Ggra3268.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3268.t1
Unique NameGgra3268.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length284
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:170768..171619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog981085.XP_010113323.1
PFAMsperoxidase
Max annot lvl35493|Streptophyta
KEGG rclassRC00092
KEGG koko:K00434
KEGG ReactionR00644
KEGG Pathwayko00053,ko00480,map00053,map00480
GOsGO:0000302,GO:0003674,GO:0003824,GO:0004130,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005777,GO:0005778,GO:0005911,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009636,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016020,GO:0016209,GO:0016491,GO:0016684,GO:0016688,GO:0016999,GO:0017001,GO:0017144,GO:0030054,GO:0031090,GO:0031903,GO:0031967,GO:0031975,GO:0033554,GO:0034599,GO:0042221,GO:0042579,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055044,GO:0055114,GO:0070887,GO:0072593,GO:0097237,GO:0098588,GO:0098754,GO:0098805,GO:0098869,GO:1901700,GO:1990748
Evalue4.87e-11
EggNOG OGsCOG0685@1|root,2QR1E@2759|Eukaryota,37RD2@33090|Viridiplantae,3G8JX@35493|Streptophyta,4JFN8@91835|fabids
EC1.11.1.11
DescriptionBelongs to the peroxidase family
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3268Ggra3268Gracilaria gracilis GNS1m malegenetig00000851_pilon 170768..171619 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3268.t1.stop1Ggra3268.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 170768..170770 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3268.t1.CDS1Ggra3268.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 170768..171619 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3268.t1.exon1Ggra3268.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 170768..171619 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3268.t1.start1Ggra3268.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 171617..171619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3268.t1Ggra3268.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 170768..171619 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3268.t1 ID=Ggra3268.t1|Name=Ggra3268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=284bp
MRVRLLLVVAFTATLAWYARAHARVKCSSHDDVRAILRRRLRRNQSLIPA
FVRTAFHDCIAASDKQPASGCNGSIRLHAERYNALNEAVRPVLQLLDGVL
RARKCVSYADAIMIGTEEALVLAQGPDLRERLVRYRADVHEVDTEPLPDI
GMGLSEMRRFFARRKLSKRTMVASVVGGHSLGHFLRSGRLEPFTPSLHVF
DNQFAVNLQQKVNNRVNLDGFNTLPSDDVLLTDKRIVSLIQLYAGVNGKD
GGVDRGIGLRLLRTDFARFMIRLSRLRGRRLTD*
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spliced messenger RNA

>Ggra3268.t1 ID=Ggra3268.t1|Name=Ggra3268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000851_pilon:170768..171619- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTACGACTGCTGCTCGTCGTGGCCTTCACGGCCACGCTCGCCTG
GTACGCCCGCGCGCACGCGCGGGTCAAATGCTCCTCCCACGACGACGTAC
GCGCCATACTGCGCAGAAGGCTGCGTCGAAACCAGTCGCTGATCCCTGCG
TTTGTGCGCACCGCCTTCCACGACTGCATCGCCGCCAGCGACAAGCAGCC
GGCATCGGGCTGCAACGGCAGCATTCGTCTGCACGCCGAGCGTTACAATG
CGCTCAACGAGGCGGTGCGCCCTGTGCTCCAGCTGCTAGATGGCGTGCTA
CGCGCGCGCAAGTGCGTGTCGTACGCGGACGCGATTATGATCGGCACGGA
AGAGGCGCTTGTGTTGGCACAGGGGCCGGATCTGAGGGAAAGGTTGGTGA
GGTATCGCGCAGATGTGCATGAAGTGGATACTGAGCCGTTGCCGGATATT
GGAATGGGGCTATCAGAGATGAGGCGGTTCTTCGCGCGAAGAAAGCTGTC
TAAAAGAACGATGGTAGCTAGTGTGGTGGGCGGCCATTCGCTGGGACATT
TTTTGAGGTCGGGGCGTTTGGAACCGTTCACGCCTTCGTTGCATGTGTTC
GATAACCAGTTTGCGGTCAACTTGCAGCAGAAGGTGAACAACCGGGTTAA
CTTGGATGGCTTTAACACTCTGCCTTCCGACGACGTGCTGCTGACTGACA
AACGCATCGTTAGTTTAATTCAATTATACGCGGGCGTGAATGGGAAGGAC
GGCGGCGTAGATAGGGGTATAGGGCTTAGGTTGTTGCGTACGGACTTCGC
GCGCTTTATGATTAGGCTATCGAGGTTGCGCGGGAGGCGGTTGACAGACT
GA
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protein sequence of Ggra3268.t1

>Ggra3268.t1 ID=Ggra3268.t1|Name=Ggra3268.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=284bp
MRVRLLLVVAFTATLAWYARAHARVKCSSHDDVRAILRRRLRRNQSLIPA
FVRTAFHDCIAASDKQPASGCNGSIRLHAERYNALNEAVRPVLQLLDGVL
RARKCVSYADAIMIGTEEALVLAQGPDLRERLVRYRADVHEVDTEPLPDI
GMGLSEMRRFFARRKLSKRTMVASVVGGHSLGHFLRSGRLEPFTPSLHVF
DNQFAVNLQQKVNNRVNLDGFNTLPSDDVLLTDKRIVSLIQLYAGVNGKD
GGVDRGIGLRLLRTDFARFMIRLSRLRGRRLTD*
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mRNA from alignment at tig00000851_pilon:170768..171619-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3268.t1 ID=Ggra3268.t1|Name=Ggra3268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000851_pilon:170768..171619- (Gracilaria gracilis GNS1m male)
ATGCGCGTACGACTGCTGCTCGTCGTGGCCTTCACGGCCACGCTCGCCTG
GTACGCCCGCGCGCACGCGCGGGTCAAATGCTCCTCCCACGACGACGTAC
GCGCCATACTGCGCAGAAGGCTGCGTCGAAACCAGTCGCTGATCCCTGCG
TTTGTGCGCACCGCCTTCCACGACTGCATCGCCGCCAGCGACAAGCAGCC
GGCATCGGGCTGCAACGGCAGCATTCGTCTGCACGCCGAGCGTTACAATG
CGCTCAACGAGGCGGTGCGCCCTGTGCTCCAGCTGCTAGATGGCGTGCTA
CGCGCGCGCAAGTGCGTGTCGTACGCGGACGCGATTATGATCGGCACGGA
AGAGGCGCTTGTGTTGGCACAGGGGCCGGATCTGAGGGAAAGGTTGGTGA
GGTATCGCGCAGATGTGCATGAAGTGGATACTGAGCCGTTGCCGGATATT
GGAATGGGGCTATCAGAGATGAGGCGGTTCTTCGCGCGAAGAAAGCTGTC
TAAAAGAACGATGGTAGCTAGTGTGGTGGGCGGCCATTCGCTGGGACATT
TTTTGAGGTCGGGGCGTTTGGAACCGTTCACGCCTTCGTTGCATGTGTTC
GATAACCAGTTTGCGGTCAACTTGCAGCAGAAGGTGAACAACCGGGTTAA
CTTGGATGGCTTTAACACTCTGCCTTCCGACGACGTGCTGCTGACTGACA
AACGCATCGTTAGTTTAATTCAATTATACGCGGGCGTGAATGGGAAGGAC
GGCGGCGTAGATAGGGGTATAGGGCTTAGGTTGTTGCGTACGGACTTCGC
GCGCTTTATGATTAGGCTATCGAGGTTGCGCGGGAGGCGGTTGACAGACT
GA
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Coding sequence (CDS) from alignment at tig00000851_pilon:170768..171619-

>Ggra3268.t1 ID=Ggra3268.t1|Name=Ggra3268.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00000851_pilon:170768..171619- (Gracilaria gracilis GNS1m male)
ATGCGCGTACGACTGCTGCTCGTCGTGGCCTTCACGGCCACGCTCGCCTG
GTACGCCCGCGCGCACGCGCGGGTCAAATGCTCCTCCCACGACGACGTAC
GCGCCATACTGCGCAGAAGGCTGCGTCGAAACCAGTCGCTGATCCCTGCG
TTTGTGCGCACCGCCTTCCACGACTGCATCGCCGCCAGCGACAAGCAGCC
GGCATCGGGCTGCAACGGCAGCATTCGTCTGCACGCCGAGCGTTACAATG
CGCTCAACGAGGCGGTGCGCCCTGTGCTCCAGCTGCTAGATGGCGTGCTA
CGCGCGCGCAAGTGCGTGTCGTACGCGGACGCGATTATGATCGGCACGGA
AGAGGCGCTTGTGTTGGCACAGGGGCCGGATCTGAGGGAAAGGTTGGTGA
GGTATCGCGCAGATGTGCATGAAGTGGATACTGAGCCGTTGCCGGATATT
GGAATGGGGCTATCAGAGATGAGGCGGTTCTTCGCGCGAAGAAAGCTGTC
TAAAAGAACGATGGTAGCTAGTGTGGTGGGCGGCCATTCGCTGGGACATT
TTTTGAGGTCGGGGCGTTTGGAACCGTTCACGCCTTCGTTGCATGTGTTC
GATAACCAGTTTGCGGTCAACTTGCAGCAGAAGGTGAACAACCGGGTTAA
CTTGGATGGCTTTAACACTCTGCCTTCCGACGACGTGCTGCTGACTGACA
AACGCATCGTTAGTTTAATTCAATTATACGCGGGCGTGAATGGGAAGGAC
GGCGGCGTAGATAGGGGTATAGGGCTTAGGTTGTTGCGTACGGACTTCGC
GCGCTTTATGATTAGGCTATCGAGGTTGCGCGGGAGGCGGTTGACAGACT
GA
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