Ggra3339.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3339.t1
Unique NameGgra3339.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:57152..58018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog749414.SBI_07764
PFAMsDUF1963
Max annot lvl201174|Actinobacteria
Evalue9.61e-44
EggNOG OGsCOG3878@1|root,COG3878@2|Bacteria,2GNAB@201174|Actinobacteria
DescriptionProtein conserved in bacteria
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3339Ggra3339Gracilaria gracilis GNS1m malegenetig00000189_pilon 57152..58018 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3339.t1.stop1Ggra3339.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 57152..57154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3339.t1.CDS1Ggra3339.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 57152..58018 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3339.t1.exon1Ggra3339.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 57152..58018 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3339.t1.start1Ggra3339.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 58016..58018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3339.t1Ggra3339.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 57152..58018 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3339.t1 ID=Ggra3339.t1|Name=Ggra3339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MPKTYTPTFDLSTHFPQLPKKLAVFLHPRKTTHALSTLSSKMGGHFYWPV
NEPWPTCPVDGHNMTAILQIYRDDVAELGFPAGKNLFQLLWCPEQDHEQA
DHGFYPFCKWRYVGEDDSTRLLPLNDVPPPAEGTYGFSIPKPCGLHPERV
EEYPSYDEAEMISSTLPEQVENWIADNGRADLNHLGISGDDNSYQYCWGA
APNTKVGGYIAWSNAYDTCKCNDCGAVMDHLLSISSGDYGGDSTRWFPID
ESRQEARDGHDLCIGDGEVYVLFICRKCEHWPIKNLIA*
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spliced messenger RNA

>Ggra3339.t1 ID=Ggra3339.t1|Name=Ggra3339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000189_pilon:57152..58018- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAAAACCTATACCCCAACTTTCGATCTGTCAACGCACTTCCCGCA
ACTCCCCAAGAAGCTCGCCGTGTTCCTTCATCCTCGAAAGACCACTCATG
CGCTCTCCACACTATCCTCCAAGATGGGCGGTCATTTCTACTGGCCAGTG
AACGAACCGTGGCCCACTTGTCCGGTTGATGGCCATAATATGACAGCTAT
TTTGCAGATATACCGTGATGACGTTGCTGAACTTGGGTTCCCTGCTGGCA
AGAACCTGTTCCAATTGTTGTGGTGTCCGGAACAAGACCATGAGCAGGCA
GACCATGGCTTCTATCCGTTTTGCAAATGGCGATATGTTGGTGAAGATGA
TTCGACGAGGTTGCTTCCGTTGAATGACGTTCCTCCTCCTGCGGAAGGTA
CATATGGGTTTTCAATTCCCAAACCGTGTGGACTACATCCTGAGAGAGTA
GAAGAATACCCGAGTTACGATGAAGCGGAAATGATATCCTCTACCCTTCC
AGAGCAAGTGGAGAATTGGATTGCAGATAATGGACGGGCTGATCTGAATC
ACCTTGGCATTTCGGGAGATGATAACAGTTATCAGTATTGTTGGGGGGCT
GCTCCGAATACCAAAGTTGGAGGGTATATTGCTTGGTCGAATGCATATGA
TACCTGCAAATGCAATGATTGTGGTGCTGTAATGGACCATCTGCTCTCCA
TTTCTAGTGGCGATTATGGCGGTGATTCTACTCGATGGTTCCCCATCGAT
GAGAGTCGACAAGAAGCGCGTGATGGTCATGACTTGTGTATAGGTGATGG
TGAAGTTTACGTGTTGTTCATCTGTCGAAAGTGTGAACATTGGCCAATCA
AGAACTTGATTGCATAG
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protein sequence of Ggra3339.t1

>Ggra3339.t1 ID=Ggra3339.t1|Name=Ggra3339.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MPKTYTPTFDLSTHFPQLPKKLAVFLHPRKTTHALSTLSSKMGGHFYWPV
NEPWPTCPVDGHNMTAILQIYRDDVAELGFPAGKNLFQLLWCPEQDHEQA
DHGFYPFCKWRYVGEDDSTRLLPLNDVPPPAEGTYGFSIPKPCGLHPERV
EEYPSYDEAEMISSTLPEQVENWIADNGRADLNHLGISGDDNSYQYCWGA
APNTKVGGYIAWSNAYDTCKCNDCGAVMDHLLSISSGDYGGDSTRWFPID
ESRQEARDGHDLCIGDGEVYVLFICRKCEHWPIKNLIA*
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mRNA from alignment at tig00000189_pilon:57152..58018-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3339.t1 ID=Ggra3339.t1|Name=Ggra3339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000189_pilon:57152..58018- (Gracilaria gracilis GNS1m male)
ATGCCAAAAACCTATACCCCAACTTTCGATCTGTCAACGCACTTCCCGCA
ACTCCCCAAGAAGCTCGCCGTGTTCCTTCATCCTCGAAAGACCACTCATG
CGCTCTCCACACTATCCTCCAAGATGGGCGGTCATTTCTACTGGCCAGTG
AACGAACCGTGGCCCACTTGTCCGGTTGATGGCCATAATATGACAGCTAT
TTTGCAGATATACCGTGATGACGTTGCTGAACTTGGGTTCCCTGCTGGCA
AGAACCTGTTCCAATTGTTGTGGTGTCCGGAACAAGACCATGAGCAGGCA
GACCATGGCTTCTATCCGTTTTGCAAATGGCGATATGTTGGTGAAGATGA
TTCGACGAGGTTGCTTCCGTTGAATGACGTTCCTCCTCCTGCGGAAGGTA
CATATGGGTTTTCAATTCCCAAACCGTGTGGACTACATCCTGAGAGAGTA
GAAGAATACCCGAGTTACGATGAAGCGGAAATGATATCCTCTACCCTTCC
AGAGCAAGTGGAGAATTGGATTGCAGATAATGGACGGGCTGATCTGAATC
ACCTTGGCATTTCGGGAGATGATAACAGTTATCAGTATTGTTGGGGGGCT
GCTCCGAATACCAAAGTTGGAGGGTATATTGCTTGGTCGAATGCATATGA
TACCTGCAAATGCAATGATTGTGGTGCTGTAATGGACCATCTGCTCTCCA
TTTCTAGTGGCGATTATGGCGGTGATTCTACTCGATGGTTCCCCATCGAT
GAGAGTCGACAAGAAGCGCGTGATGGTCATGACTTGTGTATAGGTGATGG
TGAAGTTTACGTGTTGTTCATCTGTCGAAAGTGTGAACATTGGCCAATCA
AGAACTTGATTGCATAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:57152..58018-

>Ggra3339.t1 ID=Ggra3339.t1|Name=Ggra3339.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000189_pilon:57152..58018- (Gracilaria gracilis GNS1m male)
ATGCCAAAAACCTATACCCCAACTTTCGATCTGTCAACGCACTTCCCGCA
ACTCCCCAAGAAGCTCGCCGTGTTCCTTCATCCTCGAAAGACCACTCATG
CGCTCTCCACACTATCCTCCAAGATGGGCGGTCATTTCTACTGGCCAGTG
AACGAACCGTGGCCCACTTGTCCGGTTGATGGCCATAATATGACAGCTAT
TTTGCAGATATACCGTGATGACGTTGCTGAACTTGGGTTCCCTGCTGGCA
AGAACCTGTTCCAATTGTTGTGGTGTCCGGAACAAGACCATGAGCAGGCA
GACCATGGCTTCTATCCGTTTTGCAAATGGCGATATGTTGGTGAAGATGA
TTCGACGAGGTTGCTTCCGTTGAATGACGTTCCTCCTCCTGCGGAAGGTA
CATATGGGTTTTCAATTCCCAAACCGTGTGGACTACATCCTGAGAGAGTA
GAAGAATACCCGAGTTACGATGAAGCGGAAATGATATCCTCTACCCTTCC
AGAGCAAGTGGAGAATTGGATTGCAGATAATGGACGGGCTGATCTGAATC
ACCTTGGCATTTCGGGAGATGATAACAGTTATCAGTATTGTTGGGGGGCT
GCTCCGAATACCAAAGTTGGAGGGTATATTGCTTGGTCGAATGCATATGA
TACCTGCAAATGCAATGATTGTGGTGCTGTAATGGACCATCTGCTCTCCA
TTTCTAGTGGCGATTATGGCGGTGATTCTACTCGATGGTTCCCCATCGAT
GAGAGTCGACAAGAAGCGCGTGATGGTCATGACTTGTGTATAGGTGATGG
TGAAGTTTACGTGTTGTTCATCTGTCGAAAGTGTGAACATTGGCCAATCA
AGAACTTGATTGCATAG
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