Ggra328.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra328.t1
Unique NameGgra328.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000209_piloncontigtig00000209_pilon:88617..89858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra328Ggra328Gracilaria gracilis GNS1m malegenetig00000209_pilon 88617..89858 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra328.t1.stop1Ggra328.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000209_pilon 88617..88619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra328.t1.CDS1Ggra328.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000209_pilon 88617..89858 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra328.t1.exon1Ggra328.t1.exon1Gracilaria gracilis GNS1m maleexontig00000209_pilon 88617..89858 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra328.t1.start1Ggra328.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000209_pilon 89856..89858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra328.t1Ggra328.t1Gracilaria gracilis GNS1m malepolypeptidetig00000209_pilon 88617..89858 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra328.t1 ID=Ggra328.t1|Name=Ggra328.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MRRKRVKAQTREKPSPLPCNGVSKTITKSNRDNVSIVRQILRKARSKELK
PQGKVLADSIPDVVRWVRELMDMEIKETREQSPCRHQNRTLSCNARSFAQ
KIVRKYEVRILMNGSKYWRGETRMWENVCALAAKLPREGEGRNIFDAMSR
YPSSSIVYSGLKLLYGRHVVVAGRKVPRFSLPKNEIALFSRNRSVGTVAR
KWFEPNTLARMQELVFHMCAISEYILRCAYQCKETNAEGINGATGFLFFV
EHRIKVDLDCKNRKVLRFDSWDPMAGLPAESLSSCLEKSLTVAHSAVIEG
AKIACRRYGRKGRNGSSRIRIQPWVLRRPLPDVMDTLINRLETVLLDVLG
SGVDFDMFRVFAMRHLRSVDMIFTEIGKAWFEDELDFKPPREVPRNAEAL
VSSLPYTYGPSRV*
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spliced messenger RNA

>Ggra328.t1 ID=Ggra328.t1|Name=Ggra328.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000209_pilon:88617..89858- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAAGGAAAAGAGTGAAGGCCCAAACCAGAGAGAAGCCAAGTCCATT
GCCTTGCAATGGAGTCTCGAAGACAATCACGAAGAGTAATAGGGATAACG
TTTCTATTGTAAGGCAAATTCTTAGAAAGGCAAGAAGCAAAGAACTGAAG
CCACAGGGTAAAGTATTGGCCGATTCAATTCCGGATGTGGTGCGGTGGGT
TCGAGAACTGATGGATATGGAAATCAAGGAAACCAGAGAGCAGAGTCCTT
GCAGACATCAAAACAGGACGCTTTCTTGTAATGCGCGATCATTTGCGCAG
AAGATCGTAAGAAAGTACGAAGTGCGCATTTTGATGAACGGGTCGAAGTA
CTGGCGGGGTGAGACTAGGATGTGGGAAAACGTTTGTGCTCTTGCAGCAA
AACTTCCGAGAGAAGGTGAAGGAAGAAACATTTTCGATGCTATGTCTCGT
TATCCGTCCTCTAGTATTGTCTACAGTGGTCTGAAGTTACTCTATGGGCG
ACATGTAGTGGTCGCCGGTAGGAAGGTACCACGCTTCTCGTTGCCCAAAA
ATGAAATCGCGCTCTTCAGTCGAAACAGGAGCGTTGGAACGGTGGCAAGA
AAGTGGTTTGAACCCAATACACTTGCAAGAATGCAAGAACTTGTTTTTCA
TATGTGCGCTATATCCGAGTATATACTGAGATGTGCATATCAATGTAAGG
AGACAAATGCAGAGGGGATAAATGGAGCAACTGGCTTTCTTTTTTTTGTT
GAACATCGGATTAAGGTTGATCTAGACTGCAAGAACAGAAAAGTGTTACG
CTTCGACTCTTGGGATCCAATGGCCGGGCTCCCTGCTGAGAGTCTCTCCT
CGTGTCTTGAGAAGTCACTCACGGTGGCTCATAGTGCTGTTATAGAAGGC
GCGAAGATAGCTTGCAGGAGATATGGACGAAAGGGAAGGAACGGGAGCAG
TCGAATACGGATACAACCCTGGGTGCTGAGACGGCCACTCCCAGACGTCA
TGGATACTCTCATCAACCGATTGGAAACTGTTTTGCTCGATGTACTGGGA
AGCGGCGTAGACTTCGATATGTTTCGAGTTTTTGCAATGAGACATCTCAG
AAGTGTTGATATGATATTCACAGAGATAGGTAAAGCTTGGTTCGAGGACG
AGTTGGATTTCAAACCTCCGCGGGAAGTTCCGAGGAACGCAGAAGCTCTC
GTCTCCTCGCTACCTTATACTTATGGCCCTTCTCGAGTTTGA
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protein sequence of Ggra328.t1

>Ggra328.t1 ID=Ggra328.t1|Name=Ggra328.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MRRKRVKAQTREKPSPLPCNGVSKTITKSNRDNVSIVRQILRKARSKELK
PQGKVLADSIPDVVRWVRELMDMEIKETREQSPCRHQNRTLSCNARSFAQ
KIVRKYEVRILMNGSKYWRGETRMWENVCALAAKLPREGEGRNIFDAMSR
YPSSSIVYSGLKLLYGRHVVVAGRKVPRFSLPKNEIALFSRNRSVGTVAR
KWFEPNTLARMQELVFHMCAISEYILRCAYQCKETNAEGINGATGFLFFV
EHRIKVDLDCKNRKVLRFDSWDPMAGLPAESLSSCLEKSLTVAHSAVIEG
AKIACRRYGRKGRNGSSRIRIQPWVLRRPLPDVMDTLINRLETVLLDVLG
SGVDFDMFRVFAMRHLRSVDMIFTEIGKAWFEDELDFKPPREVPRNAEAL
VSSLPYTYGPSRV*
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mRNA from alignment at tig00000209_pilon:88617..89858-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra328.t1 ID=Ggra328.t1|Name=Ggra328.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000209_pilon:88617..89858- (Gracilaria gracilis GNS1m male)
ATGAGAAGGAAAAGAGTGAAGGCCCAAACCAGAGAGAAGCCAAGTCCATT
GCCTTGCAATGGAGTCTCGAAGACAATCACGAAGAGTAATAGGGATAACG
TTTCTATTGTAAGGCAAATTCTTAGAAAGGCAAGAAGCAAAGAACTGAAG
CCACAGGGTAAAGTATTGGCCGATTCAATTCCGGATGTGGTGCGGTGGGT
TCGAGAACTGATGGATATGGAAATCAAGGAAACCAGAGAGCAGAGTCCTT
GCAGACATCAAAACAGGACGCTTTCTTGTAATGCGCGATCATTTGCGCAG
AAGATCGTAAGAAAGTACGAAGTGCGCATTTTGATGAACGGGTCGAAGTA
CTGGCGGGGTGAGACTAGGATGTGGGAAAACGTTTGTGCTCTTGCAGCAA
AACTTCCGAGAGAAGGTGAAGGAAGAAACATTTTCGATGCTATGTCTCGT
TATCCGTCCTCTAGTATTGTCTACAGTGGTCTGAAGTTACTCTATGGGCG
ACATGTAGTGGTCGCCGGTAGGAAGGTACCACGCTTCTCGTTGCCCAAAA
ATGAAATCGCGCTCTTCAGTCGAAACAGGAGCGTTGGAACGGTGGCAAGA
AAGTGGTTTGAACCCAATACACTTGCAAGAATGCAAGAACTTGTTTTTCA
TATGTGCGCTATATCCGAGTATATACTGAGATGTGCATATCAATGTAAGG
AGACAAATGCAGAGGGGATAAATGGAGCAACTGGCTTTCTTTTTTTTGTT
GAACATCGGATTAAGGTTGATCTAGACTGCAAGAACAGAAAAGTGTTACG
CTTCGACTCTTGGGATCCAATGGCCGGGCTCCCTGCTGAGAGTCTCTCCT
CGTGTCTTGAGAAGTCACTCACGGTGGCTCATAGTGCTGTTATAGAAGGC
GCGAAGATAGCTTGCAGGAGATATGGACGAAAGGGAAGGAACGGGAGCAG
TCGAATACGGATACAACCCTGGGTGCTGAGACGGCCACTCCCAGACGTCA
TGGATACTCTCATCAACCGATTGGAAACTGTTTTGCTCGATGTACTGGGA
AGCGGCGTAGACTTCGATATGTTTCGAGTTTTTGCAATGAGACATCTCAG
AAGTGTTGATATGATATTCACAGAGATAGGTAAAGCTTGGTTCGAGGACG
AGTTGGATTTCAAACCTCCGCGGGAAGTTCCGAGGAACGCAGAAGCTCTC
GTCTCCTCGCTACCTTATACTTATGGCCCTTCTCGAGTTTGA
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Coding sequence (CDS) from alignment at tig00000209_pilon:88617..89858-

>Ggra328.t1 ID=Ggra328.t1|Name=Ggra328.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000209_pilon:88617..89858- (Gracilaria gracilis GNS1m male)
ATGAGAAGGAAAAGAGTGAAGGCCCAAACCAGAGAGAAGCCAAGTCCATT
GCCTTGCAATGGAGTCTCGAAGACAATCACGAAGAGTAATAGGGATAACG
TTTCTATTGTAAGGCAAATTCTTAGAAAGGCAAGAAGCAAAGAACTGAAG
CCACAGGGTAAAGTATTGGCCGATTCAATTCCGGATGTGGTGCGGTGGGT
TCGAGAACTGATGGATATGGAAATCAAGGAAACCAGAGAGCAGAGTCCTT
GCAGACATCAAAACAGGACGCTTTCTTGTAATGCGCGATCATTTGCGCAG
AAGATCGTAAGAAAGTACGAAGTGCGCATTTTGATGAACGGGTCGAAGTA
CTGGCGGGGTGAGACTAGGATGTGGGAAAACGTTTGTGCTCTTGCAGCAA
AACTTCCGAGAGAAGGTGAAGGAAGAAACATTTTCGATGCTATGTCTCGT
TATCCGTCCTCTAGTATTGTCTACAGTGGTCTGAAGTTACTCTATGGGCG
ACATGTAGTGGTCGCCGGTAGGAAGGTACCACGCTTCTCGTTGCCCAAAA
ATGAAATCGCGCTCTTCAGTCGAAACAGGAGCGTTGGAACGGTGGCAAGA
AAGTGGTTTGAACCCAATACACTTGCAAGAATGCAAGAACTTGTTTTTCA
TATGTGCGCTATATCCGAGTATATACTGAGATGTGCATATCAATGTAAGG
AGACAAATGCAGAGGGGATAAATGGAGCAACTGGCTTTCTTTTTTTTGTT
GAACATCGGATTAAGGTTGATCTAGACTGCAAGAACAGAAAAGTGTTACG
CTTCGACTCTTGGGATCCAATGGCCGGGCTCCCTGCTGAGAGTCTCTCCT
CGTGTCTTGAGAAGTCACTCACGGTGGCTCATAGTGCTGTTATAGAAGGC
GCGAAGATAGCTTGCAGGAGATATGGACGAAAGGGAAGGAACGGGAGCAG
TCGAATACGGATACAACCCTGGGTGCTGAGACGGCCACTCCCAGACGTCA
TGGATACTCTCATCAACCGATTGGAAACTGTTTTGCTCGATGTACTGGGA
AGCGGCGTAGACTTCGATATGTTTCGAGTTTTTGCAATGAGACATCTCAG
AAGTGTTGATATGATATTCACAGAGATAGGTAAAGCTTGGTTCGAGGACG
AGTTGGATTTCAAACCTCCGCGGGAAGTTCCGAGGAACGCAGAAGCTCTC
GTCTCCTCGCTACCTTATACTTATGGCCCTTCTCGAGTTTGA
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