Ggra3334.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3334.t1
Unique NameGgra3334.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:39123..39689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3334Ggra3334Gracilaria gracilis GNS1m malegenetig00000189_pilon 39123..39689 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3334.t1.start1Ggra3334.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 39123..39125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3334.t1.CDS1Ggra3334.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 39123..39689 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3334.t1.exon1Ggra3334.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 39123..39689 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3334.t1.stop1Ggra3334.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 39687..39689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3334.t1Ggra3334.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 39123..39689 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3334.t1 ID=Ggra3334.t1|Name=Ggra3334.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=189bp
MATHSATATNRPQQIAINNFGASTSQPFSSISPATASRRELAKAMKQSGG
VLLVRDLSAGTAPLQAVASLFEGVATHPDPSVRANKAYSKNLIFKDSFAA
GNGGSKVDQKRILGGVFMYKPPLLIISKGGLHVTLVDIVDILLLYDTTAL
LVYEFYLSSTLIGAENCPILSEVSQVELHVWSESARGL*
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spliced messenger RNA

>Ggra3334.t1 ID=Ggra3334.t1|Name=Ggra3334.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000189_pilon:39123..39689+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCCACAGCGCTACCGCCACCAACAGACCGCAGCAGATAGCCAT
CAACAATTTCGGAGCTTCCACGTCACAGCCTTTTTCGTCCATTTCCCCAG
CCACCGCCAGCCGTAGGGAGCTTGCAAAAGCTATGAAGCAAAGCGGTGGT
GTATTGCTTGTTCGAGACCTCTCCGCCGGCACAGCGCCATTGCAGGCTGT
AGCAAGCCTGTTCGAAGGCGTTGCAACTCATCCAGACCCGTCGGTCCGCG
CCAACAAGGCCTACTCAAAGAACCTAATCTTCAAGGATTCGTTCGCTGCT
GGGAACGGTGGCAGCAAAGTCGACCAGAAACGCATTCTTGGTGGGGTCTT
TATGTATAAGCCACCACTACTGATCATCAGTAAGGGTGGCTTGCACGTTA
CCTTGGTAGATATCGTAGATATCTTATTACTGTATGATACGACTGCATTG
CTGGTATATGAATTCTACTTGTCAAGTACATTAATTGGCGCAGAGAATTG
TCCAATTCTGTCCGAAGTCTCGCAGGTAGAATTACACGTTTGGTCAGAAT
CTGCCAGAGGTCTATAG
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protein sequence of Ggra3334.t1

>Ggra3334.t1 ID=Ggra3334.t1|Name=Ggra3334.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MATHSATATNRPQQIAINNFGASTSQPFSSISPATASRRELAKAMKQSGG
VLLVRDLSAGTAPLQAVASLFEGVATHPDPSVRANKAYSKNLIFKDSFAA
GNGGSKVDQKRILGGVFMYKPPLLIISKGGLHVTLVDIVDILLLYDTTAL
LVYEFYLSSTLIGAENCPILSEVSQVELHVWSESARGL*
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mRNA from alignment at tig00000189_pilon:39123..39689+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3334.t1 ID=Ggra3334.t1|Name=Ggra3334.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000189_pilon:39123..39689+ (Gracilaria gracilis GNS1m male)
ATGGCCACCCACAGCGCTACCGCCACCAACAGACCGCAGCAGATAGCCAT
CAACAATTTCGGAGCTTCCACGTCACAGCCTTTTTCGTCCATTTCCCCAG
CCACCGCCAGCCGTAGGGAGCTTGCAAAAGCTATGAAGCAAAGCGGTGGT
GTATTGCTTGTTCGAGACCTCTCCGCCGGCACAGCGCCATTGCAGGCTGT
AGCAAGCCTGTTCGAAGGCGTTGCAACTCATCCAGACCCGTCGGTCCGCG
CCAACAAGGCCTACTCAAAGAACCTAATCTTCAAGGATTCGTTCGCTGCT
GGGAACGGTGGCAGCAAAGTCGACCAGAAACGCATTCTTGGTGGGGTCTT
TATGTATAAGCCACCACTACTGATCATCAGTAAGGGTGGCTTGCACGTTA
CCTTGGTAGATATCGTAGATATCTTATTACTGTATGATACGACTGCATTG
CTGGTATATGAATTCTACTTGTCAAGTACATTAATTGGCGCAGAGAATTG
TCCAATTCTGTCCGAAGTCTCGCAGGTAGAATTACACGTTTGGTCAGAAT
CTGCCAGAGGTCTATAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:39123..39689+

>Ggra3334.t1 ID=Ggra3334.t1|Name=Ggra3334.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00000189_pilon:39123..39689+ (Gracilaria gracilis GNS1m male)
ATGGCCACCCACAGCGCTACCGCCACCAACAGACCGCAGCAGATAGCCAT
CAACAATTTCGGAGCTTCCACGTCACAGCCTTTTTCGTCCATTTCCCCAG
CCACCGCCAGCCGTAGGGAGCTTGCAAAAGCTATGAAGCAAAGCGGTGGT
GTATTGCTTGTTCGAGACCTCTCCGCCGGCACAGCGCCATTGCAGGCTGT
AGCAAGCCTGTTCGAAGGCGTTGCAACTCATCCAGACCCGTCGGTCCGCG
CCAACAAGGCCTACTCAAAGAACCTAATCTTCAAGGATTCGTTCGCTGCT
GGGAACGGTGGCAGCAAAGTCGACCAGAAACGCATTCTTGGTGGGGTCTT
TATGTATAAGCCACCACTACTGATCATCAGTAAGGGTGGCTTGCACGTTA
CCTTGGTAGATATCGTAGATATCTTATTACTGTATGATACGACTGCATTG
CTGGTATATGAATTCTACTTGTCAAGTACATTAATTGGCGCAGAGAATTG
TCCAATTCTGTCCGAAGTCTCGCAGGTAGAATTACACGTTTGGTCAGAAT
CTGCCAGAGGTCTATAG
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