Ggra3336.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3336.t1
Unique NameGgra3336.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length335
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:47403..48407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_01468T0
PFAMsAbhydrolase_1
Max annot lvl33154|Opisthokonta
KEGG koko:K18053
Evalue3.81e-86
EggNOG OGsCOG0596@1|root,KOG4178@2759|Eukaryota,39VYC@33154|Opisthokonta
EC1.13.12.5
Descriptionalpha/beta hydrolase fold
COG categoryI
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3336Ggra3336Gracilaria gracilis GNS1m malegenetig00000189_pilon 47403..48407 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3336.t1.stop1Ggra3336.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 47403..47405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3336.t1.CDS1Ggra3336.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 47403..48407 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3336.t1.exon1Ggra3336.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 47403..48407 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3336.t1.start1Ggra3336.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 48405..48407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3336.t1Ggra3336.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 47403..48407 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3336.t1 ID=Ggra3336.t1|Name=Ggra3336.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=335bp
MVSVCIPLLLSALLLSPLVTCVQDEIRTSSTGIRFVRTPFSRFDIVSDFP
TTTRYVMVSGLRMAYTDAGYATHGTILLLHGEPDWAYLYRSMIPTLTRAG
YRVIAPDYIGFGRSDKPVNRSVYTYNSHVNWMKQFLKVIDVRRLHAFLQD
WGGLIGLTIAAEDPTRFDRLVLANTVLPDGTGIPNFEIWRTQSQVLDPFD
SGLIIQDFTSRNLTNAETAAYNAPFPSELYLAGARQFPLIVPLTPTDVGA
PRFLSVREQLKSWKRPVLLQWGTADPILTKRFFDDFRQLIPGTDGQPHAL
YPEVNHFMQEDVGPYVADAMVRWLAATSETNVCV*
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spliced messenger RNA

>Ggra3336.t1 ID=Ggra3336.t1|Name=Ggra3336.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00000189_pilon:47403..48407- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCAGTTTGCATTCCGTTGTTGCTATCTGCTCTACTTCTCTCTCC
TCTCGTCACCTGCGTTCAAGATGAGATCCGTACTTCATCAACTGGCATCC
GCTTCGTTCGTACCCCGTTTTCGCGTTTTGATATCGTCTCAGATTTCCCC
ACCACCACTCGCTATGTGATGGTGTCTGGCCTTCGTATGGCCTATACGGA
CGCTGGCTACGCCACACACGGAACTATTCTTCTGCTGCACGGCGAACCGG
ACTGGGCATATCTGTACCGTTCTATGATCCCTACCCTCACTCGAGCCGGC
TATCGAGTAATCGCTCCGGACTATATTGGATTCGGACGCTCTGACAAACC
TGTCAACCGCTCTGTGTACACTTACAACTCGCATGTAAACTGGATGAAAC
AGTTCCTCAAAGTTATCGATGTTCGCCGTTTGCATGCCTTTCTCCAGGAT
TGGGGTGGACTCATTGGTTTGACCATAGCCGCCGAAGATCCCACCCGCTT
TGACAGACTTGTGCTAGCCAACACAGTTCTTCCAGATGGAACCGGCATTC
CAAACTTCGAGATTTGGAGAACGCAATCTCAAGTCTTAGACCCATTTGAC
TCTGGGCTCATCATTCAAGACTTTACCTCTCGGAATCTAACTAACGCTGA
AACTGCAGCGTACAACGCACCGTTCCCAAGCGAGTTATATCTGGCAGGTG
CGCGTCAGTTCCCCCTAATTGTGCCACTAACTCCGACAGACGTGGGTGCG
CCTCGCTTTCTAAGTGTGCGCGAACAGCTCAAATCTTGGAAACGACCAGT
TTTGCTCCAATGGGGAACTGCAGACCCCATTCTCACGAAGAGATTCTTCG
ATGATTTCAGACAACTGATACCTGGAACTGACGGGCAGCCACACGCATTG
TATCCAGAAGTGAACCACTTCATGCAAGAAGATGTTGGTCCGTATGTAGC
GGACGCCATGGTGCGCTGGTTGGCGGCGACGTCAGAAACGAATGTGTGCG
TTTGA
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protein sequence of Ggra3336.t1

>Ggra3336.t1 ID=Ggra3336.t1|Name=Ggra3336.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=335bp
MVSVCIPLLLSALLLSPLVTCVQDEIRTSSTGIRFVRTPFSRFDIVSDFP
TTTRYVMVSGLRMAYTDAGYATHGTILLLHGEPDWAYLYRSMIPTLTRAG
YRVIAPDYIGFGRSDKPVNRSVYTYNSHVNWMKQFLKVIDVRRLHAFLQD
WGGLIGLTIAAEDPTRFDRLVLANTVLPDGTGIPNFEIWRTQSQVLDPFD
SGLIIQDFTSRNLTNAETAAYNAPFPSELYLAGARQFPLIVPLTPTDVGA
PRFLSVREQLKSWKRPVLLQWGTADPILTKRFFDDFRQLIPGTDGQPHAL
YPEVNHFMQEDVGPYVADAMVRWLAATSETNVCV*
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mRNA from alignment at tig00000189_pilon:47403..48407-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3336.t1 ID=Ggra3336.t1|Name=Ggra3336.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00000189_pilon:47403..48407- (Gracilaria gracilis GNS1m male)
ATGGTTTCAGTTTGCATTCCGTTGTTGCTATCTGCTCTACTTCTCTCTCC
TCTCGTCACCTGCGTTCAAGATGAGATCCGTACTTCATCAACTGGCATCC
GCTTCGTTCGTACCCCGTTTTCGCGTTTTGATATCGTCTCAGATTTCCCC
ACCACCACTCGCTATGTGATGGTGTCTGGCCTTCGTATGGCCTATACGGA
CGCTGGCTACGCCACACACGGAACTATTCTTCTGCTGCACGGCGAACCGG
ACTGGGCATATCTGTACCGTTCTATGATCCCTACCCTCACTCGAGCCGGC
TATCGAGTAATCGCTCCGGACTATATTGGATTCGGACGCTCTGACAAACC
TGTCAACCGCTCTGTGTACACTTACAACTCGCATGTAAACTGGATGAAAC
AGTTCCTCAAAGTTATCGATGTTCGCCGTTTGCATGCCTTTCTCCAGGAT
TGGGGTGGACTCATTGGTTTGACCATAGCCGCCGAAGATCCCACCCGCTT
TGACAGACTTGTGCTAGCCAACACAGTTCTTCCAGATGGAACCGGCATTC
CAAACTTCGAGATTTGGAGAACGCAATCTCAAGTCTTAGACCCATTTGAC
TCTGGGCTCATCATTCAAGACTTTACCTCTCGGAATCTAACTAACGCTGA
AACTGCAGCGTACAACGCACCGTTCCCAAGCGAGTTATATCTGGCAGGTG
CGCGTCAGTTCCCCCTAATTGTGCCACTAACTCCGACAGACGTGGGTGCG
CCTCGCTTTCTAAGTGTGCGCGAACAGCTCAAATCTTGGAAACGACCAGT
TTTGCTCCAATGGGGAACTGCAGACCCCATTCTCACGAAGAGATTCTTCG
ATGATTTCAGACAACTGATACCTGGAACTGACGGGCAGCCACACGCATTG
TATCCAGAAGTGAACCACTTCATGCAAGAAGATGTTGGTCCGTATGTAGC
GGACGCCATGGTGCGCTGGTTGGCGGCGACGTCAGAAACGAATGTGTGCG
TTTGA
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Coding sequence (CDS) from alignment at tig00000189_pilon:47403..48407-

>Ggra3336.t1 ID=Ggra3336.t1|Name=Ggra3336.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1005bp|location=Sequence derived from alignment at tig00000189_pilon:47403..48407- (Gracilaria gracilis GNS1m male)
ATGGTTTCAGTTTGCATTCCGTTGTTGCTATCTGCTCTACTTCTCTCTCC
TCTCGTCACCTGCGTTCAAGATGAGATCCGTACTTCATCAACTGGCATCC
GCTTCGTTCGTACCCCGTTTTCGCGTTTTGATATCGTCTCAGATTTCCCC
ACCACCACTCGCTATGTGATGGTGTCTGGCCTTCGTATGGCCTATACGGA
CGCTGGCTACGCCACACACGGAACTATTCTTCTGCTGCACGGCGAACCGG
ACTGGGCATATCTGTACCGTTCTATGATCCCTACCCTCACTCGAGCCGGC
TATCGAGTAATCGCTCCGGACTATATTGGATTCGGACGCTCTGACAAACC
TGTCAACCGCTCTGTGTACACTTACAACTCGCATGTAAACTGGATGAAAC
AGTTCCTCAAAGTTATCGATGTTCGCCGTTTGCATGCCTTTCTCCAGGAT
TGGGGTGGACTCATTGGTTTGACCATAGCCGCCGAAGATCCCACCCGCTT
TGACAGACTTGTGCTAGCCAACACAGTTCTTCCAGATGGAACCGGCATTC
CAAACTTCGAGATTTGGAGAACGCAATCTCAAGTCTTAGACCCATTTGAC
TCTGGGCTCATCATTCAAGACTTTACCTCTCGGAATCTAACTAACGCTGA
AACTGCAGCGTACAACGCACCGTTCCCAAGCGAGTTATATCTGGCAGGTG
CGCGTCAGTTCCCCCTAATTGTGCCACTAACTCCGACAGACGTGGGTGCG
CCTCGCTTTCTAAGTGTGCGCGAACAGCTCAAATCTTGGAAACGACCAGT
TTTGCTCCAATGGGGAACTGCAGACCCCATTCTCACGAAGAGATTCTTCG
ATGATTTCAGACAACTGATACCTGGAACTGACGGGCAGCCACACGCATTG
TATCCAGAAGTGAACCACTTCATGCAAGAAGATGTTGGTCCGTATGTAGC
GGACGCCATGGTGCGCTGGTTGGCGGCGACGTCAGAAACGAATGTGTGCG
TTTGA
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