Ggra3288.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3288.t1
Unique NameGgra3288.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:427127..427855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3288Ggra3288Gracilaria gracilis GNS1m malegenetig00000851_pilon 427127..427855 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3288.t1.start1Ggra3288.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 427127..427129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3288.t1.CDS1Ggra3288.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 427127..427855 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3288.t1.exon1Ggra3288.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 427127..427855 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3288.t1.stop1Ggra3288.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 427853..427855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3288.t1Ggra3288.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 427127..427855 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3288.t1 ID=Ggra3288.t1|Name=Ggra3288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=243bp
MINLVVRFLAFLPFMPTACIAQLPLPPLAAGPLRVFESEIADPAQPQNSN
VNRNNNSPMHPPTRRVRQGEQPPAPLKSFLRHPADSETTDGLHDFFSSMQ
PTALTTAHDEQELSLMPESMPEQLTEIALEEQLQPSLFQHVPVIVVDSHK
SSTVEQTNAADLDSAAASATNGATVPNPGEAVETDHDIDPSPEERDVGKD
NGLNGTRAQASYYSAQETELQIDSSESTANQDPSEQLTEEIK*
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spliced messenger RNA

>Ggra3288.t1 ID=Ggra3288.t1|Name=Ggra3288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000851_pilon:427127..427855+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTAATTTGGTCGTTCGCTTCCTGGCTTTTCTACCATTCATGCCAAC
TGCCTGCATTGCCCAACTGCCGCTCCCGCCTCTTGCTGCGGGCCCACTTC
GTGTATTTGAATCTGAAATCGCCGATCCCGCACAGCCTCAAAATTCAAAT
GTGAATAGAAACAACAACAGCCCAATGCACCCTCCAACGCGCCGCGTGCG
TCAGGGCGAGCAACCACCTGCGCCCCTCAAATCGTTCCTGCGCCATCCGG
CCGACAGCGAAACCACCGACGGCTTGCATGATTTCTTCTCTTCTATGCAG
CCGACTGCGCTCACTACTGCCCATGATGAGCAGGAGCTGTCTTTAATGCC
CGAGAGCATGCCAGAGCAGCTCACTGAAATTGCGCTGGAAGAGCAACTTC
AACCTTCATTGTTTCAACACGTGCCTGTTATTGTCGTCGACTCTCACAAA
TCTTCTACCGTCGAGCAAACCAACGCTGCTGACTTGGATAGTGCAGCTGC
TTCTGCTACCAATGGGGCCACTGTTCCGAATCCTGGCGAGGCTGTGGAAA
CTGACCATGACATTGACCCCTCTCCTGAAGAGAGAGATGTCGGCAAAGAC
AATGGACTGAATGGCACCAGAGCGCAAGCAAGTTACTACTCGGCTCAAGA
AACTGAATTACAAATTGACAGTTCTGAAAGCACAGCCAATCAGGATCCAA
GTGAGCAGTTGACGGAAGAGATTAAATAA
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protein sequence of Ggra3288.t1

>Ggra3288.t1 ID=Ggra3288.t1|Name=Ggra3288.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=243bp
MINLVVRFLAFLPFMPTACIAQLPLPPLAAGPLRVFESEIADPAQPQNSN
VNRNNNSPMHPPTRRVRQGEQPPAPLKSFLRHPADSETTDGLHDFFSSMQ
PTALTTAHDEQELSLMPESMPEQLTEIALEEQLQPSLFQHVPVIVVDSHK
SSTVEQTNAADLDSAAASATNGATVPNPGEAVETDHDIDPSPEERDVGKD
NGLNGTRAQASYYSAQETELQIDSSESTANQDPSEQLTEEIK*
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mRNA from alignment at tig00000851_pilon:427127..427855+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3288.t1 ID=Ggra3288.t1|Name=Ggra3288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000851_pilon:427127..427855+ (Gracilaria gracilis GNS1m male)
ATGATTAATTTGGTCGTTCGCTTCCTGGCTTTTCTACCATTCATGCCAAC
TGCCTGCATTGCCCAACTGCCGCTCCCGCCTCTTGCTGCGGGCCCACTTC
GTGTATTTGAATCTGAAATCGCCGATCCCGCACAGCCTCAAAATTCAAAT
GTGAATAGAAACAACAACAGCCCAATGCACCCTCCAACGCGCCGCGTGCG
TCAGGGCGAGCAACCACCTGCGCCCCTCAAATCGTTCCTGCGCCATCCGG
CCGACAGCGAAACCACCGACGGCTTGCATGATTTCTTCTCTTCTATGCAG
CCGACTGCGCTCACTACTGCCCATGATGAGCAGGAGCTGTCTTTAATGCC
CGAGAGCATGCCAGAGCAGCTCACTGAAATTGCGCTGGAAGAGCAACTTC
AACCTTCATTGTTTCAACACGTGCCTGTTATTGTCGTCGACTCTCACAAA
TCTTCTACCGTCGAGCAAACCAACGCTGCTGACTTGGATAGTGCAGCTGC
TTCTGCTACCAATGGGGCCACTGTTCCGAATCCTGGCGAGGCTGTGGAAA
CTGACCATGACATTGACCCCTCTCCTGAAGAGAGAGATGTCGGCAAAGAC
AATGGACTGAATGGCACCAGAGCGCAAGCAAGTTACTACTCGGCTCAAGA
AACTGAATTACAAATTGACAGTTCTGAAAGCACAGCCAATCAGGATCCAA
GTGAGCAGTTGACGGAAGAGATTAAATAA
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Coding sequence (CDS) from alignment at tig00000851_pilon:427127..427855+

>Ggra3288.t1 ID=Ggra3288.t1|Name=Ggra3288.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=729bp|location=Sequence derived from alignment at tig00000851_pilon:427127..427855+ (Gracilaria gracilis GNS1m male)
ATGATTAATTTGGTCGTTCGCTTCCTGGCTTTTCTACCATTCATGCCAAC
TGCCTGCATTGCCCAACTGCCGCTCCCGCCTCTTGCTGCGGGCCCACTTC
GTGTATTTGAATCTGAAATCGCCGATCCCGCACAGCCTCAAAATTCAAAT
GTGAATAGAAACAACAACAGCCCAATGCACCCTCCAACGCGCCGCGTGCG
TCAGGGCGAGCAACCACCTGCGCCCCTCAAATCGTTCCTGCGCCATCCGG
CCGACAGCGAAACCACCGACGGCTTGCATGATTTCTTCTCTTCTATGCAG
CCGACTGCGCTCACTACTGCCCATGATGAGCAGGAGCTGTCTTTAATGCC
CGAGAGCATGCCAGAGCAGCTCACTGAAATTGCGCTGGAAGAGCAACTTC
AACCTTCATTGTTTCAACACGTGCCTGTTATTGTCGTCGACTCTCACAAA
TCTTCTACCGTCGAGCAAACCAACGCTGCTGACTTGGATAGTGCAGCTGC
TTCTGCTACCAATGGGGCCACTGTTCCGAATCCTGGCGAGGCTGTGGAAA
CTGACCATGACATTGACCCCTCTCCTGAAGAGAGAGATGTCGGCAAAGAC
AATGGACTGAATGGCACCAGAGCGCAAGCAAGTTACTACTCGGCTCAAGA
AACTGAATTACAAATTGACAGTTCTGAAAGCACAGCCAATCAGGATCCAA
GTGAGCAGTTGACGGAAGAGATTAAATAA
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