA
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Coding sequence (CDS) from alignment at tig00000189_pilon:59912..61033+

>Ggra3340.t1 ID=Ggra3340.t1|Name=Ggra3340.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000189_pilon:59912..61033+ (Gracilaria gracilis GNS1m male)
ATGAAGCTGCACATCCCCTTCCTTATAATCTTTCTGTTCAGCCCAGTCTT
TCGGAAGGATGGAGATGCTAATGCGGCACTTGATACAGTTTCGTTCGATG
ATCACGCAAATTGTCCATGTCAATGTCGAATAGAACAGGGCGTCTTGAGG
CAAGTGTATACGGAATGTCAGATGTATTCGTACGAGAAGTGCAAGGTCTC
TTTTTGCCTCAAAGAGGACAGACCAGGATTCTCGTGTTGTGACGAAGATA
TGTCAGGGAGCGCTCTTGGTGAAATTAATGTAGCGCTTGAAGGAGCACAA
TCTACCAATGAAGCGTACTTGTTTGACGAATACGATCTTTCTGAGTCAGC
TGAAACATACCTGGCTGACGAGTATAATAGCTCTGAGTCGGGTAAATCAG
ACCTCGACGATGAAGTTCATGCTTCCGAATCACCTCTTCTGGAACCGAGT
TACGACAATGTACAACAACACAATGAGAATGTATTCTCTTCTGAGGAGCC
TTGCCATCACAAAAAAGTGTCGCCAACAGTTTCTGTGAGTgctacggATT
GGAAGCTGTTTGAAACGGTTTCATTTCCCTTGAAGCGGAACGACGTGGTT
GCAATTCTTGCCCAAGACAATGGAGGATGGTATGGCTTAATTGCGGCGTT
GTATGTGGGAGACCGGTGGTATCTCACTGGCAGGGATGAATGGAAAGCAA
TCAAAGCCTTTGAGTTCCCTGGGGATGATGAGTTGTGGACGGTTCCTTTC
TTCAACACTTGCAGTTGGGATCTTGTTGAGGCAAGACCTAACGCGGATGT
GATCTTCAATGGGAAAGCGCCCAACTTTCCGTATGAAACGGGCGCTCAGT
ACGTTTGGGCTGATGATGCAGGAGAGAATGATGGCATTTTTGTAAGGTTT
GTGCTGGGAGGCGAAGACTGTTCTTGA
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