Ggra3276.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3276.t1
Unique NameGgra3276.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:196369..197367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD20910
Max annot lvl2903.EOD20910|-
Evalue3.95e-25
EggNOG OGs2EXBI@1|root,2SZ19@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3276Ggra3276Gracilaria gracilis GNS1m malegenetig00000851_pilon 196369..197367 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3276.t1.stop1Ggra3276.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 196369..196371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3276.t1.CDS1Ggra3276.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 196369..197367 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3276.t1.exon1Ggra3276.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 196369..197367 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3276.t1.start1Ggra3276.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 197365..197367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3276.t1Ggra3276.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 196369..197367 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3276.t1 ID=Ggra3276.t1|Name=Ggra3276.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp
MCNPVVSKPRALRAGVRASVSAAALISAALLLLLALLVTRAPSLYGAASS
AARFDAIGTPVRHDWPSSSRAARADDDECAPLFKKLATHGMLCGARARAR
SCKRHPDWKSLKLGAVWLFSQFGQDAYLFTRHFTHLRRPGVYVDVASNAP
KRLSNSFFFDRCLRWKGVCVEANGMYHEPTFRERSCLLVPTCAGATDGER
VSFVLDGELGGVAGKSYKFGKGSSNQTRVDMRCTALRTVLRRAGVRRVDF
LSLDVEGHELQVLKGVDWHTTRIDVISVEVTPSFDDVQRMLLGLGYVRHV
VGKESEISPIGKGFLGMDAIFLRSDVTLGEPN*
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spliced messenger RNA

>Ggra3276.t1 ID=Ggra3276.t1|Name=Ggra3276.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000851_pilon:196369..197367- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAACCCCGTCGTGTCCAAGCCGCGCGCGTTGCGCGCGGGCGTGCG
CGCGTCCGTGTCGGCCGCCGCGCTGATCTCCGCCGCGCTGCTGCTGCTGC
TCGCGCTGCTGGTCACGCGCGCGCCGTCGCTGTACGGCGCCGCCTCGTCC
GCCGCGCGCTTCGACGCCATCGGCACGCCGGTGCGCCACGACTGGCCGTC
TTCCTCGCGCGCGGCGCGCGCCGACGACGACGAGTGCGCGCCGCTGTTCA
AAAAGCTGGCGACGCACGGCATGCTATGCGGCGCGCGTGCGCGCGCACGC
AGCTGCAAGCGCCACCCGGATTGGAAGTCGCTCAAGCTGGGCGCCGTGTG
GTTGTTCTCGCAGTTCGGGCAGGACGCGTATCTGTTCACGCGCCACTTCA
CGCACCTGCGGCGGCCGGGCGTGTACGTGGACGTAGCGTCCAACGCGCCG
AAGCGGCTTTCAAACTCGTTTTTCTTCGACCGCTGCCTGCGCTGGAAGGG
CGTGTGCGTGGAGGCGAACGGCATGTACCACGAGCCGACGTTCCGCGAGC
GTTCTTGCTTGCTGGTGCCCACGTGCGCGGGCGCCACGGACGGCGAGCGC
GTGTCGTTCGTGCTGGACGGCGAGCTGGGCGGCGTGGCGGGCAAGTCGTA
CAAGTTTGGAAAGGGCTCCTCCAACCAGACGCGTGTTGACATGCGATGTA
CGGCGCTGCGGACTGTGCTGCGGCGCGCCGGCGTGCGACGCGTGGACTTT
CTCAGCTTGGACGTGGAGGGCCACGAGCTGCAGGTGCTCAAGGGCGTGGA
TTGGCACACGACGCGTATTGACGTGATCAGCGTAGAGGTGACGCCTAGCT
TTGACGATGTGCAGCGTATGCTGCTGGGGCTGGGCTACGTGCGCCATGTG
GTGGGCAAGGAGAGCGAGATCTCGCCGATTGGAAAGGGCTTTCTGGGCAT
GGACGCCATCTTCCTGCGTTCGGATGTGACACTGGGTGAGCCCAATTGA
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protein sequence of Ggra3276.t1

>Ggra3276.t1 ID=Ggra3276.t1|Name=Ggra3276.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MCNPVVSKPRALRAGVRASVSAAALISAALLLLLALLVTRAPSLYGAASS
AARFDAIGTPVRHDWPSSSRAARADDDECAPLFKKLATHGMLCGARARAR
SCKRHPDWKSLKLGAVWLFSQFGQDAYLFTRHFTHLRRPGVYVDVASNAP
KRLSNSFFFDRCLRWKGVCVEANGMYHEPTFRERSCLLVPTCAGATDGER
VSFVLDGELGGVAGKSYKFGKGSSNQTRVDMRCTALRTVLRRAGVRRVDF
LSLDVEGHELQVLKGVDWHTTRIDVISVEVTPSFDDVQRMLLGLGYVRHV
VGKESEISPIGKGFLGMDAIFLRSDVTLGEPN*
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mRNA from alignment at tig00000851_pilon:196369..197367-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3276.t1 ID=Ggra3276.t1|Name=Ggra3276.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000851_pilon:196369..197367- (Gracilaria gracilis GNS1m male)
ATGTGCAACCCCGTCGTGTCCAAGCCGCGCGCGTTGCGCGCGGGCGTGCG
CGCGTCCGTGTCGGCCGCCGCGCTGATCTCCGCCGCGCTGCTGCTGCTGC
TCGCGCTGCTGGTCACGCGCGCGCCGTCGCTGTACGGCGCCGCCTCGTCC
GCCGCGCGCTTCGACGCCATCGGCACGCCGGTGCGCCACGACTGGCCGTC
TTCCTCGCGCGCGGCGCGCGCCGACGACGACGAGTGCGCGCCGCTGTTCA
AAAAGCTGGCGACGCACGGCATGCTATGCGGCGCGCGTGCGCGCGCACGC
AGCTGCAAGCGCCACCCGGATTGGAAGTCGCTCAAGCTGGGCGCCGTGTG
GTTGTTCTCGCAGTTCGGGCAGGACGCGTATCTGTTCACGCGCCACTTCA
CGCACCTGCGGCGGCCGGGCGTGTACGTGGACGTAGCGTCCAACGCGCCG
AAGCGGCTTTCAAACTCGTTTTTCTTCGACCGCTGCCTGCGCTGGAAGGG
CGTGTGCGTGGAGGCGAACGGCATGTACCACGAGCCGACGTTCCGCGAGC
GTTCTTGCTTGCTGGTGCCCACGTGCGCGGGCGCCACGGACGGCGAGCGC
GTGTCGTTCGTGCTGGACGGCGAGCTGGGCGGCGTGGCGGGCAAGTCGTA
CAAGTTTGGAAAGGGCTCCTCCAACCAGACGCGTGTTGACATGCGATGTA
CGGCGCTGCGGACTGTGCTGCGGCGCGCCGGCGTGCGACGCGTGGACTTT
CTCAGCTTGGACGTGGAGGGCCACGAGCTGCAGGTGCTCAAGGGCGTGGA
TTGGCACACGACGCGTATTGACGTGATCAGCGTAGAGGTGACGCCTAGCT
TTGACGATGTGCAGCGTATGCTGCTGGGGCTGGGCTACGTGCGCCATGTG
GTGGGCAAGGAGAGCGAGATCTCGCCGATTGGAAAGGGCTTTCTGGGCAT
GGACGCCATCTTCCTGCGTTCGGATGTGACACTGGGTGAGCCCAATTGA
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Coding sequence (CDS) from alignment at tig00000851_pilon:196369..197367-

>Ggra3276.t1 ID=Ggra3276.t1|Name=Ggra3276.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00000851_pilon:196369..197367- (Gracilaria gracilis GNS1m male)
ATGTGCAACCCCGTCGTGTCCAAGCCGCGCGCGTTGCGCGCGGGCGTGCG
CGCGTCCGTGTCGGCCGCCGCGCTGATCTCCGCCGCGCTGCTGCTGCTGC
TCGCGCTGCTGGTCACGCGCGCGCCGTCGCTGTACGGCGCCGCCTCGTCC
GCCGCGCGCTTCGACGCCATCGGCACGCCGGTGCGCCACGACTGGCCGTC
TTCCTCGCGCGCGGCGCGCGCCGACGACGACGAGTGCGCGCCGCTGTTCA
AAAAGCTGGCGACGCACGGCATGCTATGCGGCGCGCGTGCGCGCGCACGC
AGCTGCAAGCGCCACCCGGATTGGAAGTCGCTCAAGCTGGGCGCCGTGTG
GTTGTTCTCGCAGTTCGGGCAGGACGCGTATCTGTTCACGCGCCACTTCA
CGCACCTGCGGCGGCCGGGCGTGTACGTGGACGTAGCGTCCAACGCGCCG
AAGCGGCTTTCAAACTCGTTTTTCTTCGACCGCTGCCTGCGCTGGAAGGG
CGTGTGCGTGGAGGCGAACGGCATGTACCACGAGCCGACGTTCCGCGAGC
GTTCTTGCTTGCTGGTGCCCACGTGCGCGGGCGCCACGGACGGCGAGCGC
GTGTCGTTCGTGCTGGACGGCGAGCTGGGCGGCGTGGCGGGCAAGTCGTA
CAAGTTTGGAAAGGGCTCCTCCAACCAGACGCGTGTTGACATGCGATGTA
CGGCGCTGCGGACTGTGCTGCGGCGCGCCGGCGTGCGACGCGTGGACTTT
CTCAGCTTGGACGTGGAGGGCCACGAGCTGCAGGTGCTCAAGGGCGTGGA
TTGGCACACGACGCGTATTGACGTGATCAGCGTAGAGGTGACGCCTAGCT
TTGACGATGTGCAGCGTATGCTGCTGGGGCTGGGCTACGTGCGCCATGTG
GTGGGCAAGGAGAGCGAGATCTCGCCGATTGGAAAGGGCTTTCTGGGCAT
GGACGCCATCTTCCTGCGTTCGGATGTGACACTGGGTGAGCCCAATTGA
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