Ggra3329.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3329.t1
Unique Name	Ggra3329.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	421

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000232_pilon	contig	tig00000232_pilon:77673..78935 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3329	Ggra3329	Gracilaria gracilis GNS1m male	gene	tig00000232_pilon 77673..78935 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3329.t1.start1	Ggra3329.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000232_pilon 77673..77675 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3329.t1.CDS1	Ggra3329.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000232_pilon 77673..78935 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3329.t1.exon1	Ggra3329.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000232_pilon 77673..78935 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3329.t1.stop1	Ggra3329.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000232_pilon 78933..78935 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3329.t1	Ggra3329.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000232_pilon 77673..78935 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000232_pilon:77673..78935+
coding sequence from alignment at tig00000232_pilon:77673..78935+

mRNA sequence

>Ggra3329.t1 ID=Ggra3329.t1|Name=Ggra3329.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=421bp
MSGTNLPVRFEVGNMLIWVWLEVLALGALILWTTNAAHIIMGFNLKQANV
IRLSKKRKAIDWFPMNADIRELPVPSKVVLTLIRIAVTIAVAVSALGIEP
GEQFINWQPSTDFVVANDANFSGRSFNSREPDLLQDFAVSACEDVNTISL
VKHKAFISQQSFSCNDGSLFGTKTVLVEVIWHKDTVREIAHGEKLPVNIE
LGDTSDVTENRSNATDVEISSSDGAPIFMFVTRRRLTNQTFGDCPGEREY
LLVGNSPSADISNHNVAVSYVICEPGSTVFLRNTDRMIFLSDLGANQQMI
LARQVAESLVSIVGDESGRVYEGDRRKVTILEAGYDVFVLALAVGNTLLV
FMSAVLKKAVTSDLDVDVFSSFSMYRLGSSFCNGENRLGASIDGDIVLKG
KYEGDVLKVTPLGAGKMSER*

spliced messenger RNA

>Ggra3329.t1 ID=Ggra3329.t1|Name=Ggra3329.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000232_pilon:77673..78935+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGAACAAATCTCCCGGTTCGCTTCGAGGTGGGCAACATGCTCAT
CTGGGTTTGGTTGGAAGTGCTCGCCCTCGGCGCGCTCATTCTATGGACAA
CCAATGCCGCTCACATCATCATGGGTTTCAATCTGAAGCAAGCCAACGTC
ATCCGCCTTTCGAAGAAGCGGAAGGCCATTGATTGGTTTCCAATGAACGC
AGATATCCGTGAGCTACCCGTCCCTTCCAAAGTTGTTCTCACATTAATTC
GCATAGCCGTAACCATCGCCGTCGCCGTTAGTGCACTGGGCATCGAACCT
GGTGAACAGTTCATCAACTGGCAGCCTAGCACTGATTTTGTTGTGGCCAA
TGATGCCAACTTCTCGGGAAGATCGTTCAACAGCAGGGAACCTGATTTGT
TGCAGGACTTTGCTGTCAGTGCTTGTGAAGATGTCAACACCATATCGCTT
GTCAAACACAAGGCTTTCATCTCTCAGCAGTCGTTCTCTTGTAATGACGG
CTCATTGTTCGGGACGAAAACTGTTCTCGTAGAAGTGATATGGCATAAGG
ATACTGTTCGAGAGATTGCCCATGGAGAGAAACTACCTGTCAATATTGAA
CTGGGAGACACGTCAGACGTGACGGAGAATCGATCTAATGCAACTGACGT
TGAAATCTCATCGTCCGACGGTGCACCCATTTTCATGTTCGTAACCAGGA
GAAGGCTCACAAATCAAACCTTCGGAGACTGTCCAGGCGAACGGGAATAC
TTGCTTGTTGGCAATAGTCCAAGTGCAGACATTTCGAACCACAACGTTGC
TGTGTCGTATGTGATCTGTGAACCTGGCTCAACAGTGTTTCTGCGAAACA
CAGATAGGATGATCTTCTTATCCGATCTGGGAGCAAATCAACAGATGATA
CTCGCCAGACAGGTTGCTGAGTCTCTTGTTTCAATAGTTGGAGATGAATC
AGGAAGGGTATACGAAGGGGATCGAAGGAAAGTTACTATTCTGGAAGCCG
GATACGATGTTTTTGTCTTGGCTTTAGCGGTTGGAAATACACTTCTGGTG
TTTATGTCAGCTGTTTTAAAGAAAGCGGTCACCAGTGATCTAGATGTAGA
CGTGTTTTCATCGTTTTCAATGTACAGACTGGGCTCCTCCTTTTGCAACG
GAGAGAATAGGTTGGGTGCCTCGATTGATGGAGACATCGTATTAAAAGGG
AAATACGAAGGTGACGTTTTGAAAGTGACGCCGCTGGGAGCAGGAAAAAT
GTCTGAAAGATAG

protein sequence of Ggra3329.t1

>Ggra3329.t1 ID=Ggra3329.t1|Name=Ggra3329.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=421bp
MSGTNLPVRFEVGNMLIWVWLEVLALGALILWTTNAAHIIMGFNLKQANV
IRLSKKRKAIDWFPMNADIRELPVPSKVVLTLIRIAVTIAVAVSALGIEP
GEQFINWQPSTDFVVANDANFSGRSFNSREPDLLQDFAVSACEDVNTISL
VKHKAFISQQSFSCNDGSLFGTKTVLVEVIWHKDTVREIAHGEKLPVNIE
LGDTSDVTENRSNATDVEISSSDGAPIFMFVTRRRLTNQTFGDCPGEREY
LLVGNSPSADISNHNVAVSYVICEPGSTVFLRNTDRMIFLSDLGANQQMI
LARQVAESLVSIVGDESGRVYEGDRRKVTILEAGYDVFVLALAVGNTLLV
FMSAVLKKAVTSDLDVDVFSSFSMYRLGSSFCNGENRLGASIDGDIVLKG
KYEGDVLKVTPLGAGKMSER*

mRNA from alignment at tig00000232_pilon:77673..78935+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3329.t1 ID=Ggra3329.t1|Name=Ggra3329.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000232_pilon:77673..78935+ (Gracilaria gracilis GNS1m male)
ATGTCTGGAACAAATCTCCCGGTTCGCTTCGAGGTGGGCAACATGCTCAT
CTGGGTTTGGTTGGAAGTGCTCGCCCTCGGCGCGCTCATTCTATGGACAA
CCAATGCCGCTCACATCATCATGGGTTTCAATCTGAAGCAAGCCAACGTC
ATCCGCCTTTCGAAGAAGCGGAAGGCCATTGATTGGTTTCCAATGAACGC
AGATATCCGTGAGCTACCCGTCCCTTCCAAAGTTGTTCTCACATTAATTC
GCATAGCCGTAACCATCGCCGTCGCCGTTAGTGCACTGGGCATCGAACCT
GGTGAACAGTTCATCAACTGGCAGCCTAGCACTGATTTTGTTGTGGCCAA
TGATGCCAACTTCTCGGGAAGATCGTTCAACAGCAGGGAACCTGATTTGT
TGCAGGACTTTGCTGTCAGTGCTTGTGAAGATGTCAACACCATATCGCTT
GTCAAACACAAGGCTTTCATCTCTCAGCAGTCGTTCTCTTGTAATGACGG
CTCATTGTTCGGGACGAAAACTGTTCTCGTAGAAGTGATATGGCATAAGG
ATACTGTTCGAGAGATTGCCCATGGAGAGAAACTACCTGTCAATATTGAA
CTGGGAGACACGTCAGACGTGACGGAGAATCGATCTAATGCAACTGACGT
TGAAATCTCATCGTCCGACGGTGCACCCATTTTCATGTTCGTAACCAGGA
GAAGGCTCACAAATCAAACCTTCGGAGACTGTCCAGGCGAACGGGAATAC
TTGCTTGTTGGCAATAGTCCAAGTGCAGACATTTCGAACCACAACGTTGC
TGTGTCGTATGTGATCTGTGAACCTGGCTCAACAGTGTTTCTGCGAAACA
CAGATAGGATGATCTTCTTATCCGATCTGGGAGCAAATCAACAGATGATA
CTCGCCAGACAGGTTGCTGAGTCTCTTGTTTCAATAGTTGGAGATGAATC
AGGAAGGGTATACGAAGGGGATCGAAGGAAAGTTACTATTCTGGAAGCCG
GATACGATGTTTTTGTCTTGGCTTTAGCGGTTGGAAATACACTTCTGGTG
TTTATGTCAGCTGTTTTAAAGAAAGCGGTCACCAGTGATCTAGATGTAGA
CGTGTTTTCATCGTTTTCAATGTACAGACTGGGCTCCTCCTTTTGCAACG
GAGAGAATAGGTTGGGTGCCTCGATTGATGGAGACATCGTATTAAAAGGG
AAATACGAAGGTGACGTTTTGAAAGTGACGCCGCTGGGAGCAGGAAAAAT
GTCTGAAAGATAG

Coding sequence (CDS) from alignment at tig00000232_pilon:77673..78935+

>Ggra3329.t1 ID=Ggra3329.t1|Name=Ggra3329.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1263bp|location=Sequence derived from alignment at tig00000232_pilon:77673..78935+ (Gracilaria gracilis GNS1m male)
ATGTCTGGAACAAATCTCCCGGTTCGCTTCGAGGTGGGCAACATGCTCAT
CTGGGTTTGGTTGGAAGTGCTCGCCCTCGGCGCGCTCATTCTATGGACAA
CCAATGCCGCTCACATCATCATGGGTTTCAATCTGAAGCAAGCCAACGTC
ATCCGCCTTTCGAAGAAGCGGAAGGCCATTGATTGGTTTCCAATGAACGC
AGATATCCGTGAGCTACCCGTCCCTTCCAAAGTTGTTCTCACATTAATTC
GCATAGCCGTAACCATCGCCGTCGCCGTTAGTGCACTGGGCATCGAACCT
GGTGAACAGTTCATCAACTGGCAGCCTAGCACTGATTTTGTTGTGGCCAA
TGATGCCAACTTCTCGGGAAGATCGTTCAACAGCAGGGAACCTGATTTGT
TGCAGGACTTTGCTGTCAGTGCTTGTGAAGATGTCAACACCATATCGCTT
GTCAAACACAAGGCTTTCATCTCTCAGCAGTCGTTCTCTTGTAATGACGG
CTCATTGTTCGGGACGAAAACTGTTCTCGTAGAAGTGATATGGCATAAGG
ATACTGTTCGAGAGATTGCCCATGGAGAGAAACTACCTGTCAATATTGAA
CTGGGAGACACGTCAGACGTGACGGAGAATCGATCTAATGCAACTGACGT
TGAAATCTCATCGTCCGACGGTGCACCCATTTTCATGTTCGTAACCAGGA
GAAGGCTCACAAATCAAACCTTCGGAGACTGTCCAGGCGAACGGGAATAC
TTGCTTGTTGGCAATAGTCCAAGTGCAGACATTTCGAACCACAACGTTGC
TGTGTCGTATGTGATCTGTGAACCTGGCTCAACAGTGTTTCTGCGAAACA
CAGATAGGATGATCTTCTTATCCGATCTGGGAGCAAATCAACAGATGATA
CTCGCCAGACAGGTTGCTGAGTCTCTTGTTTCAATAGTTGGAGATGAATC
AGGAAGGGTATACGAAGGGGATCGAAGGAAAGTTACTATTCTGGAAGCCG
GATACGATGTTTTTGTCTTGGCTTTAGCGGTTGGAAATACACTTCTGGTG
TTTATGTCAGCTGTTTTAAAGAAAGCGGTCACCAGTGATCTAGATGTAGA
CGTGTTTTCATCGTTTTCAATGTACAGACTGGGCTCCTCCTTTTGCAACG
GAGAGAATAGGTTGGGTGCCTCGATTGATGGAGACATCGTATTAAAAGGG
AAATACGAAGGTGACGTTTTGAAAGTGACGCCGCTGGGAGCAGGAAAAAT
GTCTGAAAGATAG