Ggra3333.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3333.t1
Unique NameGgra3333.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:35413..36117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1333998.M2A_3185
Preferred nameomp28
PFAMsSIMPL
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K09807
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
Evalue9.46e-43
EggNOG OGsCOG2968@1|root,COG2968@2|Bacteria,1RH7T@1224|Proteobacteria,2U981@28211|Alphaproteobacteria,4BS7M@82117|unclassified Alphaproteobacteria
DescriptionProtein of unknown function (DUF541)
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3333Ggra3333Gracilaria gracilis GNS1m malegenetig00000189_pilon 35413..36117 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3333.t1.stop1Ggra3333.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 35413..35415 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3333.t1.CDS1Ggra3333.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 35413..36117 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3333.t1.exon1Ggra3333.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 35413..36117 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3333.t1.start1Ggra3333.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 36115..36117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3333.t1Ggra3333.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 35413..36117 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3333.t1 ID=Ggra3333.t1|Name=Ggra3333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=235bp
MNSTTKNIFAFALVLFAASVVQSNAQAVPRTISVSGEGSVSAPPDMATVS
TGVVTTAATAQAALAANSQQFDQVLAVLTEQGIESRDVQTTFFDVNPQFQ
RGPNGEDQGITGYQVTNQVRVVVRDLDNLGRILDALVSAGSNRISGVNFS
IGNDMELRNRARALAVADATSRAGVYAQAAEVKVGELIAISEQSIPQPQL
RQSFGALAADASVPIATGELDVQATVFLQFALVD*
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spliced messenger RNA

>Ggra3333.t1 ID=Ggra3333.t1|Name=Ggra3333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000189_pilon:35413..36117- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCGACAACGAAGAACATCTTCGCGTTTGCTTTGGTGCTGTTCGC
CGCATCCGTTGTTCAATCAAATGCTCAAGCCGTGCCTCGTACAATCAGTG
TGTCTGGTGAGGGAAGCGTATCCGCACCTCCAGATATGGCCACAGTAAGT
ACTGGAGTCGTAACGACAGCGGCCACAGCACAAGCAGCATTAGCGGCCAA
CAGTCAACAGTTTGATCAAGTGCTGGCTGTCCTTACTGAACAAGGAATCG
AAAGCAGAGATGTTCAAACAACTTTCTTTGACGTGAATCCGCAATTTCAG
CGTGGGCCGAACGGTGAAGATCAGGGCATCACTGGGTATCAAGTGACAAA
TCAAGTGCGAGTGGTTGTTCGCGATTTGGACAACTTGGGAAGGATTCTTG
ATGCGCTTGTCTCAGCTGGTAGCAATCGCATTTCCGGTGTGAACTTCAGC
ATTGGTAATGATATGGAACTGCGTAACCGTGCTCGCGCCCTGGCTGTTGC
CGATGCGACCAGTCGGGCAGGAGTGTACGCACAAGCAGCTGAAGTCAAGG
TTGGAGAATTAATAGCTATCAGCGAACAATCAATTCCGCAGCCGCAGCTT
CGTCAGTCATTCGGTGCTCTCGCTGCCGATGCATCGGTACCGATTGCTAC
CGGTGAACTTGACGTTCAGGCTACGGTCTTCCTTCAGTTCGCGCTAGTTG
ACTAA
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protein sequence of Ggra3333.t1

>Ggra3333.t1 ID=Ggra3333.t1|Name=Ggra3333.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MNSTTKNIFAFALVLFAASVVQSNAQAVPRTISVSGEGSVSAPPDMATVS
TGVVTTAATAQAALAANSQQFDQVLAVLTEQGIESRDVQTTFFDVNPQFQ
RGPNGEDQGITGYQVTNQVRVVVRDLDNLGRILDALVSAGSNRISGVNFS
IGNDMELRNRARALAVADATSRAGVYAQAAEVKVGELIAISEQSIPQPQL
RQSFGALAADASVPIATGELDVQATVFLQFALVD*
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mRNA from alignment at tig00000189_pilon:35413..36117-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3333.t1 ID=Ggra3333.t1|Name=Ggra3333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000189_pilon:35413..36117- (Gracilaria gracilis GNS1m male)
ATGAATTCGACAACGAAGAACATCTTCGCGTTTGCTTTGGTGCTGTTCGC
CGCATCCGTTGTTCAATCAAATGCTCAAGCCGTGCCTCGTACAATCAGTG
TGTCTGGTGAGGGAAGCGTATCCGCACCTCCAGATATGGCCACAGTAAGT
ACTGGAGTCGTAACGACAGCGGCCACAGCACAAGCAGCATTAGCGGCCAA
CAGTCAACAGTTTGATCAAGTGCTGGCTGTCCTTACTGAACAAGGAATCG
AAAGCAGAGATGTTCAAACAACTTTCTTTGACGTGAATCCGCAATTTCAG
CGTGGGCCGAACGGTGAAGATCAGGGCATCACTGGGTATCAAGTGACAAA
TCAAGTGCGAGTGGTTGTTCGCGATTTGGACAACTTGGGAAGGATTCTTG
ATGCGCTTGTCTCAGCTGGTAGCAATCGCATTTCCGGTGTGAACTTCAGC
ATTGGTAATGATATGGAACTGCGTAACCGTGCTCGCGCCCTGGCTGTTGC
CGATGCGACCAGTCGGGCAGGAGTGTACGCACAAGCAGCTGAAGTCAAGG
TTGGAGAATTAATAGCTATCAGCGAACAATCAATTCCGCAGCCGCAGCTT
CGTCAGTCATTCGGTGCTCTCGCTGCCGATGCATCGGTACCGATTGCTAC
CGGTGAACTTGACGTTCAGGCTACGGTCTTCCTTCAGTTCGCGCTAGTTG
ACTAA
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Coding sequence (CDS) from alignment at tig00000189_pilon:35413..36117-

>Ggra3333.t1 ID=Ggra3333.t1|Name=Ggra3333.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00000189_pilon:35413..36117- (Gracilaria gracilis GNS1m male)
ATGAATTCGACAACGAAGAACATCTTCGCGTTTGCTTTGGTGCTGTTCGC
CGCATCCGTTGTTCAATCAAATGCTCAAGCCGTGCCTCGTACAATCAGTG
TGTCTGGTGAGGGAAGCGTATCCGCACCTCCAGATATGGCCACAGTAAGT
ACTGGAGTCGTAACGACAGCGGCCACAGCACAAGCAGCATTAGCGGCCAA
CAGTCAACAGTTTGATCAAGTGCTGGCTGTCCTTACTGAACAAGGAATCG
AAAGCAGAGATGTTCAAACAACTTTCTTTGACGTGAATCCGCAATTTCAG
CGTGGGCCGAACGGTGAAGATCAGGGCATCACTGGGTATCAAGTGACAAA
TCAAGTGCGAGTGGTTGTTCGCGATTTGGACAACTTGGGAAGGATTCTTG
ATGCGCTTGTCTCAGCTGGTAGCAATCGCATTTCCGGTGTGAACTTCAGC
ATTGGTAATGATATGGAACTGCGTAACCGTGCTCGCGCCCTGGCTGTTGC
CGATGCGACCAGTCGGGCAGGAGTGTACGCACAAGCAGCTGAAGTCAAGG
TTGGAGAATTAATAGCTATCAGCGAACAATCAATTCCGCAGCCGCAGCTT
CGTCAGTCATTCGGTGCTCTCGCTGCCGATGCATCGGTACCGATTGCTAC
CGGTGAACTTGACGTTCAGGCTACGGTCTTCCTTCAGTTCGCGCTAGTTG
ACTAA
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