Ggra3295.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3295.t1
Unique NameGgra3295.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length630
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:538873..540834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3295Ggra3295Gracilaria gracilis GNS1m malegenetig00000851_pilon 538873..540834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3295.t1Ggra3295.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 538873..540834 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3295.t1.stop1Ggra3295.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 538873..538875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3295.t1.CDS1Ggra3295.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 538873..540036 -
Ggra3295.t1.CDS2Ggra3295.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000851_pilon 540109..540834 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3295.t1.exon1Ggra3295.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 538873..540036 -
Ggra3295.t1.exon2Ggra3295.t1.exon2Gracilaria gracilis GNS1m maleexontig00000851_pilon 540109..540834 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3295.t1.intron1Ggra3295.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000851_pilon 540037..540108 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3295.t1.start1Ggra3295.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 540832..540834 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3295.t1 ID=Ggra3295.t1|Name=Ggra3295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp
MKGGYEVNEPNDTTKACDGGKKIMSEDIPQQSPASKEKYRDTGGCNSSDL
PLTEELVDEKKKPSSSENIREQGLDIHQSHGSEPTQKSIPIDTERSPAER
GHASGHVDTGVRSNSNKSKKPSISSEKHRSPEQSSDVEENKGLCSQKEPS
EKLGPDPTSLSKVTLPDVTLSPPWKDEEGGAKSQRRTPAFSDARPESEGN
NIMDKKPEAWSAKPPELDDKEVQDTAKDPDIAMGHHTHSVQRAPKKLPNT
DDHEFQNSDQVVTTESKEVSSAHMVLIRAPQAPQQEDQCWEKYMNEMDTS
FEQEAPTQPPSQAEPKKIVTRELFSGWKRAPVERRDEAMQISDVIDLDAE
SDGNDNEEEEKSRNYNSDSNENSADEGQHPKTAPAPDDDDDDDDDEHQTP
RRDENNVNKVPDTDEDNDEDEDDDPSSDTPHNLVRNYACEYISEGEGPQP
MDVTFSEQEGVERQGVHLPNQKEVTPSIKKSARDIEKFEGHGKSKGSLVD
GQALLSRRDMDGREDREESMVIDLQKDSRMEEDEEAEEKLEYCDNFAKLD
DVPVVVQGEAISVTEKGKIDSLSREKSEESDVLIIPGSSESDDRENIAPQ
VVQRLPLLETEQGPEASSNEFEDEEIPVI*
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spliced messenger RNA

>Ggra3295.t1 ID=Ggra3295.t1|Name=Ggra3295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00000851_pilon:538873..540834- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGGCGGCTATGAGGTTAACGAGCCCAATGATACCACTAAAGCCTG
TGATGGTGGAAAGAAAATCATGTCAGAAGATATTCCACAGCAATCACCGG
CATCTAAAGAAAAGTATCGTGACACAGGGGGCTGTAATTCTTCAGATTTA
CCATTAACTGAAGAATTGGTAGATGAGAAGAAGAAGCCTTCCTCTTCTGA
AAACATCCGGGAGCAAGGTCTAGACATTCACCAAAGTCACGGTAGCGAAC
CCACGCAGAAAAGCATCCCAATAGACACAGAGCGTAGTCCCGCTGAGCGA
GGCCATGCAAGTGGACATGTAGACACTGGTGTGCGGTCAAATTCCAACAA
GAGTAAGAAACCCTCAATAAGCAGTGAAAAACATCGATCTCCAGAACAAA
GTTCCGATGTGGAAGAAAATAAGGGTTTATGCTCCCAAAAGGAACCATCT
GAAAAATTGGGACCAGACCCTACATCACTGTCTAAGGTAACCCTACCAGA
TGTCACCCTATCCCCGCCTTGGAAAGATGAGGAAGGAGGAGCAAAATCTC
AGCGCAGAACTCCAGCCTTCTCAGACGCCCGACCCGAGAGTGAAGGGAAC
AACATAATGGACAAGAAACCAGAAGCATGGAGCGCAAAACCTCCAGAATT
AGACGATAAAGAAGTGCAAGATACAGCGAAGGATCCGGACATAGCAATGG
GTCATCATACCCACTCTGTTCAAAGAGCACCAAAAAAGCTTCCGAATACC
GATGATCACGAATTTCAAAACAGTGATCAAGTTGTGACAACGGAATCCAA
GGAAGTTTCGTCAGCACATATGGTATTAATTCGGGCACCACAAGCTCCCC
AACAAGAAGACCAATGCTGGGAGAAATATATGAATGAAATGGACACATCT
TTTGAGCAGGAAGCTCCTACACAACCTCCTTCACAGGCCGAGCCCAAGAA
AATTGTAACGCGAGAGCTATTTTCAGGATGGAAACGAGCCCCAGTTGAAA
GAAGAGACGAAGCTATGCAGATCTCGGATGTTATCGATCTGGACGCAGAA
TCTGATGGAAACGACAACGAAGAAGAAGAAAAATCTAGAAATTATAATAG
TGACAGTAACGAGAACTCAGCTGATGAAGGCCAACATCCTAAAACTGCTC
CAGCCCCGGATGATGATGATGATGACGATGATGATGAACACCAAACTCCA
CGCCGCGATGAAAATAACGTTAACAAGGTTCCAGATACAGATGAAGATAA
CGACGAAGATGAAGATGACGATCCAAGCAGTGATACTCCCCACAATTTAG
TTCGAAACTACGCATGTGAATATATATCAGAAGGTGAAGGACCACAGCCG
ATGGATGTCACCTTCAGTGAACAAGAAGGGGTAGAACGTCAAGGAGTGCA
TCTCCCAAACCAAAAAGAAGTCACTCCATCAATCAAGAAAAGCGCTCGTG
ATATTGAGAAGTTTGAAGGTCATGGGAAGTCTAAAGGTTCTCTGGTGGAC
GGGCAGGCGCTTTTATCTCGGAGAGATATGGACGGCCGAGAGGACAGAGA
AGAAAGCATGGTTATAGATCTTCAAAAGGATTCAAGAATGGAAGAAGACG
AAGAAGCTGAGGAGAAACTTGAGTATTGTGACAATTTTGCGAAGCTGGAT
GACGTTCCAGTGGTTGTTCAAGGGGAAGCAATCTCAGTAACAGAAAAAGG
AAAAATTGATTCCCTTTCGAGAGAGAAAAGCGAAGAATCTGACGTCCTAA
TCATACCAGGTTCCTCTGAAAGTGATGATAGAGAGAACATAGCACCCCAA
GTAGTTCAACGCCTACCTCTCTTAGAGACCGAGCAGGGGCCAGAAGCTTC
ATCCAATGAGTTTGAGGACGAGGAAATACCGGTTATTTGA
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protein sequence of Ggra3295.t1

>Ggra3295.t1 ID=Ggra3295.t1|Name=Ggra3295.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=630bp
MKGGYEVNEPNDTTKACDGGKKIMSEDIPQQSPASKEKYRDTGGCNSSDL
PLTEELVDEKKKPSSSENIREQGLDIHQSHGSEPTQKSIPIDTERSPAER
GHASGHVDTGVRSNSNKSKKPSISSEKHRSPEQSSDVEENKGLCSQKEPS
EKLGPDPTSLSKVTLPDVTLSPPWKDEEGGAKSQRRTPAFSDARPESEGN
NIMDKKPEAWSAKPPELDDKEVQDTAKDPDIAMGHHTHSVQRAPKKLPNT
DDHEFQNSDQVVTTESKEVSSAHMVLIRAPQAPQQEDQCWEKYMNEMDTS
FEQEAPTQPPSQAEPKKIVTRELFSGWKRAPVERRDEAMQISDVIDLDAE
SDGNDNEEEEKSRNYNSDSNENSADEGQHPKTAPAPDDDDDDDDDEHQTP
RRDENNVNKVPDTDEDNDEDEDDDPSSDTPHNLVRNYACEYISEGEGPQP
MDVTFSEQEGVERQGVHLPNQKEVTPSIKKSARDIEKFEGHGKSKGSLVD
GQALLSRRDMDGREDREESMVIDLQKDSRMEEDEEAEEKLEYCDNFAKLD
DVPVVVQGEAISVTEKGKIDSLSREKSEESDVLIIPGSSESDDRENIAPQ
VVQRLPLLETEQGPEASSNEFEDEEIPVI*
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mRNA from alignment at tig00000851_pilon:538873..540834-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3295.t1 ID=Ggra3295.t1|Name=Ggra3295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1962bp|location=Sequence derived from alignment at tig00000851_pilon:538873..540834- (Gracilaria gracilis GNS1m male)
ATGAAAGGCGGCTATGAGGTTAACGAGCCCAATGATACCACTAAAGCCTG
TGATGGTGGAAAGAAAATCATGTCAGAAGATATTCCACAGCAATCACCGG
CATCTAAAGAAAAGTATCGTGACACAGGGGGCTGTAATTCTTCAGATTTA
CCATTAACTGAAGAATTGGTAGATGAGAAGAAGAAGCCTTCCTCTTCTGA
AAACATCCGGGAGCAAGGTCTAGACATTCACCAAAGTCACGGTAGCGAAC
CCACGCAGAAAAGCATCCCAATAGACACAGAGCGTAGTCCCGCTGAGCGA
GGCCATGCAAGTGGACATGTAGACACTGGTGTGCGGTCAAATTCCAACAA
GAGTAAGAAACCCTCAATAAGCAGTGAAAAACATCGATCTCCAGAACAAA
GTTCCGATGTGGAAGAAAATAAGGGTTTATGCTCCCAAAAGGAACCATCT
GAAAAATTGGGACCAGACCCTACATCACTGTCTAAGGTAACCCTACCAGA
TGTCACCCTATCCCCGCCTTGGAAAGATGAGGAAGGAGGAGCAAAATCTC
AGCGCAGAACTCCAGCCTTCTCAGACGCCCGACCCGAGAGTGAAGGGAAC
AACATAATGGACAAGAAACCAGAAGCATGGAGCGCAAAACCTCCAGAATT
AGACGATAAAGAAGTGCAAGATACAGCGAAGGATCCGGACATAGCAATGG
GTCATCATACCCACTCTGTTCAAAGAGTGTGCCAACGGAACAATAAGGTT
GGTGCGATCCAGTTCAAACCTGCCAAAGAGCATACAATACCTCTCTAGGC
ACCAAAAAAGCTTCCGAATACCGATGATCACGAATTTCAAAACAGTGATC
AAGTTGTGACAACGGAATCCAAGGAAGTTTCGTCAGCACATATGGTATTA
ATTCGGGCACCACAAGCTCCCCAACAAGAAGACCAATGCTGGGAGAAATA
TATGAATGAAATGGACACATCTTTTGAGCAGGAAGCTCCTACACAACCTC
CTTCACAGGCCGAGCCCAAGAAAATTGTAACGCGAGAGCTATTTTCAGGA
TGGAAACGAGCCCCAGTTGAAAGAAGAGACGAAGCTATGCAGATCTCGGA
TGTTATCGATCTGGACGCAGAATCTGATGGAAACGACAACGAAGAAGAAG
AAAAATCTAGAAATTATAATAGTGACAGTAACGAGAACTCAGCTGATGAA
GGCCAACATCCTAAAACTGCTCCAGCCCCGGATGATGATGATGATGACGA
TGATGATGAACACCAAACTCCACGCCGCGATGAAAATAACGTTAACAAGG
TTCCAGATACAGATGAAGATAACGACGAAGATGAAGATGACGATCCAAGC
AGTGATACTCCCCACAATTTAGTTCGAAACTACGCATGTGAATATATATC
AGAAGGTGAAGGACCACAGCCGATGGATGTCACCTTCAGTGAACAAGAAG
GGGTAGAACGTCAAGGAGTGCATCTCCCAAACCAAAAAGAAGTCACTCCA
TCAATCAAGAAAAGCGCTCGTGATATTGAGAAGTTTGAAGGTCATGGGAA
GTCTAAAGGTTCTCTGGTGGACGGGCAGGCGCTTTTATCTCGGAGAGATA
TGGACGGCCGAGAGGACAGAGAAGAAAGCATGGTTATAGATCTTCAAAAG
GATTCAAGAATGGAAGAAGACGAAGAAGCTGAGGAGAAACTTGAGTATTG
TGACAATTTTGCGAAGCTGGATGACGTTCCAGTGGTTGTTCAAGGGGAAG
CAATCTCAGTAACAGAAAAAGGAAAAATTGATTCCCTTTCGAGAGAGAAA
AGCGAAGAATCTGACGTCCTAATCATACCAGGTTCCTCTGAAAGTGATGA
TAGAGAGAACATAGCACCCCAAGTAGTTCAACGCCTACCTCTCTTAGAGA
CCGAGCAGGGGCCAGAAGCTTCATCCAATGAGTTTGAGGACGAGGAAATA
CCGGTTATTTGA
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Coding sequence (CDS) from alignment at tig00000851_pilon:538873..540834-

>Ggra3295.t1 ID=Ggra3295.t1|Name=Ggra3295.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1890bp|location=Sequence derived from alignment at tig00000851_pilon:538873..540834- (Gracilaria gracilis GNS1m male)
ATGAAAGGCGGCTATGAGGTTAACGAGCCCAATGATACCACTAAAGCCTG
TGATGGTGGAAAGAAAATCATGTCAGAAGATATTCCACAGCAATCACCGG
CATCTAAAGAAAAGTATCGTGACACAGGGGGCTGTAATTCTTCAGATTTA
CCATTAACTGAAGAATTGGTAGATGAGAAGAAGAAGCCTTCCTCTTCTGA
AAACATCCGGGAGCAAGGTCTAGACATTCACCAAAGTCACGGTAGCGAAC
CCACGCAGAAAAGCATCCCAATAGACACAGAGCGTAGTCCCGCTGAGCGA
GGCCATGCAAGTGGACATGTAGACACTGGTGTGCGGTCAAATTCCAACAA
GAGTAAGAAACCCTCAATAAGCAGTGAAAAACATCGATCTCCAGAACAAA
GTTCCGATGTGGAAGAAAATAAGGGTTTATGCTCCCAAAAGGAACCATCT
GAAAAATTGGGACCAGACCCTACATCACTGTCTAAGGTAACCCTACCAGA
TGTCACCCTATCCCCGCCTTGGAAAGATGAGGAAGGAGGAGCAAAATCTC
AGCGCAGAACTCCAGCCTTCTCAGACGCCCGACCCGAGAGTGAAGGGAAC
AACATAATGGACAAGAAACCAGAAGCATGGAGCGCAAAACCTCCAGAATT
AGACGATAAAGAAGTGCAAGATACAGCGAAGGATCCGGACATAGCAATGG
GTCATCATACCCACTCTGTTCAAAGAGCACCAAAAAAGCTTCCGAATACC
GATGATCACGAATTTCAAAACAGTGATCAAGTTGTGACAACGGAATCCAA
GGAAGTTTCGTCAGCACATATGGTATTAATTCGGGCACCACAAGCTCCCC
AACAAGAAGACCAATGCTGGGAGAAATATATGAATGAAATGGACACATCT
TTTGAGCAGGAAGCTCCTACACAACCTCCTTCACAGGCCGAGCCCAAGAA
AATTGTAACGCGAGAGCTATTTTCAGGATGGAAACGAGCCCCAGTTGAAA
GAAGAGACGAAGCTATGCAGATCTCGGATGTTATCGATCTGGACGCAGAA
TCTGATGGAAACGACAACGAAGAAGAAGAAAAATCTAGAAATTATAATAG
TGACAGTAACGAGAACTCAGCTGATGAAGGCCAACATCCTAAAACTGCTC
CAGCCCCGGATGATGATGATGATGACGATGATGATGAACACCAAACTCCA
CGCCGCGATGAAAATAACGTTAACAAGGTTCCAGATACAGATGAAGATAA
CGACGAAGATGAAGATGACGATCCAAGCAGTGATACTCCCCACAATTTAG
TTCGAAACTACGCATGTGAATATATATCAGAAGGTGAAGGACCACAGCCG
ATGGATGTCACCTTCAGTGAACAAGAAGGGGTAGAACGTCAAGGAGTGCA
TCTCCCAAACCAAAAAGAAGTCACTCCATCAATCAAGAAAAGCGCTCGTG
ATATTGAGAAGTTTGAAGGTCATGGGAAGTCTAAAGGTTCTCTGGTGGAC
GGGCAGGCGCTTTTATCTCGGAGAGATATGGACGGCCGAGAGGACAGAGA
AGAAAGCATGGTTATAGATCTTCAAAAGGATTCAAGAATGGAAGAAGACG
AAGAAGCTGAGGAGAAACTTGAGTATTGTGACAATTTTGCGAAGCTGGAT
GACGTTCCAGTGGTTGTTCAAGGGGAAGCAATCTCAGTAACAGAAAAAGG
AAAAATTGATTCCCTTTCGAGAGAGAAAAGCGAAGAATCTGACGTCCTAA
TCATACCAGGTTCCTCTGAAAGTGATGATAGAGAGAACATAGCACCCCAA
GTAGTTCAACGCCTACCTCTCTTAGAGACCGAGCAGGGGCCAGAAGCTTC
ATCCAATGAGTTTGAGGACGAGGAAATACCGGTTATTTGA
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