Ggra3275.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3275.t1
Unique NameGgra3275.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:194618..196120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ315CT
Preferred nameFTR1
PFAMsFTR1
Max annot lvl2759|Eukaryota
KEGG koko:K07243
KEGG TC2.A.108.1,2.A.108.2
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0008324,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010106,GO:0015075,GO:0015093,GO:0015318,GO:0015684,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0032991,GO:0033212,GO:0033215,GO:0033554,GO:0033573,GO:0034220,GO:0034755,GO:0042592,GO:0042594,GO:0044425,GO:0044459,GO:0044464,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0061840,GO:0065007,GO:0065008,GO:0070627,GO:0070838,GO:0071496,GO:0071944,GO:0072509,GO:0072511,GO:0097286,GO:0098655,GO:0098656,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098707,GO:0098711,GO:0098739,GO:0098771,GO:0098796,GO:0098797,GO:0099587,GO:1901684,GO:1902494,GO:1902495,GO:1903874,GO:1905862,GO:1990204,GO:1990351
Evalue2.79e-83
EggNOG OGsCOG0672@1|root,2QQWE@2759|Eukaryota
Descriptionhigh-affinity ferrous iron transmembrane transporter activity
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3275Ggra3275Gracilaria gracilis GNS1m malegenetig00000851_pilon 194618..196120 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3275.t1.start1Ggra3275.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 194618..194620 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3275.t1.CDS1Ggra3275.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 194618..196120 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3275.t1.exon1Ggra3275.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 194618..196120 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3275.t1.stop1Ggra3275.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 196118..196120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3275.t1Ggra3275.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 194618..196120 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3275.t1 ID=Ggra3275.t1|Name=Ggra3275.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp
MGVFSIPAFFIVLREVLEACLVVGIVLAYINKIGATQYKRYVWWGAIGGI
VVSLAVGLAFGIVVWTRGDQLFKGATEKIFEGVAFLVAASLLTWMIIWMM
VLGKNLRSKLENDVDEIVADDGKSPVQRKLAIFLMVFVQVLREGIETVIF
LIGTANADDSGGWRAIPLPGILAIIVGIAASYLVFRGLLQLNILKFFLVS
SLVLMAFAAGLVSHAFHELQEVDWFGPWKPSEERDWYNAVMWSTKSCCHD
KTNEFFAMLRALFGYQDTPTFVEWATYFGYWLIVIVVFICINWQLIRASR
SKMLSLSKQLSLWALLFTFVGFVFTLMNITWMGVTTMTLGLTLSVLTVLS
LFDSTLRLLKPLKKPRRSVLLVCGVGWALLTAFMFVLHLVQMQCEGREDQ
CSMKMFFFFGLIFDPDFVILGRQEKSWPAIAVLSVSIVLTVYFFGALAFT
VIMTSFNVAGEGDYVGDDGVVKVAEEDVAENAGEEEVSAQHEALPEAVAV
*
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spliced messenger RNA

>Ggra3275.t1 ID=Ggra3275.t1|Name=Ggra3275.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000851_pilon:194618..196120+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTCTTTTCCATCCCGGCATTCTTCATCGTATTGCGAGAAGTGCT
GGAGGCATGTCTGGTGGTGGGTATTGTGTTGGCTTATATCAACAAGATCG
GAGCCACTCAATACAAGCGCTACGTATGGTGGGGTGCTATTGGTGGTATT
GTCGTCTCCCTCGCAGTCGGACTTGCATTCGGAATCGTGGTATGGACTCG
AGGAGATCAATTGTTCAAGGGTGCTACCGAAAAGATTTTCGAGGGAGTTG
CCTTCTTAGTGGCAGCTTCTTTGCTCACTTGGATGATTATCTGGATGATG
GTTCTTGGTAAGAACTTGCGCTCCAAACTCGAGAACGATGTCGATGAAAT
TGTGGCCGACGACGGCAAGAGCCCCGTTCAACGCAAGCTCGCCATCTTTT
TGATGGTGTTCGTACAGGTTCTTAGGGAAGGAATTGAGACTGTTATCTTC
CTGATTGGAACTGCCAATGCTGACGATAGCGGTGGCTGGCGCGCAATCCC
GCTACCGGGTATTCTCGCCATCATTGTTGGCATTGCCGCCTCGTATCTTG
TGTTCCGAGGGTTGCTTCAGTTGAACATTCTCAAGTTCTTCTTGGTGTCT
AGCCTCGTGCTGATGGCGTTCGCGGCCGGCCTTGTGAGCCACGCGTTCCA
TGAACTGCAGGAAGTGGACTGGTTCGGGCCGTGGAAACCGTCAGAGGAGC
GTGATTGGTACAATGCGGTTATGTGGTCTACAAAGTCTTGCTGCCATGAC
AAGACGAATGAGTTCTTCGCTATGCTGCGCGCCTTGTTCGGCTATCAGGA
TACACCGACGTTTGTGGAATGGGCTACGTACTTTGGCTACTGGTTGATCG
TTATCGTAGTGTTCATCTGCATTAACTGGCAGCTGATTCGTGCTTCGCGA
TCCAAGATGCTGTCTCTATCGAAACAGCTTTCTCTGTGGGCGTTGCTGTT
CACGTTTGTGGGATTTGTGTTCACGTTGATGAACATAACTTGGATGGGCG
TGACCACTATGACTCTGGGGTTGACCCTATCGGTTTTGACCGTGCTGTCG
CTGTTCGACAGCACGCTGCGCCTACTCAAGCCGCTGAAGAAGCCGCGTCG
CTCGGTTCTGCTGGTGTGCGGCGTGGGCTGGGCGCTGCTGACGGCGTTCA
TGTTCGTGCTGCACCTGGTGCAGATGCAATGCGAGGGCAGGGAGGACCAA
TGCAGCATGAAGATGTTCTTCTTCTTCGGGCTGATTTTCGACCCGGATTT
CGTGATTCTCGGGCGACAGGAAAAGTCGTGGCCGGCGATTGCGGTGCTGT
CCGTGTCGATTGTGCTGACGGTGTACTTCTTCGGCGCGCTGGCTTTCACG
GTGATTATGACTTCGTTCAACGTTGCCGGCGAGGGTGACTACGTTGGCGA
CGACGGCGTGGTGAAGGTGGCCGAAGAAGACGTGGCCGAGAATGCGGGTG
AGGAGGAGGTGTCCGCGCAGCACGAGGCACTGCCCGAGGCGGTTGCTGTG
TAA
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protein sequence of Ggra3275.t1

>Ggra3275.t1 ID=Ggra3275.t1|Name=Ggra3275.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=501bp
MGVFSIPAFFIVLREVLEACLVVGIVLAYINKIGATQYKRYVWWGAIGGI
VVSLAVGLAFGIVVWTRGDQLFKGATEKIFEGVAFLVAASLLTWMIIWMM
VLGKNLRSKLENDVDEIVADDGKSPVQRKLAIFLMVFVQVLREGIETVIF
LIGTANADDSGGWRAIPLPGILAIIVGIAASYLVFRGLLQLNILKFFLVS
SLVLMAFAAGLVSHAFHELQEVDWFGPWKPSEERDWYNAVMWSTKSCCHD
KTNEFFAMLRALFGYQDTPTFVEWATYFGYWLIVIVVFICINWQLIRASR
SKMLSLSKQLSLWALLFTFVGFVFTLMNITWMGVTTMTLGLTLSVLTVLS
LFDSTLRLLKPLKKPRRSVLLVCGVGWALLTAFMFVLHLVQMQCEGREDQ
CSMKMFFFFGLIFDPDFVILGRQEKSWPAIAVLSVSIVLTVYFFGALAFT
VIMTSFNVAGEGDYVGDDGVVKVAEEDVAENAGEEEVSAQHEALPEAVAV
*
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mRNA from alignment at tig00000851_pilon:194618..196120+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3275.t1 ID=Ggra3275.t1|Name=Ggra3275.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000851_pilon:194618..196120+ (Gracilaria gracilis GNS1m male)
ATGGGTGTCTTTTCCATCCCGGCATTCTTCATCGTATTGCGAGAAGTGCT
GGAGGCATGTCTGGTGGTGGGTATTGTGTTGGCTTATATCAACAAGATCG
GAGCCACTCAATACAAGCGCTACGTATGGTGGGGTGCTATTGGTGGTATT
GTCGTCTCCCTCGCAGTCGGACTTGCATTCGGAATCGTGGTATGGACTCG
AGGAGATCAATTGTTCAAGGGTGCTACCGAAAAGATTTTCGAGGGAGTTG
CCTTCTTAGTGGCAGCTTCTTTGCTCACTTGGATGATTATCTGGATGATG
GTTCTTGGTAAGAACTTGCGCTCCAAACTCGAGAACGATGTCGATGAAAT
TGTGGCCGACGACGGCAAGAGCCCCGTTCAACGCAAGCTCGCCATCTTTT
TGATGGTGTTCGTACAGGTTCTTAGGGAAGGAATTGAGACTGTTATCTTC
CTGATTGGAACTGCCAATGCTGACGATAGCGGTGGCTGGCGCGCAATCCC
GCTACCGGGTATTCTCGCCATCATTGTTGGCATTGCCGCCTCGTATCTTG
TGTTCCGAGGGTTGCTTCAGTTGAACATTCTCAAGTTCTTCTTGGTGTCT
AGCCTCGTGCTGATGGCGTTCGCGGCCGGCCTTGTGAGCCACGCGTTCCA
TGAACTGCAGGAAGTGGACTGGTTCGGGCCGTGGAAACCGTCAGAGGAGC
GTGATTGGTACAATGCGGTTATGTGGTCTACAAAGTCTTGCTGCCATGAC
AAGACGAATGAGTTCTTCGCTATGCTGCGCGCCTTGTTCGGCTATCAGGA
TACACCGACGTTTGTGGAATGGGCTACGTACTTTGGCTACTGGTTGATCG
TTATCGTAGTGTTCATCTGCATTAACTGGCAGCTGATTCGTGCTTCGCGA
TCCAAGATGCTGTCTCTATCGAAACAGCTTTCTCTGTGGGCGTTGCTGTT
CACGTTTGTGGGATTTGTGTTCACGTTGATGAACATAACTTGGATGGGCG
TGACCACTATGACTCTGGGGTTGACCCTATCGGTTTTGACCGTGCTGTCG
CTGTTCGACAGCACGCTGCGCCTACTCAAGCCGCTGAAGAAGCCGCGTCG
CTCGGTTCTGCTGGTGTGCGGCGTGGGCTGGGCGCTGCTGACGGCGTTCA
TGTTCGTGCTGCACCTGGTGCAGATGCAATGCGAGGGCAGGGAGGACCAA
TGCAGCATGAAGATGTTCTTCTTCTTCGGGCTGATTTTCGACCCGGATTT
CGTGATTCTCGGGCGACAGGAAAAGTCGTGGCCGGCGATTGCGGTGCTGT
CCGTGTCGATTGTGCTGACGGTGTACTTCTTCGGCGCGCTGGCTTTCACG
GTGATTATGACTTCGTTCAACGTTGCCGGCGAGGGTGACTACGTTGGCGA
CGACGGCGTGGTGAAGGTGGCCGAAGAAGACGTGGCCGAGAATGCGGGTG
AGGAGGAGGTGTCCGCGCAGCACGAGGCACTGCCCGAGGCGGTTGCTGTG
TAA
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Coding sequence (CDS) from alignment at tig00000851_pilon:194618..196120+

>Ggra3275.t1 ID=Ggra3275.t1|Name=Ggra3275.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1503bp|location=Sequence derived from alignment at tig00000851_pilon:194618..196120+ (Gracilaria gracilis GNS1m male)
ATGGGTGTCTTTTCCATCCCGGCATTCTTCATCGTATTGCGAGAAGTGCT
GGAGGCATGTCTGGTGGTGGGTATTGTGTTGGCTTATATCAACAAGATCG
GAGCCACTCAATACAAGCGCTACGTATGGTGGGGTGCTATTGGTGGTATT
GTCGTCTCCCTCGCAGTCGGACTTGCATTCGGAATCGTGGTATGGACTCG
AGGAGATCAATTGTTCAAGGGTGCTACCGAAAAGATTTTCGAGGGAGTTG
CCTTCTTAGTGGCAGCTTCTTTGCTCACTTGGATGATTATCTGGATGATG
GTTCTTGGTAAGAACTTGCGCTCCAAACTCGAGAACGATGTCGATGAAAT
TGTGGCCGACGACGGCAAGAGCCCCGTTCAACGCAAGCTCGCCATCTTTT
TGATGGTGTTCGTACAGGTTCTTAGGGAAGGAATTGAGACTGTTATCTTC
CTGATTGGAACTGCCAATGCTGACGATAGCGGTGGCTGGCGCGCAATCCC
GCTACCGGGTATTCTCGCCATCATTGTTGGCATTGCCGCCTCGTATCTTG
TGTTCCGAGGGTTGCTTCAGTTGAACATTCTCAAGTTCTTCTTGGTGTCT
AGCCTCGTGCTGATGGCGTTCGCGGCCGGCCTTGTGAGCCACGCGTTCCA
TGAACTGCAGGAAGTGGACTGGTTCGGGCCGTGGAAACCGTCAGAGGAGC
GTGATTGGTACAATGCGGTTATGTGGTCTACAAAGTCTTGCTGCCATGAC
AAGACGAATGAGTTCTTCGCTATGCTGCGCGCCTTGTTCGGCTATCAGGA
TACACCGACGTTTGTGGAATGGGCTACGTACTTTGGCTACTGGTTGATCG
TTATCGTAGTGTTCATCTGCATTAACTGGCAGCTGATTCGTGCTTCGCGA
TCCAAGATGCTGTCTCTATCGAAACAGCTTTCTCTGTGGGCGTTGCTGTT
CACGTTTGTGGGATTTGTGTTCACGTTGATGAACATAACTTGGATGGGCG
TGACCACTATGACTCTGGGGTTGACCCTATCGGTTTTGACCGTGCTGTCG
CTGTTCGACAGCACGCTGCGCCTACTCAAGCCGCTGAAGAAGCCGCGTCG
CTCGGTTCTGCTGGTGTGCGGCGTGGGCTGGGCGCTGCTGACGGCGTTCA
TGTTCGTGCTGCACCTGGTGCAGATGCAATGCGAGGGCAGGGAGGACCAA
TGCAGCATGAAGATGTTCTTCTTCTTCGGGCTGATTTTCGACCCGGATTT
CGTGATTCTCGGGCGACAGGAAAAGTCGTGGCCGGCGATTGCGGTGCTGT
CCGTGTCGATTGTGCTGACGGTGTACTTCTTCGGCGCGCTGGCTTTCACG
GTGATTATGACTTCGTTCAACGTTGCCGGCGAGGGTGACTACGTTGGCGA
CGACGGCGTGGTGAAGGTGGCCGAAGAAGACGTGGCCGAGAATGCGGGTG
AGGAGGAGGTGTCCGCGCAGCACGAGGCACTGCCCGAGGCGGTTGCTGTG
TAA
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