Ggra3305.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3305.t1
Unique Name	Ggra3305.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	515

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000851_pilon	contig	tig00000851_pilon:637749..639293 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3305	Ggra3305	Gracilaria gracilis GNS1m male	gene	tig00000851_pilon 637749..639293 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3305.t1.stop1	Ggra3305.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000851_pilon 637749..637751 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3305.t1.CDS1	Ggra3305.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000851_pilon 637749..639293 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3305.t1.exon1	Ggra3305.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000851_pilon 637749..639293 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3305.t1.start1	Ggra3305.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000851_pilon 639291..639293 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3305.t1	Ggra3305.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000851_pilon 637749..639293 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000851_pilon:637749..639293-
coding sequence from alignment at tig00000851_pilon:637749..639293-

mRNA sequence

>Ggra3305.t1 ID=Ggra3305.t1|Name=Ggra3305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=515bp
MNVSFILLSLLLAQVYAISKLHVGPSGSRISTLKAFSIISANELYEAHAA
SGTRSTEREALLVEYRIELKKDVLVFDDLEEDGAWISSCSRDASVREAFI
EMRGSNLDTSDFRPGVAFIINPDDWERHCGRVALVNGVDEENGPLFYEIR
NARANGQSVSMDMIVVPGKDVVPSIEFSFMKKPRSLTSLPSGIVYGDSPA
FTAVSSMAGASFSARMLDLNNSLITVERPSFSRSDSKTLFSGAVLDYDIF
LSANARKLKLRTGPLRVEWEQSLRADIDVTLSVTKKAKTSKRGDLVRGAI
SGFGICKKVLGFKICVGAFWKLEWVFDGEIDVKNLKVMVDVQHHTEQRMS
LSLKKGLTATNLLGPGAGRSGRVTFDFPPTTNAAVGVTAFVGVRPAVGLA
GTLGKAGHEGNIGAKLGLEASTKLKKNPPHAPFTGSGLKLGKCNKCHVVR
GDVKVRGKELSLQYLKNGSLKKDVVLIHRLFDIGLGTVCAVPATCPSPIG
GVIGAAGATGFASI*

spliced messenger RNA

>Ggra3305.t1 ID=Ggra3305.t1|Name=Ggra3305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000851_pilon:637749..639293- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTTTCATTTATTCTTCTGTCCTTGCTCCTGGCCCAGGTGTATGC
CATTTCCAAACTTCATGTTGGGCCATCCGGGAGCCGCATTTCAACTCTCA
AGGCGTTTTCTATCATTAGCGCAAATGAACTCTATGAAGCACACGCCGCC
AGTGGCACACGGAGTACCGAAAGGGAAGCTCTTTTGGTGGAATATCGTAT
TGAGCTCAAGAAAGATGTCCTAGTTTTCGACGATCTCGAAGAAGACGGTG
CTTGGATCTCTTCGTGTTCACGAGATGCTAGTGTCCGTGAGGCTTTCATT
GAGATGAGAGGGTCAAATCTTGATACTTCTGACTTTCGACCCGGTGTTGC
TTTCATCATCAATCCTGATGATTGGGAGAGACATTGTGGCCGGGTAGCAC
TGGTAAATGGCGTTGATGAAGAAAATGGCCCACTGTTCTATGAGATTAGA
AATGCGAGGGCGAACGGACAGTCAGTTTCGATGGACATGATAGTCGTTCC
TGGCAAAGATGTGGTTCCAAGCATAGAATTCTCTTTCATGAAAAAGCCCA
GATCGCTTACTTCCCTTCCATCAGGGATTGTGTATGGCGACAGCCCTGCC
TTCACCGCAGTGTCATCCATGGCTGGGGCCTCCTTCTCTGCTCGAATGTT
GGATCTGAACAACTCTCTTATCACTGTAGAACGCCCGTCTTTTTCTCGCA
GTGATTCAAAGACCTTGTTCTCAGGAGCTGTGTTAGATTACGATATTTTT
CTGTCAGCCAACGCAAGGAAGCTTAAACTTCGAACTGGGCCCCTAAGAGT
GGAATGGGAGCAAAGTCTCCGAGCCGATATCGATGTCACGCTCTCTGTTA
CGAAAAAAGCAAAAACATCAAAACGGGGTGATCTAGTACGAGGTGCAATC
AGTGGTTTCGGCATTTGTAAGAAGGTCCTTGGGTTCAAAATCTGTGTAGG
TGCTTTCTGGAAGTTGGAATGGGTTTTCGATGGAGAAATTGATGTTAAGA
ATCTGAAGGTGATGGTAGATGTGCAACATCATACGGAGCAACGGATGAGC
TTATCACTTAAGAAAGGGTTGACAGCCACCAACTTGCTGGGTCCTGGCGC
TGGACGTTCTGGTAGGGTTACGTTTGACTTTCCTCCCACCACGAATGCCG
CCGTGGGTGTTACAGCTTTCGTCGGAGTTCGACCTGCCGTAGGACTCGCA
GGAACGCTCGGAAAAGCAGGACATGAAGGAAACATTGGAGCCAAATTAGG
TTTAGAAGCGTCGACGAAGTTGAAGAAGAACCCGCCGCATGCACCATTTA
CCGGCAGCGGCCTCAAGCTTGGAAAATGTAACAAGTGTCACGTAGTGCGG
GGAGATGTAAAGGTTCGGGGCAAAGAGCTTTCGTTGCAGTATTTGAAGAA
TGGAAGTCTCAAGAAAGACGTAGTGCTGATTCATCGATTGTTTGACATTG
GTTTGGGCACGGTTTGTGCCGTGCCTGCTACATGCCCGTCACCAATCGGG
GGTGTGATCGGTGCAGCAGGAGCTACAGGGTTTGCGTCAATTTGA

protein sequence of Ggra3305.t1

>Ggra3305.t1 ID=Ggra3305.t1|Name=Ggra3305.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=515bp
MNVSFILLSLLLAQVYAISKLHVGPSGSRISTLKAFSIISANELYEAHAA
SGTRSTEREALLVEYRIELKKDVLVFDDLEEDGAWISSCSRDASVREAFI
EMRGSNLDTSDFRPGVAFIINPDDWERHCGRVALVNGVDEENGPLFYEIR
NARANGQSVSMDMIVVPGKDVVPSIEFSFMKKPRSLTSLPSGIVYGDSPA
FTAVSSMAGASFSARMLDLNNSLITVERPSFSRSDSKTLFSGAVLDYDIF
LSANARKLKLRTGPLRVEWEQSLRADIDVTLSVTKKAKTSKRGDLVRGAI
SGFGICKKVLGFKICVGAFWKLEWVFDGEIDVKNLKVMVDVQHHTEQRMS
LSLKKGLTATNLLGPGAGRSGRVTFDFPPTTNAAVGVTAFVGVRPAVGLA
GTLGKAGHEGNIGAKLGLEASTKLKKNPPHAPFTGSGLKLGKCNKCHVVR
GDVKVRGKELSLQYLKNGSLKKDVVLIHRLFDIGLGTVCAVPATCPSPIG
GVIGAAGATGFASI*

mRNA from alignment at tig00000851_pilon:637749..639293-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3305.t1 ID=Ggra3305.t1|Name=Ggra3305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000851_pilon:637749..639293- (Gracilaria gracilis GNS1m male)
ATGAATGTTTCATTTATTCTTCTGTCCTTGCTCCTGGCCCAGGTGTATGC
CATTTCCAAACTTCATGTTGGGCCATCCGGGAGCCGCATTTCAACTCTCA
AGGCGTTTTCTATCATTAGCGCAAATGAACTCTATGAAGCACACGCCGCC
AGTGGCACACGGAGTACCGAAAGGGAAGCTCTTTTGGTGGAATATCGTAT
TGAGCTCAAGAAAGATGTCCTAGTTTTCGACGATCTCGAAGAAGACGGTG
CTTGGATCTCTTCGTGTTCACGAGATGCTAGTGTCCGTGAGGCTTTCATT
GAGATGAGAGGGTCAAATCTTGATACTTCTGACTTTCGACCCGGTGTTGC
TTTCATCATCAATCCTGATGATTGGGAGAGACATTGTGGCCGGGTAGCAC
TGGTAAATGGCGTTGATGAAGAAAATGGCCCACTGTTCTATGAGATTAGA
AATGCGAGGGCGAACGGACAGTCAGTTTCGATGGACATGATAGTCGTTCC
TGGCAAAGATGTGGTTCCAAGCATAGAATTCTCTTTCATGAAAAAGCCCA
GATCGCTTACTTCCCTTCCATCAGGGATTGTGTATGGCGACAGCCCTGCC
TTCACCGCAGTGTCATCCATGGCTGGGGCCTCCTTCTCTGCTCGAATGTT
GGATCTGAACAACTCTCTTATCACTGTAGAACGCCCGTCTTTTTCTCGCA
GTGATTCAAAGACCTTGTTCTCAGGAGCTGTGTTAGATTACGATATTTTT
CTGTCAGCCAACGCAAGGAAGCTTAAACTTCGAACTGGGCCCCTAAGAGT
GGAATGGGAGCAAAGTCTCCGAGCCGATATCGATGTCACGCTCTCTGTTA
CGAAAAAAGCAAAAACATCAAAACGGGGTGATCTAGTACGAGGTGCAATC
AGTGGTTTCGGCATTTGTAAGAAGGTCCTTGGGTTCAAAATCTGTGTAGG
TGCTTTCTGGAAGTTGGAATGGGTTTTCGATGGAGAAATTGATGTTAAGA
ATCTGAAGGTGATGGTAGATGTGCAACATCATACGGAGCAACGGATGAGC
TTATCACTTAAGAAAGGGTTGACAGCCACCAACTTGCTGGGTCCTGGCGC
TGGACGTTCTGGTAGGGTTACGTTTGACTTTCCTCCCACCACGAATGCCG
CCGTGGGTGTTACAGCTTTCGTCGGAGTTCGACCTGCCGTAGGACTCGCA
GGAACGCTCGGAAAAGCAGGACATGAAGGAAACATTGGAGCCAAATTAGG
TTTAGAAGCGTCGACGAAGTTGAAGAAGAACCCGCCGCATGCACCATTTA
CCGGCAGCGGCCTCAAGCTTGGAAAATGTAACAAGTGTCACGTAGTGCGG
GGAGATGTAAAGGTTCGGGGCAAAGAGCTTTCGTTGCAGTATTTGAAGAA
TGGAAGTCTCAAGAAAGACGTAGTGCTGATTCATCGATTGTTTGACATTG
GTTTGGGCACGGTTTGTGCCGTGCCTGCTACATGCCCGTCACCAATCGGG
GGTGTGATCGGTGCAGCAGGAGCTACAGGGTTTGCGTCAATTTGA

Coding sequence (CDS) from alignment at tig00000851_pilon:637749..639293-

>Ggra3305.t1 ID=Ggra3305.t1|Name=Ggra3305.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1545bp|location=Sequence derived from alignment at tig00000851_pilon:637749..639293- (Gracilaria gracilis GNS1m male)
ATGAATGTTTCATTTATTCTTCTGTCCTTGCTCCTGGCCCAGGTGTATGC
CATTTCCAAACTTCATGTTGGGCCATCCGGGAGCCGCATTTCAACTCTCA
AGGCGTTTTCTATCATTAGCGCAAATGAACTCTATGAAGCACACGCCGCC
AGTGGCACACGGAGTACCGAAAGGGAAGCTCTTTTGGTGGAATATCGTAT
TGAGCTCAAGAAAGATGTCCTAGTTTTCGACGATCTCGAAGAAGACGGTG
CTTGGATCTCTTCGTGTTCACGAGATGCTAGTGTCCGTGAGGCTTTCATT
GAGATGAGAGGGTCAAATCTTGATACTTCTGACTTTCGACCCGGTGTTGC
TTTCATCATCAATCCTGATGATTGGGAGAGACATTGTGGCCGGGTAGCAC
TGGTAAATGGCGTTGATGAAGAAAATGGCCCACTGTTCTATGAGATTAGA
AATGCGAGGGCGAACGGACAGTCAGTTTCGATGGACATGATAGTCGTTCC
TGGCAAAGATGTGGTTCCAAGCATAGAATTCTCTTTCATGAAAAAGCCCA
GATCGCTTACTTCCCTTCCATCAGGGATTGTGTATGGCGACAGCCCTGCC
TTCACCGCAGTGTCATCCATGGCTGGGGCCTCCTTCTCTGCTCGAATGTT
GGATCTGAACAACTCTCTTATCACTGTAGAACGCCCGTCTTTTTCTCGCA
GTGATTCAAAGACCTTGTTCTCAGGAGCTGTGTTAGATTACGATATTTTT
CTGTCAGCCAACGCAAGGAAGCTTAAACTTCGAACTGGGCCCCTAAGAGT
GGAATGGGAGCAAAGTCTCCGAGCCGATATCGATGTCACGCTCTCTGTTA
CGAAAAAAGCAAAAACATCAAAACGGGGTGATCTAGTACGAGGTGCAATC
AGTGGTTTCGGCATTTGTAAGAAGGTCCTTGGGTTCAAAATCTGTGTAGG
TGCTTTCTGGAAGTTGGAATGGGTTTTCGATGGAGAAATTGATGTTAAGA
ATCTGAAGGTGATGGTAGATGTGCAACATCATACGGAGCAACGGATGAGC
TTATCACTTAAGAAAGGGTTGACAGCCACCAACTTGCTGGGTCCTGGCGC
TGGACGTTCTGGTAGGGTTACGTTTGACTTTCCTCCCACCACGAATGCCG
CCGTGGGTGTTACAGCTTTCGTCGGAGTTCGACCTGCCGTAGGACTCGCA
GGAACGCTCGGAAAAGCAGGACATGAAGGAAACATTGGAGCCAAATTAGG
TTTAGAAGCGTCGACGAAGTTGAAGAAGAACCCGCCGCATGCACCATTTA
CCGGCAGCGGCCTCAAGCTTGGAAAATGTAACAAGTGTCACGTAGTGCGG
GGAGATGTAAAGGTTCGGGGCAAAGAGCTTTCGTTGCAGTATTTGAAGAA
TGGAAGTCTCAAGAAAGACGTAGTGCTGATTCATCGATTGTTTGACATTG
GTTTGGGCACGGTTTGTGCCGTGCCTGCTACATGCCCGTCACCAATCGGG
GGTGTGATCGGTGCAGCAGGAGCTACAGGGTTTGCGTCAATTTGA