Ggra329.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra329.t1
Unique NameGgra329.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000209_piloncontigtig00000209_pilon:98663..99571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue8.7e-05
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra329Ggra329Gracilaria gracilis GNS1m malegenetig00000209_pilon 98663..99571 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra329.t1.stop1Ggra329.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000209_pilon 98663..98665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra329.t1.CDS1Ggra329.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000209_pilon 98663..99571 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra329.t1.exon1Ggra329.t1.exon1Gracilaria gracilis GNS1m maleexontig00000209_pilon 98663..99571 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra329.t1.start1Ggra329.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000209_pilon 99569..99571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra329.t1Ggra329.t1Gracilaria gracilis GNS1m malepolypeptidetig00000209_pilon 98663..99571 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra329.t1 ID=Ggra329.t1|Name=Ggra329.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MEMTNSERFFPKTFNWVKKRCAVSTIAIERNGYVQRTQGLPYFHVDKSRT
FMTFSEPWKCRGWFQGVQLWLKLELERKGFKMLTDVTILTISLDSVTFTC
TMGGSDQSDRICDTKTISDVLNFDHQRLFLKAFISAFREATITACLANRM
PEVALYVVAVRDKDCVLLQKDVGEMGKSDLRLDARIRTICFFQQHSRRYT
MELRKNRVPEFSTQWLMKNIKLILNNPILDDLLPADTLSVVRQSIPALQM
MFGHIISLGVADSLVHGDLHMGNLGALNSGPPQVYKVFDWGTAMIGCPFL
TQ*
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spliced messenger RNA

>Ggra329.t1 ID=Ggra329.t1|Name=Ggra329.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000209_pilon:98663..99571- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATGACTAACTCCGAGAGATTCTTTCCAAAGACGTTCAACTGGGT
AAAGAAACGTTGTGCTGTGTCTACCATAGCAATTGAAAGAAATGGATATG
TTCAGAGAACACAGGGACTACCGTACTTCCATGTTGACAAATCCCGCACT
TTTATGACCTTCTCAGAGCCGTGGAAGTGTAGGGGCTGGTTTCAGGGTGT
ACAATTATGGCTAAAACTTGAGTTGGAGAGGAAGGGCTTCAAGATGTTGA
CAGATGTGACGATTCTGACAATCTCATTGGACTCTGTCACATTCACATGT
ACTATGGGCGGGTCTGACCAGTCTGACCGGATTTGCGATACCAAAACCAT
CAGTGACGTACTTAATTTCGACCATCAAAGGTTGTTCTTGAAGGCATTTA
TCTCCGCTTTTCGCGAAGCTACAATCACGGCATGTCTTGCCAATAGAATG
CCCGAAGTAGCACTGTACGTAGTGGCTGTGAGAGACAAAGACTGTGTTCT
CTTGCAGAAAGACGTGGGAGAGATGGGGAAGTCCGATCTGAGACTTGATG
CGAGGATACGTACTATCTGTTTCTTTCAACAGCATTCTCGAAGGTATACA
ATGGAACTTCGTAAGAATAGGGTCCCAGAGTTCAGCACGCAATGGTTGAT
GAAAAACATCAAGCTTATACTGAACAACCCAATTCTTGATGACCTTCTTC
CTGCAGACACTTTGAGTGTGGTGCGGCAGAGCATTCCCGCATTGCAAATG
ATGTTCGGGCACATAATTTCTTTGGGGGTAGCTGATTCTCTGGTACATGG
CGATCTGCATATGGGAAATCTTGGGGCGTTGAATTCTGGTCCACCACAAG
TATACAAGGTTTTTGACTGGGGGACAGCCATGATCGGTTGCCCTTTTTTG
ACGCAGTGA
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protein sequence of Ggra329.t1

>Ggra329.t1 ID=Ggra329.t1|Name=Ggra329.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MEMTNSERFFPKTFNWVKKRCAVSTIAIERNGYVQRTQGLPYFHVDKSRT
FMTFSEPWKCRGWFQGVQLWLKLELERKGFKMLTDVTILTISLDSVTFTC
TMGGSDQSDRICDTKTISDVLNFDHQRLFLKAFISAFREATITACLANRM
PEVALYVVAVRDKDCVLLQKDVGEMGKSDLRLDARIRTICFFQQHSRRYT
MELRKNRVPEFSTQWLMKNIKLILNNPILDDLLPADTLSVVRQSIPALQM
MFGHIISLGVADSLVHGDLHMGNLGALNSGPPQVYKVFDWGTAMIGCPFL
TQ*
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mRNA from alignment at tig00000209_pilon:98663..99571-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra329.t1 ID=Ggra329.t1|Name=Ggra329.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000209_pilon:98663..99571- (Gracilaria gracilis GNS1m male)
ATGGAGATGACTAACTCCGAGAGATTCTTTCCAAAGACGTTCAACTGGGT
AAAGAAACGTTGTGCTGTGTCTACCATAGCAATTGAAAGAAATGGATATG
TTCAGAGAACACAGGGACTACCGTACTTCCATGTTGACAAATCCCGCACT
TTTATGACCTTCTCAGAGCCGTGGAAGTGTAGGGGCTGGTTTCAGGGTGT
ACAATTATGGCTAAAACTTGAGTTGGAGAGGAAGGGCTTCAAGATGTTGA
CAGATGTGACGATTCTGACAATCTCATTGGACTCTGTCACATTCACATGT
ACTATGGGCGGGTCTGACCAGTCTGACCGGATTTGCGATACCAAAACCAT
CAGTGACGTACTTAATTTCGACCATCAAAGGTTGTTCTTGAAGGCATTTA
TCTCCGCTTTTCGCGAAGCTACAATCACGGCATGTCTTGCCAATAGAATG
CCCGAAGTAGCACTGTACGTAGTGGCTGTGAGAGACAAAGACTGTGTTCT
CTTGCAGAAAGACGTGGGAGAGATGGGGAAGTCCGATCTGAGACTTGATG
CGAGGATACGTACTATCTGTTTCTTTCAACAGCATTCTCGAAGGTATACA
ATGGAACTTCGTAAGAATAGGGTCCCAGAGTTCAGCACGCAATGGTTGAT
GAAAAACATCAAGCTTATACTGAACAACCCAATTCTTGATGACCTTCTTC
CTGCAGACACTTTGAGTGTGGTGCGGCAGAGCATTCCCGCATTGCAAATG
ATGTTCGGGCACATAATTTCTTTGGGGGTAGCTGATTCTCTGGTACATGG
CGATCTGCATATGGGAAATCTTGGGGCGTTGAATTCTGGTCCACCACAAG
TATACAAGGTTTTTGACTGGGGGACAGCCATGATCGGTTGCCCTTTTTTG
ACGCAGTGA
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Coding sequence (CDS) from alignment at tig00000209_pilon:98663..99571-

>Ggra329.t1 ID=Ggra329.t1|Name=Ggra329.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000209_pilon:98663..99571- (Gracilaria gracilis GNS1m male)
ATGGAGATGACTAACTCCGAGAGATTCTTTCCAAAGACGTTCAACTGGGT
AAAGAAACGTTGTGCTGTGTCTACCATAGCAATTGAAAGAAATGGATATG
TTCAGAGAACACAGGGACTACCGTACTTCCATGTTGACAAATCCCGCACT
TTTATGACCTTCTCAGAGCCGTGGAAGTGTAGGGGCTGGTTTCAGGGTGT
ACAATTATGGCTAAAACTTGAGTTGGAGAGGAAGGGCTTCAAGATGTTGA
CAGATGTGACGATTCTGACAATCTCATTGGACTCTGTCACATTCACATGT
ACTATGGGCGGGTCTGACCAGTCTGACCGGATTTGCGATACCAAAACCAT
CAGTGACGTACTTAATTTCGACCATCAAAGGTTGTTCTTGAAGGCATTTA
TCTCCGCTTTTCGCGAAGCTACAATCACGGCATGTCTTGCCAATAGAATG
CCCGAAGTAGCACTGTACGTAGTGGCTGTGAGAGACAAAGACTGTGTTCT
CTTGCAGAAAGACGTGGGAGAGATGGGGAAGTCCGATCTGAGACTTGATG
CGAGGATACGTACTATCTGTTTCTTTCAACAGCATTCTCGAAGGTATACA
ATGGAACTTCGTAAGAATAGGGTCCCAGAGTTCAGCACGCAATGGTTGAT
GAAAAACATCAAGCTTATACTGAACAACCCAATTCTTGATGACCTTCTTC
CTGCAGACACTTTGAGTGTGGTGCGGCAGAGCATTCCCGCATTGCAAATG
ATGTTCGGGCACATAATTTCTTTGGGGGTAGCTGATTCTCTGGTACATGG
CGATCTGCATATGGGAAATCTTGGGGCGTTGAATTCTGGTCCACCACAAG
TATACAAGGTTTTTGACTGGGGGACAGCCATGATCGGTTGCCCTTTTTTG
ACGCAGTGA
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