Ggra3287.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3287.t1
Unique NameGgra3287.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:422048..423834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3287Ggra3287Gracilaria gracilis GNS1m malegenetig00000851_pilon 422048..423834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3287.t1Ggra3287.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 422048..423834 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3287.t1.start1Ggra3287.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 422048..422050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3287.t1.CDS1Ggra3287.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 422048..422272 +
Ggra3287.t1.CDS2Ggra3287.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000851_pilon 422990..423180 +
Ggra3287.t1.CDS3Ggra3287.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000851_pilon 423642..423834 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3287.t1.exon1Ggra3287.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 422048..422272 +
Ggra3287.t1.exon2Ggra3287.t1.exon2Gracilaria gracilis GNS1m maleexontig00000851_pilon 422990..423180 +
Ggra3287.t1.exon3Ggra3287.t1.exon3Gracilaria gracilis GNS1m maleexontig00000851_pilon 423642..423834 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3287.t1.intron1Ggra3287.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000851_pilon 422273..422989 +
Ggra3287.t1.intron2Ggra3287.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000851_pilon 423181..423641 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3287.t1.stop1Ggra3287.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 423832..423834 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3287.t1 ID=Ggra3287.t1|Name=Ggra3287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=203bp
MVQVNVIEQMYPHHHGATANGKTVVLPPLPVNIAAVFNINGSNFQPNTSV
PDVMNGSAANNLQSAGTVHRQLFGDESGKARIKDSGNGLPQWSGKANANG
HSKVGSDAAKQEGSQEEETYVGSAGAAGPNAHSPELEMRGCRAVLEAVGM
RLCSEAVGEDRDEEEEDHENEREEVAGLGESQGENEENEAPADAAARCLR
QW*
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spliced messenger RNA

>Ggra3287.t1 ID=Ggra3287.t1|Name=Ggra3287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000851_pilon:422048..423834+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCAAGTCAACGTCATCGAGCAGATGTACCCGCATCACCATGGTGC
CACGGCCAACGGTAAGACTGTTGTGCTGCCGCCATTGCCGGTGAATATAG
CGGCAGTATTTAACATCAATGGCTCCAATTTTCAACCAAATACCTCCGTG
CCCGATGTAATGAATGGATCAGCTGCCAACAACCTGCAGTCGGCTGGCAC
AGTCCACCGCCAACTGTTCGGTGACGAGAGTGGCAAGGCAAGAATCAAGG
ACAGCGGCAATGGACTGCCGCAATGGAGCGGAAAGGCCAATGCCAACGGG
CATAGCAAGGTTGGCAGCGACGCCGCGAAGCAAGAGGGCTCGCAGGAGGA
GGAGACGTATGTTGGTAGTGCCGGCGCAGCGGGGCCAAATGCGCACTCGC
CTGAGCTGGAGATGCGAGGGTGCCGTGCCGTGCTGGAGGCGGTGGGCATG
CGGCTGTGCAGTGAAGCGGTGGGCGAGGACAGGGATGAAGAAGAGGAGGA
CCACGAAAATGAGAGGGAAGAGGTCGCGGGGCTGGGCGAGAGCCAGGGCG
AGAACGAGGAGAATGAGGCGCCCGCAGACGCGGCGGCAAGATGCTTGCGG
CAGTGGTAG
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protein sequence of Ggra3287.t1

>Ggra3287.t1 ID=Ggra3287.t1|Name=Ggra3287.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=203bp
MVQVNVIEQMYPHHHGATANGKTVVLPPLPVNIAAVFNINGSNFQPNTSV
PDVMNGSAANNLQSAGTVHRQLFGDESGKARIKDSGNGLPQWSGKANANG
HSKVGSDAAKQEGSQEEETYVGSAGAAGPNAHSPELEMRGCRAVLEAVGM
RLCSEAVGEDRDEEEEDHENEREEVAGLGESQGENEENEAPADAAARCLR
QW*
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mRNA from alignment at tig00000851_pilon:422048..423834+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3287.t1 ID=Ggra3287.t1|Name=Ggra3287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1787bp|location=Sequence derived from alignment at tig00000851_pilon:422048..423834+ (Gracilaria gracilis GNS1m male)
ATGGTGCAAGTCAACGTCATCGAGCAGATGTACCCGCATCACCATGGTGC
CACGGCCAACGGTAAGACTGTTGTGCTGCCGCCATTGCCGGTGAATATAG
CGGCAGTATTTAACATCAATGGCTCCAATTTTCAACCAAATACCTCCGTG
CCCGATGTAATGAATGGATCAGCTGCCAACAACCTGCAGTCGGCTGGCAC
AGTCCACCGCCAACTGTTCGGTGACGTAACCGCCGTATGAAAAGTATGCA
CCGTCTCAGCTGAACATGGGAGCCTAAGCGATCAACGGCGTGGAGTAATC
CGCCTTTTGGGCGGCACGGtcaggagggtatggaaggcacgatcggcatg
cagaaaagtacaaacggcacgcatacatctTCGCCGAAATAGAAGTGGGC
TGAAGTGGTTCACTCCAACAAGCCCGGTATCGTGAACGTGTACAATCAGA
GTAaccaacaccaccaccatcaccatcacTCTGCTGACAGCGGTGGAAAT
GCGATGAAGAATGCGAGTAGAAAAACGCTGTCATGTGGTACCAATTACAG
CAATGGAAGTGAACGGGAGAATCCGCGCACTAGAGTGGGAGTCTGTGCAT
CGGCGGAGAATGGAACAAATGATCGGGTGCACTGGAGGCTCGGGCGAAGT
AGCCGGTAGAATGGACGGAATCAGAATGGAAATACTGAGAACGGACGGGT
GGCATATTCAAGGGCTAAAATGGTGATGGACTCGGACAATATCGGCAAGG
AGAAGAGCAATCACGCGACTTTGCGGGCAGGCTAGACACAGTTGCTTGAG
GCTCACGGGATGCAACGTGACGATAGTGCGGGTGAGAGCGTGAGTGGACA
GGATGATGTGCGAAAGCAGCTGGGGAGCAAGATTTGTGGGACGGGCGGTT
GTAGTAGTAAAAAGCGCGCGCGCTCATGGAGTCATCGAACAGGAGAGTGG
CAAGGCAAGAATCAAGGACAGCGGCAATGGACTGCCGCAATGGAGCGGAA
AGGCCAATGCCAACGGGCATAGCAAGGTTGGCAGCGACGCCGCGAAGCAA
GAGGGCTCGCAGGAGGAGGAGACGTATGTTGGTAGTGCCGGCGCAGCGGG
GCCAAATGCGCACTCGCCTGAGCTGGAGATGCGGTGTGAAGGAGGTTGCC
GCAACAGAAAACAATAGAGAAAAGCAGTGGTGGAGTCGGATAGTAAGCTT
AAGCTTAAGCGGCAAAGACGACACAACGTGGCCGGCAACACCAGGGTGCC
GGCGATGGTGCACGGCGAGGTCAATCTCTGTGGTCTGCGCAAAATCGGGC
CCCCCACCCcagcgaccgcgagtagacacctgaggacggcgacacctcaa
acgggagcaacagcaatactggttgtggcagcggctgtgggagtggcgat
ggtggcagagagtgtggcaacggcagcggcggcgatgtagaggaccgcgg
cgctatcgccagcgatgacggaagcatgaaccggtcgcgcgacagagaat
gcggggcggcagtgCGGCTGGATGACCGAGCGTGTGAACGGCTGCGTTGC
GCGCACTGGCCCGTGAATACGTCATCGCGCCTGGTGTCGTGAAGAGGGTG
CCGTGCCGTGCTGGAGGCGGTGGGCATGCGGCTGTGCAGTGAAGCGGTGG
GCGAGGACAGGGATGAAGAAGAGGAGGACCACGAAAATGAGAGGGAAGAG
GTCGCGGGGCTGGGCGAGAGCCAGGGCGAGAACGAGGAGAATGAGGCGCC
CGCAGACGCGGCGGCAAGATGCTTGCGGCAGTGGTAG
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Coding sequence (CDS) from alignment at tig00000851_pilon:422048..423834+

>Ggra3287.t1 ID=Ggra3287.t1|Name=Ggra3287.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=609bp|location=Sequence derived from alignment at tig00000851_pilon:422048..423834+ (Gracilaria gracilis GNS1m male)
ATGGTGCAAGTCAACGTCATCGAGCAGATGTACCCGCATCACCATGGTGC
CACGGCCAACGGTAAGACTGTTGTGCTGCCGCCATTGCCGGTGAATATAG
CGGCAGTATTTAACATCAATGGCTCCAATTTTCAACCAAATACCTCCGTG
CCCGATGTAATGAATGGATCAGCTGCCAACAACCTGCAGTCGGCTGGCAC
AGTCCACCGCCAACTGTTCGGTGACGAGAGTGGCAAGGCAAGAATCAAGG
ACAGCGGCAATGGACTGCCGCAATGGAGCGGAAAGGCCAATGCCAACGGG
CATAGCAAGGTTGGCAGCGACGCCGCGAAGCAAGAGGGCTCGCAGGAGGA
GGAGACGTATGTTGGTAGTGCCGGCGCAGCGGGGCCAAATGCGCACTCGC
CTGAGCTGGAGATGCGAGGGTGCCGTGCCGTGCTGGAGGCGGTGGGCATG
CGGCTGTGCAGTGAAGCGGTGGGCGAGGACAGGGATGAAGAAGAGGAGGA
CCACGAAAATGAGAGGGAAGAGGTCGCGGGGCTGGGCGAGAGCCAGGGCG
AGAACGAGGAGAATGAGGCGCCCGCAGACGCGGCGGCAAGATGCTTGCGG
CAGTGGTAG
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