Ggra3282.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3282.t1
Unique NameGgra3282.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:290922..292100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000024813
Max annot lvl121069|Pythiales
Evalue4.62e-22
EggNOG OGs2CRG1@1|root,2R7YG@2759|Eukaryota,1MK2E@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3282Ggra3282Gracilaria gracilis GNS1m malegenetig00000851_pilon 290922..292100 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3282.t1.stop1Ggra3282.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 290922..290924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3282.t1.CDS1Ggra3282.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 290922..292100 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3282.t1.exon1Ggra3282.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 290922..292100 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3282.t1.start1Ggra3282.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 292098..292100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3282.t1Ggra3282.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 290922..292100 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3282.t1 ID=Ggra3282.t1|Name=Ggra3282.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MEWVSDKEDEVYRALTENVSGAPSEPRTVALLSPSPPVVEGQTFNHPSAS
MFPVARAPQVHRHQEGSHCVNTTSDGRVHARSSVDIAPTRTQSTGIARAI
ILPSITKTKRPPKHNNRATASNTGGRGSGFTQNEIDSLLEVLEKHLFVGR
DEWEAVQRIHYCRFPEHARNIDSLKRKFSALHRKKVPTGDRHIPEDVNHA
KYIREQISKRVDLRDGEDVEEVAEERFQNTENCLDDTNGMEQPNQLEPET
HTACPNTDTPGSHTASRPPSRPPSLTGRPGFSPRPLIRKRSSPPPENGDD
LMSIYKMTLLEEQKHRAEEHERPMQERVEERTRREEERKRREEERAAERD
RREEDNLRQDRFMQMLMVMAFGGKGNDVPCSLFPDPHENTGS*
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spliced messenger RNA

>Ggra3282.t1 ID=Ggra3282.t1|Name=Ggra3282.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000851_pilon:290922..292100- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATGGGTTTCCGACAAGGAAGATGAGGTGTACCGGGCATTAACAGA
AAACGTGTCAGGCGCACCCTCGGAGCCAAGAACCGTGGCACTGTTGTCTC
CGTCGCCTCCCGTTGTTGAAGGTCAAACATTTAATCACCCTTCCGCGAGT
ATGTTCCCAGTAGCAAGAGCACCACAAGTACATCGACATCAAGAAGGTTC
GCACTGTGTTAATACTACGTCTGATGGAAGGGTCCATGCGAGAAGCTCAG
TGGATATTGCGCCAACGCGCACGCAATCTACGGGTATCGCTCGGGCTATA
ATTCTCCCATCAATCACCAAAACGAAACGACCTCCCAAGCATAACAACCG
CGCCACTGCAAGCAACACCGGGGGGCGGGGAAGCGGATTTACGCAAAACG
AAATTGACTCGCTGCTGGAGGTATTGGAGAAGCACCTCTTTGTGGGGAGA
GATGAGTGGGAGGCAGTACAGAGGATTCATTACTGTCGATTTCCCGAACA
TGCGAGAAACATTGATTCATTAAAACGAAAGTTCTCTGCGTTGCACCGCA
AGAAAGTTCCTACCGGAGACCGGCATATACCGGAAGACGTCAATCACGCC
AAATATATTCGAGAGCAAATTTCAAAGAGGGTCGACTTGAGAGACGGTGA
GGATGTGGAGGAAGTGGCTGAAGAGCGCTTCCAGAACACCGAGAACTGCC
TTGATGATACAAACGGGATGGAGCAACCAAACCAGTTGGAACCTGAGACA
CACACTGCATGCCCTAACACGGACACACCGGGCAGCCACACGGCCAGCAG
GCCACCCAGCAGACCACCATCACTAACTGGCAGGCCAGGATTCTCACCAC
GACCTTTGATTAGAAAGCGTTCGTCACCCCCGCCAGAGAATGGAGATGAT
CTCATGTCAATTTACAAGATGACCCTGCTCGAAGAGCAGAAGCATAGAGC
TGAGGAGCACGAGCGTCCGATGCAGGAACGGGTGGAGGAGCGGACACGAC
GAGAAGAGGAACGGAAGAGACGTGAAGAAGAACGAGCAGCAGAGCGCGAT
CGTCGTGAGGAGGACAATCTCCGTCAGGATAGATTTATGCAGATGCTAAT
GGTAATGGCCTTTGGTGGAAAGGGCAACGATGTGCCTTGTTCCCTTTTCC
CAGACCCCCACGAAAACACCGGGTCTTAA
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protein sequence of Ggra3282.t1

>Ggra3282.t1 ID=Ggra3282.t1|Name=Ggra3282.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MEWVSDKEDEVYRALTENVSGAPSEPRTVALLSPSPPVVEGQTFNHPSAS
MFPVARAPQVHRHQEGSHCVNTTSDGRVHARSSVDIAPTRTQSTGIARAI
ILPSITKTKRPPKHNNRATASNTGGRGSGFTQNEIDSLLEVLEKHLFVGR
DEWEAVQRIHYCRFPEHARNIDSLKRKFSALHRKKVPTGDRHIPEDVNHA
KYIREQISKRVDLRDGEDVEEVAEERFQNTENCLDDTNGMEQPNQLEPET
HTACPNTDTPGSHTASRPPSRPPSLTGRPGFSPRPLIRKRSSPPPENGDD
LMSIYKMTLLEEQKHRAEEHERPMQERVEERTRREEERKRREEERAAERD
RREEDNLRQDRFMQMLMVMAFGGKGNDVPCSLFPDPHENTGS*
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mRNA from alignment at tig00000851_pilon:290922..292100-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3282.t1 ID=Ggra3282.t1|Name=Ggra3282.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000851_pilon:290922..292100- (Gracilaria gracilis GNS1m male)
ATGGAATGGGTTTCCGACAAGGAAGATGAGGTGTACCGGGCATTAACAGA
AAACGTGTCAGGCGCACCCTCGGAGCCAAGAACCGTGGCACTGTTGTCTC
CGTCGCCTCCCGTTGTTGAAGGTCAAACATTTAATCACCCTTCCGCGAGT
ATGTTCCCAGTAGCAAGAGCACCACAAGTACATCGACATCAAGAAGGTTC
GCACTGTGTTAATACTACGTCTGATGGAAGGGTCCATGCGAGAAGCTCAG
TGGATATTGCGCCAACGCGCACGCAATCTACGGGTATCGCTCGGGCTATA
ATTCTCCCATCAATCACCAAAACGAAACGACCTCCCAAGCATAACAACCG
CGCCACTGCAAGCAACACCGGGGGGCGGGGAAGCGGATTTACGCAAAACG
AAATTGACTCGCTGCTGGAGGTATTGGAGAAGCACCTCTTTGTGGGGAGA
GATGAGTGGGAGGCAGTACAGAGGATTCATTACTGTCGATTTCCCGAACA
TGCGAGAAACATTGATTCATTAAAACGAAAGTTCTCTGCGTTGCACCGCA
AGAAAGTTCCTACCGGAGACCGGCATATACCGGAAGACGTCAATCACGCC
AAATATATTCGAGAGCAAATTTCAAAGAGGGTCGACTTGAGAGACGGTGA
GGATGTGGAGGAAGTGGCTGAAGAGCGCTTCCAGAACACCGAGAACTGCC
TTGATGATACAAACGGGATGGAGCAACCAAACCAGTTGGAACCTGAGACA
CACACTGCATGCCCTAACACGGACACACCGGGCAGCCACACGGCCAGCAG
GCCACCCAGCAGACCACCATCACTAACTGGCAGGCCAGGATTCTCACCAC
GACCTTTGATTAGAAAGCGTTCGTCACCCCCGCCAGAGAATGGAGATGAT
CTCATGTCAATTTACAAGATGACCCTGCTCGAAGAGCAGAAGCATAGAGC
TGAGGAGCACGAGCGTCCGATGCAGGAACGGGTGGAGGAGCGGACACGAC
GAGAAGAGGAACGGAAGAGACGTGAAGAAGAACGAGCAGCAGAGCGCGAT
CGTCGTGAGGAGGACAATCTCCGTCAGGATAGATTTATGCAGATGCTAAT
GGTAATGGCCTTTGGTGGAAAGGGCAACGATGTGCCTTGTTCCCTTTTCC
CAGACCCCCACGAAAACACCGGGTCTTAA
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Coding sequence (CDS) from alignment at tig00000851_pilon:290922..292100-

>Ggra3282.t1 ID=Ggra3282.t1|Name=Ggra3282.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000851_pilon:290922..292100- (Gracilaria gracilis GNS1m male)
ATGGAATGGGTTTCCGACAAGGAAGATGAGGTGTACCGGGCATTAACAGA
AAACGTGTCAGGCGCACCCTCGGAGCCAAGAACCGTGGCACTGTTGTCTC
CGTCGCCTCCCGTTGTTGAAGGTCAAACATTTAATCACCCTTCCGCGAGT
ATGTTCCCAGTAGCAAGAGCACCACAAGTACATCGACATCAAGAAGGTTC
GCACTGTGTTAATACTACGTCTGATGGAAGGGTCCATGCGAGAAGCTCAG
TGGATATTGCGCCAACGCGCACGCAATCTACGGGTATCGCTCGGGCTATA
ATTCTCCCATCAATCACCAAAACGAAACGACCTCCCAAGCATAACAACCG
CGCCACTGCAAGCAACACCGGGGGGCGGGGAAGCGGATTTACGCAAAACG
AAATTGACTCGCTGCTGGAGGTATTGGAGAAGCACCTCTTTGTGGGGAGA
GATGAGTGGGAGGCAGTACAGAGGATTCATTACTGTCGATTTCCCGAACA
TGCGAGAAACATTGATTCATTAAAACGAAAGTTCTCTGCGTTGCACCGCA
AGAAAGTTCCTACCGGAGACCGGCATATACCGGAAGACGTCAATCACGCC
AAATATATTCGAGAGCAAATTTCAAAGAGGGTCGACTTGAGAGACGGTGA
GGATGTGGAGGAAGTGGCTGAAGAGCGCTTCCAGAACACCGAGAACTGCC
TTGATGATACAAACGGGATGGAGCAACCAAACCAGTTGGAACCTGAGACA
CACACTGCATGCCCTAACACGGACACACCGGGCAGCCACACGGCCAGCAG
GCCACCCAGCAGACCACCATCACTAACTGGCAGGCCAGGATTCTCACCAC
GACCTTTGATTAGAAAGCGTTCGTCACCCCCGCCAGAGAATGGAGATGAT
CTCATGTCAATTTACAAGATGACCCTGCTCGAAGAGCAGAAGCATAGAGC
TGAGGAGCACGAGCGTCCGATGCAGGAACGGGTGGAGGAGCGGACACGAC
GAGAAGAGGAACGGAAGAGACGTGAAGAAGAACGAGCAGCAGAGCGCGAT
CGTCGTGAGGAGGACAATCTCCGTCAGGATAGATTTATGCAGATGCTAAT
GGTAATGGCCTTTGGTGGAAAGGGCAACGATGTGCCTTGTTCCCTTTTCC
CAGACCCCCACGAAAACACCGGGTCTTAA
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