Ggra3270.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3270.t1
Unique NameGgra3270.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:177532..178491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LM92
PFAMsCBM_1,LPMO_10
Max annot lvl2759|Eukaryota
Evalue1.61e-22
EggNOG OGs2CZUJ@1|root,2SBQR@2759|Eukaryota
DescriptionFungal-type cellulose-binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3270Ggra3270Gracilaria gracilis GNS1m malegenetig00000851_pilon 177532..178491 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3270.t1.stop1Ggra3270.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 177532..177534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3270.t1.CDS1Ggra3270.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 177532..178491 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3270.t1.exon1Ggra3270.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 177532..178491 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3270.t1.start1Ggra3270.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 178489..178491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3270.t1Ggra3270.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 177532..178491 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3270.t1 ID=Ggra3270.t1|Name=Ggra3270.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MCTPRQRAAYSSVKCGYDLDIPNMATDHCAHCLNGGTVATVKANLPPNGW
SVYEPTVDFFGTAGRAGLCGDPKGQVDHMIGGAFMPYSSVPIVQNWQKGA
QVDFVAEIDTNHNGYFEFFLCNLDACGKPDLDASCFANNNCVKLNRVPHP
SCENPSAATIHECGPIDAAYPGRWYVPCRNTGHVGVHIVGGESGTMRYQL
PADVECNHCVVQWYWATANSCAPRGFKDYFVNYGFPFGTTCESDGGGRGT
YRADMAECGGDLVPEEFWSCADVQITSDGTTAGPVQGFSNPVSDVSMSID
DEMETLEERTPAPSDPEEF*
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spliced messenger RNA

>Ggra3270.t1 ID=Ggra3270.t1|Name=Ggra3270.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000851_pilon:177532..178491- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCACCCCCCGGCAACGGGCGGCATACAGCTCTGTCAAGTGTGGCTA
CGATCTCGACATTCCCAATATGGCTACCGATCACTGCGCACATTGTCTCA
ACGGCGGAACAGTTGCAACCGTCAAGGCCAACCTTCCCCCCAACGGGTGG
TCTGTTTACGAACCTACTGTGGATTTCTTCGGCACTGCTGGCCGTGCCGG
CCTTTGTGGAGATCCAAAGGGGCAAGTGGATCATATGATTGGTGGCGCTT
TCATGCCGTATTCAAGCGTCCCAATTGTTCAGAACTGGCAAAAAGGGGCT
CAAGTAGACTTTGTCGCCGAAATTGATACCAACCACAACGGCTATTTTGA
GTTCTTCCTGTGCAACCTTGACGCCTGTGGAAAACCGGACCTGGATGCCA
GCTGTTTCGCGAACAATAACTGCGTGAAGCTCAACCGAGTGCCTCACCCC
TCCTGCGAGAATCCGTCTGCTGCCACCATCCATGAATGTGGACCCATTGA
CGCCGCCTACCCTGGGCGCTGGTATGTTCCGTGCCGCAACACTGGTCACG
TTGGCGTCCACATTGTGGGTGGAGAGTCCGGTACCATGCGTTACCAACTG
CCGGCTGATGTTGAGTGCAATCACTGCGTCGTGCAGTGGTACTGGGCCAC
TGCAAATTCTTGTGCTCCGAGAGGCTTCAAGGACTATTTTGTCAACTACG
GCTTTCCTTTCGGTACCACGTGTGAATCTGATGGCGGCGGTCGAGGAACT
TATCGAGCCGACATGGCAGAGTGTGGAGGTGACTTGGTGCCAGAAGAATT
CTGGTCATGTGCCGATGTGCAGATTACCTCAGATGGCACAACGGCCGGTC
CGGTGCAGGGATTTTCCAATCCCGTGAGCGATGTAAGCATGTCTATTGAC
GATGAAATGGAAACCCTTGAAGAAAGAACCCCTGCTCCATCAGACCCCGA
AGAATTTTGA
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protein sequence of Ggra3270.t1

>Ggra3270.t1 ID=Ggra3270.t1|Name=Ggra3270.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MCTPRQRAAYSSVKCGYDLDIPNMATDHCAHCLNGGTVATVKANLPPNGW
SVYEPTVDFFGTAGRAGLCGDPKGQVDHMIGGAFMPYSSVPIVQNWQKGA
QVDFVAEIDTNHNGYFEFFLCNLDACGKPDLDASCFANNNCVKLNRVPHP
SCENPSAATIHECGPIDAAYPGRWYVPCRNTGHVGVHIVGGESGTMRYQL
PADVECNHCVVQWYWATANSCAPRGFKDYFVNYGFPFGTTCESDGGGRGT
YRADMAECGGDLVPEEFWSCADVQITSDGTTAGPVQGFSNPVSDVSMSID
DEMETLEERTPAPSDPEEF*
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mRNA from alignment at tig00000851_pilon:177532..178491-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3270.t1 ID=Ggra3270.t1|Name=Ggra3270.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000851_pilon:177532..178491- (Gracilaria gracilis GNS1m male)
ATGTGCACCCCCCGGCAACGGGCGGCATACAGCTCTGTCAAGTGTGGCTA
CGATCTCGACATTCCCAATATGGCTACCGATCACTGCGCACATTGTCTCA
ACGGCGGAACAGTTGCAACCGTCAAGGCCAACCTTCCCCCCAACGGGTGG
TCTGTTTACGAACCTACTGTGGATTTCTTCGGCACTGCTGGCCGTGCCGG
CCTTTGTGGAGATCCAAAGGGGCAAGTGGATCATATGATTGGTGGCGCTT
TCATGCCGTATTCAAGCGTCCCAATTGTTCAGAACTGGCAAAAAGGGGCT
CAAGTAGACTTTGTCGCCGAAATTGATACCAACCACAACGGCTATTTTGA
GTTCTTCCTGTGCAACCTTGACGCCTGTGGAAAACCGGACCTGGATGCCA
GCTGTTTCGCGAACAATAACTGCGTGAAGCTCAACCGAGTGCCTCACCCC
TCCTGCGAGAATCCGTCTGCTGCCACCATCCATGAATGTGGACCCATTGA
CGCCGCCTACCCTGGGCGCTGGTATGTTCCGTGCCGCAACACTGGTCACG
TTGGCGTCCACATTGTGGGTGGAGAGTCCGGTACCATGCGTTACCAACTG
CCGGCTGATGTTGAGTGCAATCACTGCGTCGTGCAGTGGTACTGGGCCAC
TGCAAATTCTTGTGCTCCGAGAGGCTTCAAGGACTATTTTGTCAACTACG
GCTTTCCTTTCGGTACCACGTGTGAATCTGATGGCGGCGGTCGAGGAACT
TATCGAGCCGACATGGCAGAGTGTGGAGGTGACTTGGTGCCAGAAGAATT
CTGGTCATGTGCCGATGTGCAGATTACCTCAGATGGCACAACGGCCGGTC
CGGTGCAGGGATTTTCCAATCCCGTGAGCGATGTAAGCATGTCTATTGAC
GATGAAATGGAAACCCTTGAAGAAAGAACCCCTGCTCCATCAGACCCCGA
AGAATTTTGA
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Coding sequence (CDS) from alignment at tig00000851_pilon:177532..178491-

>Ggra3270.t1 ID=Ggra3270.t1|Name=Ggra3270.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000851_pilon:177532..178491- (Gracilaria gracilis GNS1m male)
ATGTGCACCCCCCGGCAACGGGCGGCATACAGCTCTGTCAAGTGTGGCTA
CGATCTCGACATTCCCAATATGGCTACCGATCACTGCGCACATTGTCTCA
ACGGCGGAACAGTTGCAACCGTCAAGGCCAACCTTCCCCCCAACGGGTGG
TCTGTTTACGAACCTACTGTGGATTTCTTCGGCACTGCTGGCCGTGCCGG
CCTTTGTGGAGATCCAAAGGGGCAAGTGGATCATATGATTGGTGGCGCTT
TCATGCCGTATTCAAGCGTCCCAATTGTTCAGAACTGGCAAAAAGGGGCT
CAAGTAGACTTTGTCGCCGAAATTGATACCAACCACAACGGCTATTTTGA
GTTCTTCCTGTGCAACCTTGACGCCTGTGGAAAACCGGACCTGGATGCCA
GCTGTTTCGCGAACAATAACTGCGTGAAGCTCAACCGAGTGCCTCACCCC
TCCTGCGAGAATCCGTCTGCTGCCACCATCCATGAATGTGGACCCATTGA
CGCCGCCTACCCTGGGCGCTGGTATGTTCCGTGCCGCAACACTGGTCACG
TTGGCGTCCACATTGTGGGTGGAGAGTCCGGTACCATGCGTTACCAACTG
CCGGCTGATGTTGAGTGCAATCACTGCGTCGTGCAGTGGTACTGGGCCAC
TGCAAATTCTTGTGCTCCGAGAGGCTTCAAGGACTATTTTGTCAACTACG
GCTTTCCTTTCGGTACCACGTGTGAATCTGATGGCGGCGGTCGAGGAACT
TATCGAGCCGACATGGCAGAGTGTGGAGGTGACTTGGTGCCAGAAGAATT
CTGGTCATGTGCCGATGTGCAGATTACCTCAGATGGCACAACGGCCGGTC
CGGTGCAGGGATTTTCCAATCCCGTGAGCGATGTAAGCATGTCTATTGAC
GATGAAATGGAAACCCTTGAAGAAAGAACCCCTGCTCCATCAGACCCCGA
AGAATTTTGA
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