Ggra3328.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3328.t1
Unique NameGgra3328.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000232_piloncontigtig00000232_pilon:74816..76688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog717774.Marme_2712
PFAMsLysM
Max annot lvl1236|Gammaproteobacteria
Evalue3.32e-35
EggNOG OGsCOG1388@1|root,COG1388@2|Bacteria,1P9XK@1224|Proteobacteria,1SVF3@1236|Gammaproteobacteria
DescriptionLysM domain
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3328Ggra3328Gracilaria gracilis GNS1m malegenetig00000232_pilon 74816..76688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3328.t1Ggra3328.t1Gracilaria gracilis GNS1m malepolypeptidetig00000232_pilon 74816..76688 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3328.t1.stop1Ggra3328.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000232_pilon 74816..74818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3328.t1.CDS1Ggra3328.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000232_pilon 74816..75034 -
Ggra3328.t1.CDS2Ggra3328.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000232_pilon 76167..76688 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3328.t1.exon1Ggra3328.t1.exon1Gracilaria gracilis GNS1m maleexontig00000232_pilon 74816..75034 -
Ggra3328.t1.exon2Ggra3328.t1.exon2Gracilaria gracilis GNS1m maleexontig00000232_pilon 76167..76688 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3328.t1.intron1Ggra3328.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000232_pilon 75035..76166 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3328.t1.start1Ggra3328.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000232_pilon 76686..76688 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3328.t1 ID=Ggra3328.t1|Name=Ggra3328.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=247bp
MRTPFFCSLFFALFAITEAQRYRGHWQKTWRVPSTAFRSANLGFAFSGYS
NVRTALSESRTVYRNLEGSKIITIGGGNYNGGWTRRTIRDVNRAIQKGYF
RNYRGIAYDIEQGDPGLTGMFLSSFKRAKRAGLFVIVTVSHTAPYGFTDA
TTIVNGLLRSRYIDIISPMMYSSGAMRFPSVLGWRGDRFRTYFVGGACCE
VVLALNPQGTFRIGPMTAGQALNTSKQLKRHFPTMFKDNSDVMDGQ*
back to top

spliced messenger RNA

>Ggra3328.t1 ID=Ggra3328.t1|Name=Ggra3328.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000232_pilon:74816..76688- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAACGCCCTTTTTCTGCTCGCTCTTCTTCGCGCTCTTCGCCATCAC
AGAGGCGCAGAGGTACCGCGGTCACTGGCAGAAGACGTGGCGAGTACCTA
GTACCGCCTTCAGGTCAGCCAATCTTGGTTTCGCATTCAGCGGCTACTCC
AATGTACGAACCGCGCTTTCCGAGAGCAGAACCGTGTACAGGAACCTTGA
AGGTTCGAAGATCATCACCATTGGTGGTGGTAATTACAATGGAGGCTGGA
CCCGTCGAACCATCCGAGACGTGAACCGCGCCATTCAGAAAGGATATTTT
AGGAACTATCGTGGAATTGCGTACGACATCGAGCAAGGTGATCCTGGTCT
CACGGGAATGTTTTTGTCTTCTTTCAAGCGTGCGAAGAGGGCTGGGTTAT
TCGTCATTGTTACTGTATCACATACAGCCCCATATGGCTTTACAGATGCC
ACTACGATTGTGAATGGGTTGCTGAGAAGTCGATACATTGACATTATCTC
GCCAATGATGTACAGCAGTGGGGCCATGAGGTTCCCTTCAGTTCTTGGTT
GGCGCGGTGACAGATTTCGTACTTATTTTGTAGGTGGGGCTTGTTGCGAA
GTGGTGTTGGCTCTGAATCCGCAAGGAACATTTCGCATCGGTCCCATGAC
GGCTGGTCAAGCTCTCAATACTTCCAAGCAGCTGAAGCGCCATTTCCCGA
CTATGTTCAAAGACAATTCAGACGTCATGGACGGACAATGA
back to top

protein sequence of Ggra3328.t1

>Ggra3328.t1 ID=Ggra3328.t1|Name=Ggra3328.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=247bp
MRTPFFCSLFFALFAITEAQRYRGHWQKTWRVPSTAFRSANLGFAFSGYS
NVRTALSESRTVYRNLEGSKIITIGGGNYNGGWTRRTIRDVNRAIQKGYF
RNYRGIAYDIEQGDPGLTGMFLSSFKRAKRAGLFVIVTVSHTAPYGFTDA
TTIVNGLLRSRYIDIISPMMYSSGAMRFPSVLGWRGDRFRTYFVGGACCE
VVLALNPQGTFRIGPMTAGQALNTSKQLKRHFPTMFKDNSDVMDGQ*
back to top

mRNA from alignment at tig00000232_pilon:74816..76688-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3328.t1 ID=Ggra3328.t1|Name=Ggra3328.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1873bp|location=Sequence derived from alignment at tig00000232_pilon:74816..76688- (Gracilaria gracilis GNS1m male)
ATGAGAACGCCCTTTTTCTGCTCGCTCTTCTTCGCGCTCTTCGCCATCAC
AGAGGCGCAGAGGTACCGCGGTCACTGGCAGAAGACGTGGCGAGTACCTA
GTACCGCCTTCAGGTCAGCCAATCTTGGTTTCGCATTCAGCGGCTACTCC
AATGTACGAACCGCGCTTTCCGAGAGCAGAACCGTGTACAGGAACCTTGA
AGGTTCGAAGATCATCACCATTGGTGGTGGTAATTACAATGGAGGCTGGA
CCCGTCGAACCATCCGAGACGTGAACCGCGCCATTCAGAAAGGATATTTT
AGGAACTATCGTGGAATTGCGTACGACATCGAGCAAGGTGATCCTGGTCT
CACGGGAATGTTTTTGTCTTCTTTCAAGCGTGCGAAGAGGGCTGGGTTAT
TCGTCATTGTTACTGTATCACATACAGCCCCATATGGCTTTACAGATGCC
ACTACGATTGTGAATGGGTTGCTGAGAAGTCGATACATTGACATTATCTC
GCCAATGATGTACAGCAGTGGGGTGAGCTTTCATGAATGCTCGCAAGCGG
GAGGGCTTGCAACCGAAGAAACCAGGGGTGTTCCTTGGAGTCGATACGCC
CGCAGTAGGGCTGCCGTCGTACCATCTATATGGCGGCCGACGTATTACAG
AAGTGCTAGATCTTTTCTTCGAAGGCATGGCGTATCAATCCAAGGATACA
TCACGTGGTGCTAGATGATCCGTATAAAATGAACTGTTCTCGGTCGGTTT
CACATCTGGATCTTAATCTAAACGTATACGTGTAGTCTAAGCGCATTTCT
CTTACAATCGTAGGGAGGTGAATGCTTTAGCTTTGTTAAAAGTCCACGGC
TAACACTAATTCTGCCGTACTGTATCATCATATCGTTTTCATTCACAGAG
CAACTACATTTGCCTGATGGAAAACAGCGATATAGAATCGATCTCCGGCT
CAAAACTATCTCCCGGTAAAACGCCATGGAAACAGCCGCCTCTACCTCAT
TACTTGCCACTGAAGCACACACCACGCACGTTGGGAGCATAGGTCGAAGT
GAAGGTCCTTCCTGTCGAGATTCAGAATTAGGACAAAACGAGGTCAGAGT
TCGGAAACTGGGAGTACTTCTTGGCCATGTCATCGCAGTGAAAAACACCC
ACGACGGCTCCTGTGCAAAGGAACAGCTCAAGCAGGCGTTCCTCGACACC
TACCATGCGGATTCTGAGCCGGGCGTCTGTGCGTTTGTGCATGATGTTCT
CCTCGCGCACGCGAAGTTCGATAAGCTTGTTAAAAGGCGGCCATGCGCTC
CCTGCCGAGACTGCCATCTATGCGCTCAACATATCCATGACATCTCTGCC
AACAAAAATACAGAAACAAATGTGTATGGCCTCGCTTCCAACGGCTTCAT
ACTCGATGGTCCACTCCTTCTCTCGCTTGCCGACTGTTATGCGTTACTAC
AACGCCACGCGGAAACTCATCGCGATCACCTCGGCCAAGAGAGACACCAA
GCTCCCCACTCTAACCGTCAAACAAGGCGCTTGACACATGCACGGGCAAA
TTGTCGACAAACGACAACGCCGTGATCAATGAATGAGACTCTGGGAAGTT
AACAGGCGCACGGAACTCTGGCTCGGAGCTAAAGATATTTTCACGCCTGT
CCAGGCCATGAGGTTCCCTTCAGTTCTTGGTTGGCGCGGTGACAGATTTC
GTACTTATTTTGTAGGTGGGGCTTGTTGCGAAGTGGTGTTGGCTCTGAAT
CCGCAAGGAACATTTCGCATCGGTCCCATGACGGCTGGTCAAGCTCTCAA
TACTTCCAAGCAGCTGAAGCGCCATTTCCCGACTATGTTCAAAGACAATT
CAGACGTCATGGACGGACAATGA
back to top

Coding sequence (CDS) from alignment at tig00000232_pilon:74816..76688-

>Ggra3328.t1 ID=Ggra3328.t1|Name=Ggra3328.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00000232_pilon:74816..76688- (Gracilaria gracilis GNS1m male)
ATGAGAACGCCCTTTTTCTGCTCGCTCTTCTTCGCGCTCTTCGCCATCAC
AGAGGCGCAGAGGTACCGCGGTCACTGGCAGAAGACGTGGCGAGTACCTA
GTACCGCCTTCAGGTCAGCCAATCTTGGTTTCGCATTCAGCGGCTACTCC
AATGTACGAACCGCGCTTTCCGAGAGCAGAACCGTGTACAGGAACCTTGA
AGGTTCGAAGATCATCACCATTGGTGGTGGTAATTACAATGGAGGCTGGA
CCCGTCGAACCATCCGAGACGTGAACCGCGCCATTCAGAAAGGATATTTT
AGGAACTATCGTGGAATTGCGTACGACATCGAGCAAGGTGATCCTGGTCT
CACGGGAATGTTTTTGTCTTCTTTCAAGCGTGCGAAGAGGGCTGGGTTAT
TCGTCATTGTTACTGTATCACATACAGCCCCATATGGCTTTACAGATGCC
ACTACGATTGTGAATGGGTTGCTGAGAAGTCGATACATTGACATTATCTC
GCCAATGATGTACAGCAGTGGGGCCATGAGGTTCCCTTCAGTTCTTGGTT
GGCGCGGTGACAGATTTCGTACTTATTTTGTAGGTGGGGCTTGTTGCGAA
GTGGTGTTGGCTCTGAATCCGCAAGGAACATTTCGCATCGGTCCCATGAC
GGCTGGTCAAGCTCTCAATACTTCCAAGCAGCTGAAGCGCCATTTCCCGA
CTATGTTCAAAGACAATTCAGACGTCATGGACGGACAATGA
back to top