Ggra3307.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3307.t1
Unique NameGgra3307.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:738476..740273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1142394.PSMK_25450
PFAMsUnbV_ASPIC,VCBS
Max annot lvl2|Bacteria
Evalue1.45e-30
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria
Descriptioncalcium- and calmodulin-responsive adenylate cyclase activity
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3307Ggra3307Gracilaria gracilis GNS1m malegenetig00000851_pilon 738476..740273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3307.t1Ggra3307.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 738476..740273 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3307.t1.stop1Ggra3307.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 738476..738478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3307.t1.CDS1Ggra3307.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 738476..739558 -
Ggra3307.t1.CDS2Ggra3307.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000851_pilon 739864..739895 -
Ggra3307.t1.CDS3Ggra3307.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000851_pilon 740186..740273 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3307.t1.exon1Ggra3307.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 738476..739558 -
Ggra3307.t1.exon2Ggra3307.t1.exon2Gracilaria gracilis GNS1m maleexontig00000851_pilon 739864..739895 -
Ggra3307.t1.exon3Ggra3307.t1.exon3Gracilaria gracilis GNS1m maleexontig00000851_pilon 740186..740273 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3307.t1.intron1Ggra3307.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000851_pilon 739559..739863 -
Ggra3307.t1.intron2Ggra3307.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000851_pilon 739896..740185 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3307.t1.start1Ggra3307.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 740271..740273 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3307.t1 ID=Ggra3307.t1|Name=Ggra3307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=401bp
MIALTRYRAARACSPSQLLAIVAPNFRFFVQAGIDLRSGKQAGITERGGR
GRTAVYLDLSMGAHPYWPDVIYTNAWAMEGIHQFAYESVGQQKFALRTLQ
GGFEWTRNPLAVVTDMENDGVMEVLSYYFFTVWKLVAPFHMVDVSDRVLP
PNMARDGVVSVTEIDFDGDGDFDLYLARDRIGFWMPDTVYHDILLENRDG
RYFDVSEQAGIPRGTKSRGVTTGDFNNDGLMDLHVSQYMGDDIVLLNNGN
GSFRRADGLTSHAKDTRGDMATAVDYDMDGKVDLIMSEGDHDDVSIGGTY
RVFNNVMASAGNYVHVRVGNPSDRSCTPLNAVVTVKSGDLSMMRRVGSPG
TSVSHSYMETLHFGLGDRAMVDSITVRYTNGKVETVENVQPGQTVVVGLL
*
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spliced messenger RNA

>Ggra3307.t1 ID=Ggra3307.t1|Name=Ggra3307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000851_pilon:738476..740273- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGCTCTTACGAGATACAGAGCCGCTCGCGCTTGTTCGCCTTCGCA
GCTCCTCGCCATCGTGGCGCCCAATTTTCGCTTTTTCGTGCAAGCTGGAA
TCGATCTCCGCTCCGGAAAGCAAGCCGGTATCACCGAACGCGGAGGTCGC
GGCAGGACGGCCGTGTACTTGGACCTCTCCATGGGCGCGCACCCGTACTG
GCCTGATGTGATCTACACCAACGCCTGGGCTATGGAAGGCATCCACCAAT
TCGCGTACGAAAGCGTTGGCCAACAAAAGTTCGCGCTTCGCACGTTGCAA
GGCGGATTCGAATGGACTAGAAACCCGCTCGCCGTGGTCACCGACATGGA
GAACGACGGTGTCATGGAGGTATTGAGCTATTACTTCTTCACGGTTTGGA
AGCTGGTGGCGCCGTTCCACATGGTGGACGTGTCCGACAGAGTGCTGCCG
CCCAACATGGCGCGCGATGGTGTGGTGTCAGTTACCGAGATTGACTTTGA
CGGCGATGGCGACTTCGACCTGTACCTCGCCAGGGACCGAATCGGCTTCT
GGATGCCCGACACCGTGTACCACGACATCCTGCTGGAGAACCGCGACGGT
CGCTACTTCGACGTGAGCGAGCAGGCCGGTATCCCTCGGGGCACCAAGTC
GCGCGGAGTGACCACCGGAGACTTCAACAACGACGGGCTGATGGATCTGC
ACGTGTCGCAGTACATGGGCGACGACATTGTGCTGCTCAACAACGGGAAT
GGATCCTTCCGACGCGCGGACGGACTCACCTCACACGCCAAAGACACCCG
TGGTGACATGGCAACGGCGGTTGACTACGACATGGACGGCAAGGTGGACC
TGATCATGAGCGAGGGTGACCACGACGATGTGTCAATTGGAGGTACTTAT
CGCGTGTTCAACAACGTGATGGCCAGCGCCGGCAACTACGTGCACGTGCG
CGTGGGAAACCCGTCTGATCGAAGCTGCACGCCGCTCAACGCGGTGGTGA
CGGTCAAGTCTGGTGACCTGAGCATGATGCGTCGCGTGGGATCTCCGGGT
ACCTCTGTGTCGCACTCTTATATGGAGACTTTGCACTTTGGTCTCGGCGA
CCGTGCCATGGTGGATTCTATCACAGTGCGATACACGAACGGGAAGGTTG
AGACGGTTGAAAACGTCCAACCTGGACAGACTGTTGTTGTTGGTTTGTTG
TAA
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protein sequence of Ggra3307.t1

>Ggra3307.t1 ID=Ggra3307.t1|Name=Ggra3307.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
MIALTRYRAARACSPSQLLAIVAPNFRFFVQAGIDLRSGKQAGITERGGR
GRTAVYLDLSMGAHPYWPDVIYTNAWAMEGIHQFAYESVGQQKFALRTLQ
GGFEWTRNPLAVVTDMENDGVMEVLSYYFFTVWKLVAPFHMVDVSDRVLP
PNMARDGVVSVTEIDFDGDGDFDLYLARDRIGFWMPDTVYHDILLENRDG
RYFDVSEQAGIPRGTKSRGVTTGDFNNDGLMDLHVSQYMGDDIVLLNNGN
GSFRRADGLTSHAKDTRGDMATAVDYDMDGKVDLIMSEGDHDDVSIGGTY
RVFNNVMASAGNYVHVRVGNPSDRSCTPLNAVVTVKSGDLSMMRRVGSPG
TSVSHSYMETLHFGLGDRAMVDSITVRYTNGKVETVENVQPGQTVVVGLL
*
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mRNA from alignment at tig00000851_pilon:738476..740273-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3307.t1 ID=Ggra3307.t1|Name=Ggra3307.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1798bp|location=Sequence derived from alignment at tig00000851_pilon:738476..740273- (Gracilaria gracilis GNS1m male)
ATGATAGCTCTTACGAGATACAGAGCCGCTCGCGCTTGTTCGCCTTCGCA
GCTCCTCGCCATCGTGGCGCCCAATTTTCGCTTTTTCGGTACGTCACCAT
GCGGTACGGATGCGTTGCTTTGGTAAGTGAGCCCGTCGTCTCGCTGACTA
TATAACATGGTCAATGTCCGCCAAGTTGCTCTCAAACATTCTCTCCACTC
CACTCCATCCCAACTCACAACATCCCCCCCACTAAATTCCCGAGTTTTTC
TAATCCCTAACTCACTTAACTCTAAAACTCATAACTCACCACAATGACTT
TGCGTAACTTTCTTCTATCAACTCTGCTTCTCTTCTCGGCTGCAATCGCC
GCCGACCCCGCCTTCCGCGACGTTACAGTGCAAGCTGGAATCGATCTCCG
CTCCGGAAAGGTCAAGAAGTATGGCGGCCCAGCCGTCATCGACCTCGATC
GCGATGGACTCCCAGATCTGCTCTTCTGCCATCACGACTCCACCTTCACC
GAGATGTACTTCAACAACGGCGACGGCTCCTTCTCCAAGCCGCAGTGGGG
CATCTTCCACGACTCGCATGGCTTCTCCGCCTTCCCCATGTCGCCATGGC
ACAAGAACATGCGCTTCACGCTCTCCGTGGGCGGCAACTTCGGTCTCAAC
CCCCGCCCACCCCCTCATGTTCGAGGTCAACCCGTTCAATCGTTCCATCG
TTGAGGGTCACGCAGCAAGCCGGTATCACCGAACGCGGAGGTCGCGGCAG
GACGGCCGTGTACTTGGACCTCTCCATGGGCGCGCACCCGTACTGGCCTG
ATGTGATCTACACCAACGCCTGGGCTATGGAAGGCATCCACCAATTCGCG
TACGAAAGCGTTGGCCAACAAAAGTTCGCGCTTCGCACGTTGCAAGGCGG
ATTCGAATGGACTAGAAACCCGCTCGCCGTGGTCACCGACATGGAGAACG
ACGGTGTCATGGAGGTATTGAGCTATTACTTCTTCACGGTTTGGAAGCTG
GTGGCGCCGTTCCACATGGTGGACGTGTCCGACAGAGTGCTGCCGCCCAA
CATGGCGCGCGATGGTGTGGTGTCAGTTACCGAGATTGACTTTGACGGCG
ATGGCGACTTCGACCTGTACCTCGCCAGGGACCGAATCGGCTTCTGGATG
CCCGACACCGTGTACCACGACATCCTGCTGGAGAACCGCGACGGTCGCTA
CTTCGACGTGAGCGAGCAGGCCGGTATCCCTCGGGGCACCAAGTCGCGCG
GAGTGACCACCGGAGACTTCAACAACGACGGGCTGATGGATCTGCACGTG
TCGCAGTACATGGGCGACGACATTGTGCTGCTCAACAACGGGAATGGATC
CTTCCGACGCGCGGACGGACTCACCTCACACGCCAAAGACACCCGTGGTG
ACATGGCAACGGCGGTTGACTACGACATGGACGGCAAGGTGGACCTGATC
ATGAGCGAGGGTGACCACGACGATGTGTCAATTGGAGGTACTTATCGCGT
GTTCAACAACGTGATGGCCAGCGCCGGCAACTACGTGCACGTGCGCGTGG
GAAACCCGTCTGATCGAAGCTGCACGCCGCTCAACGCGGTGGTGACGGTC
AAGTCTGGTGACCTGAGCATGATGCGTCGCGTGGGATCTCCGGGTACCTC
TGTGTCGCACTCTTATATGGAGACTTTGCACTTTGGTCTCGGCGACCGTG
CCATGGTGGATTCTATCACAGTGCGATACACGAACGGGAAGGTTGAGACG
GTTGAAAACGTCCAACCTGGACAGACTGTTGTTGTTGGTTTGTTGTAA
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Coding sequence (CDS) from alignment at tig00000851_pilon:738476..740273-

>Ggra3307.t1 ID=Ggra3307.t1|Name=Ggra3307.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00000851_pilon:738476..740273- (Gracilaria gracilis GNS1m male)
ATGATAGCTCTTACGAGATACAGAGCCGCTCGCGCTTGTTCGCCTTCGCA
GCTCCTCGCCATCGTGGCGCCCAATTTTCGCTTTTTCGTGCAAGCTGGAA
TCGATCTCCGCTCCGGAAAGCAAGCCGGTATCACCGAACGCGGAGGTCGC
GGCAGGACGGCCGTGTACTTGGACCTCTCCATGGGCGCGCACCCGTACTG
GCCTGATGTGATCTACACCAACGCCTGGGCTATGGAAGGCATCCACCAAT
TCGCGTACGAAAGCGTTGGCCAACAAAAGTTCGCGCTTCGCACGTTGCAA
GGCGGATTCGAATGGACTAGAAACCCGCTCGCCGTGGTCACCGACATGGA
GAACGACGGTGTCATGGAGGTATTGAGCTATTACTTCTTCACGGTTTGGA
AGCTGGTGGCGCCGTTCCACATGGTGGACGTGTCCGACAGAGTGCTGCCG
CCCAACATGGCGCGCGATGGTGTGGTGTCAGTTACCGAGATTGACTTTGA
CGGCGATGGCGACTTCGACCTGTACCTCGCCAGGGACCGAATCGGCTTCT
GGATGCCCGACACCGTGTACCACGACATCCTGCTGGAGAACCGCGACGGT
CGCTACTTCGACGTGAGCGAGCAGGCCGGTATCCCTCGGGGCACCAAGTC
GCGCGGAGTGACCACCGGAGACTTCAACAACGACGGGCTGATGGATCTGC
ACGTGTCGCAGTACATGGGCGACGACATTGTGCTGCTCAACAACGGGAAT
GGATCCTTCCGACGCGCGGACGGACTCACCTCACACGCCAAAGACACCCG
TGGTGACATGGCAACGGCGGTTGACTACGACATGGACGGCAAGGTGGACC
TGATCATGAGCGAGGGTGACCACGACGATGTGTCAATTGGAGGTACTTAT
CGCGTGTTCAACAACGTGATGGCCAGCGCCGGCAACTACGTGCACGTGCG
CGTGGGAAACCCGTCTGATCGAAGCTGCACGCCGCTCAACGCGGTGGTGA
CGGTCAAGTCTGGTGACCTGAGCATGATGCGTCGCGTGGGATCTCCGGGT
ACCTCTGTGTCGCACTCTTATATGGAGACTTTGCACTTTGGTCTCGGCGA
CCGTGCCATGGTGGATTCTATCACAGTGCGATACACGAACGGGAAGGTTG
AGACGGTTGAAAACGTCCAACCTGGACAGACTGTTGTTGTTGGTTTGTTG
TAA
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