Ggra3267.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3267.t1
Unique Name	Ggra3267.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	545

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000851_pilon	contig	tig00000851_pilon:166375..168009 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708950.1
PFAMs	DUF563
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00005,RC00059
KEGG ko	ko:K18134
KEGG Reaction	R09304,R09676
KEGG Pathway	ko00514,map00514
Evalue	1.94e-09
EggNOG OGs	29MVY@1\|root,2RV66@2759\|Eukaryota
EC	2.4.1.255
Description	Protein of unknown function (DUF563)
COG category	S
CAZy	GT41
BRITE	ko00000,ko00001,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3267	Ggra3267	Gracilaria gracilis GNS1m male	gene	tig00000851_pilon 166375..168009 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3267.t1.start1	Ggra3267.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000851_pilon 166375..166377 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3267.t1.CDS1	Ggra3267.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000851_pilon 166375..168009 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3267.t1.exon1	Ggra3267.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000851_pilon 166375..168009 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3267.t1.stop1	Ggra3267.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000851_pilon 168007..168009 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3267.t1	Ggra3267.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000851_pilon 166375..168009 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000851_pilon:166375..168009+
coding sequence from alignment at tig00000851_pilon:166375..168009+

mRNA sequence

>Ggra3267.t1 ID=Ggra3267.t1|Name=Ggra3267.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=545bp
MRTPLKSFKTYFSRNHLPVCVFLFLCSATFLHSHNVAIEAISEIPNSDDT
CILVGINPGADDLWQFSARSLCLSSNICFDPKNPGAVLYHSSDLSKTKCH
IYDSDFTRTSGKFPEVAILNATKQTCQSFQHQFVICAHGTGLTRAMPVCP
KVQKMSSRVGDLVRWLDHPTLVVPDYAFSKNIYHYLNPIADLARTVEHLP
ELEMRGSRRGAKRKAPYGKWKSETKNINIIFQGLRRVPLAHLWKQQLLEL
IIRQRMLKRGINVNLFFMEDFSKRSSNVCLRNAVLLGRRGHYNVWPFPNK
TEVPLHGFSVPLDAVRFKQAVYDGLGVNARLPQFPKARGGYSISEPPPFT
VGYAKRDGRRGSDGYYRGGAMRKFFREDEEWFTEMLRNETEAAGAELIII
PPKKREGLQKQVTDIIGVGFLIGIHGANLVNCMFMHPFGVLMEILPKNVT
EECYIAGANSGLKYLRMECSKEVNLLDSGCHPQDFLCKVDPRQRGVDIRR
NQDRKRIRHLVRQGLEHLRSIRTRFPDGIHVKYNPYSTYYDVVE*

spliced messenger RNA

>Ggra3267.t1 ID=Ggra3267.t1|Name=Ggra3267.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1635bp|location=Sequence derived from alignment at tig00000851_pilon:166375..168009+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAACCCCGCTGAAATCGTTCAAAACTTATTTCAGCCGAAATCATCT
TCCGGTATGTGTTTTTCTGTTCCTGTGTTCGGCAACCTTCCTCCATAGCC
ACAATGTTGCTATTGAAGCCATATCAGAAATACCAAACTCTGATGACACC
TGCATATTGGTGGGCATCAATCCTGGTGCTGATGATCTATGGCAATTCAG
CGCCCGTTCTCTGTGTCTTTCTTCAAACATCTGTTTCGACCCCAAGAACC
CGGGCGCGGTTCTTTATCACTCTTCTGATCTTTCGAAAACCAAATGCCAT
ATCTATGACTCCGACTTCACGCGCACATCCGGTAAATTTCCGGAAGTGGC
TATACTGAATGCAACAAAGCAAACCTGCCAAAGTTTCCAACATCAATTCG
TCATTTGTGCACATGGAACTGGACTTACGCGAGCAATGCCTGTCTGTCCA
AAGGTTCAGAAGATGTCATCTAGAGTTGGGGATTTGGTTCGATGGCTTGA
CCATCCTACTCTGGTTGTTCCCGATTATGCGTTTTCGAAGAACATTTACC
ATTACTTGAATCCCATTGCTGATCTAGCACGCACAGTTGAACATTTGCCT
GAACTCGAAATGCGAGGGAGCCGTCGAGGAGCAAAGAGGAAGGCCCCCTA
TGGAAAATGGAAATCTGAAACAAAGAACATCAACATTATCTTTCAGGGGC
TGCGACGTGTTCCTCTGGCCCATCTTTGGAAGCAGCAGCTTCTGGAACTG
ATTATAAGACAACGAATGCTGAAGAGGGGAATTAACGTGAACCTTTTCTT
TATGGAGGACTTTAGCAAACGCTCTTCGAATGTATGCCTCCGAAATGCAG
TTCTACTCGGACGAAGAGGGCATTACAATGTCTGGCCTTTTCCAAACAAA
ACTGAGGTTCCTCTTCATGGGTTTTCAGTTCCCCTGGATGCAGTTCGGTT
TAAACAAGCTGTATATGATGGGCTTGGCGTAAACGCACGTTTACCACAGT
TTCCTAAGGCACGAGGTGGATATTCTATTTCTGAACCCCCTCCGTTCACG
GTTGGATATGCTAAGCGTGATGGGAGACGCGGAAGTGATGGCTATTATCG
TGGAGGTGCCATGAGAAAGTTTTTCAGGGAAGACGAGGAATGGTTTACCG
AAATGTTAAGAAATGAAACCGAAGCTGCCGGGGCAGAATTGATCATCATA
CCACCGAAGAAGAGGGAAGGACTCCAAAAGCAGGTTACAGATATAATTGG
AGTAGGCTTCTTGATCGGTATTCATGGCGCAAACTTGGTTAATTGCATGT
TCATGCATCCTTTCGGTGTGCTAATGGAAATTTTGCCCAAGAATGTTACG
GAGGAGTGTTATATCGCTGGTGCAAATTCGGGTCTGAAATACTTGAGAAT
GGAGTGTAGCAAGGAAGTTAATTTGCTCGACAGCGGATGCCACCCGCAAG
ATTTTCTTTGCAAGGTCGATCCTCGTCAAAGAGGTGTCGATATTCGGAGA
AACCAGGATCGGAAGAGAATCCGACATCTTGTGCGACAGGGGCTTGAACA
TCTGCGATCGATAAGAACACGATTCCCGGATGGAATACATGTGAAATATA
ATCCGTATTCTACGTATTACGATGTAGTAGAATAG

protein sequence of Ggra3267.t1

>Ggra3267.t1 ID=Ggra3267.t1|Name=Ggra3267.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=545bp
MRTPLKSFKTYFSRNHLPVCVFLFLCSATFLHSHNVAIEAISEIPNSDDT
CILVGINPGADDLWQFSARSLCLSSNICFDPKNPGAVLYHSSDLSKTKCH
IYDSDFTRTSGKFPEVAILNATKQTCQSFQHQFVICAHGTGLTRAMPVCP
KVQKMSSRVGDLVRWLDHPTLVVPDYAFSKNIYHYLNPIADLARTVEHLP
ELEMRGSRRGAKRKAPYGKWKSETKNINIIFQGLRRVPLAHLWKQQLLEL
IIRQRMLKRGINVNLFFMEDFSKRSSNVCLRNAVLLGRRGHYNVWPFPNK
TEVPLHGFSVPLDAVRFKQAVYDGLGVNARLPQFPKARGGYSISEPPPFT
VGYAKRDGRRGSDGYYRGGAMRKFFREDEEWFTEMLRNETEAAGAELIII
PPKKREGLQKQVTDIIGVGFLIGIHGANLVNCMFMHPFGVLMEILPKNVT
EECYIAGANSGLKYLRMECSKEVNLLDSGCHPQDFLCKVDPRQRGVDIRR
NQDRKRIRHLVRQGLEHLRSIRTRFPDGIHVKYNPYSTYYDVVE*

mRNA from alignment at tig00000851_pilon:166375..168009+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3267.t1 ID=Ggra3267.t1|Name=Ggra3267.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1635bp|location=Sequence derived from alignment at tig00000851_pilon:166375..168009+ (Gracilaria gracilis GNS1m male)
ATGCGAACCCCGCTGAAATCGTTCAAAACTTATTTCAGCCGAAATCATCT
TCCGGTATGTGTTTTTCTGTTCCTGTGTTCGGCAACCTTCCTCCATAGCC
ACAATGTTGCTATTGAAGCCATATCAGAAATACCAAACTCTGATGACACC
TGCATATTGGTGGGCATCAATCCTGGTGCTGATGATCTATGGCAATTCAG
CGCCCGTTCTCTGTGTCTTTCTTCAAACATCTGTTTCGACCCCAAGAACC
CGGGCGCGGTTCTTTATCACTCTTCTGATCTTTCGAAAACCAAATGCCAT
ATCTATGACTCCGACTTCACGCGCACATCCGGTAAATTTCCGGAAGTGGC
TATACTGAATGCAACAAAGCAAACCTGCCAAAGTTTCCAACATCAATTCG
TCATTTGTGCACATGGAACTGGACTTACGCGAGCAATGCCTGTCTGTCCA
AAGGTTCAGAAGATGTCATCTAGAGTTGGGGATTTGGTTCGATGGCTTGA
CCATCCTACTCTGGTTGTTCCCGATTATGCGTTTTCGAAGAACATTTACC
ATTACTTGAATCCCATTGCTGATCTAGCACGCACAGTTGAACATTTGCCT
GAACTCGAAATGCGAGGGAGCCGTCGAGGAGCAAAGAGGAAGGCCCCCTA
TGGAAAATGGAAATCTGAAACAAAGAACATCAACATTATCTTTCAGGGGC
TGCGACGTGTTCCTCTGGCCCATCTTTGGAAGCAGCAGCTTCTGGAACTG
ATTATAAGACAACGAATGCTGAAGAGGGGAATTAACGTGAACCTTTTCTT
TATGGAGGACTTTAGCAAACGCTCTTCGAATGTATGCCTCCGAAATGCAG
TTCTACTCGGACGAAGAGGGCATTACAATGTCTGGCCTTTTCCAAACAAA
ACTGAGGTTCCTCTTCATGGGTTTTCAGTTCCCCTGGATGCAGTTCGGTT
TAAACAAGCTGTATATGATGGGCTTGGCGTAAACGCACGTTTACCACAGT
TTCCTAAGGCACGAGGTGGATATTCTATTTCTGAACCCCCTCCGTTCACG
GTTGGATATGCTAAGCGTGATGGGAGACGCGGAAGTGATGGCTATTATCG
TGGAGGTGCCATGAGAAAGTTTTTCAGGGAAGACGAGGAATGGTTTACCG
AAATGTTAAGAAATGAAACCGAAGCTGCCGGGGCAGAATTGATCATCATA
CCACCGAAGAAGAGGGAAGGACTCCAAAAGCAGGTTACAGATATAATTGG
AGTAGGCTTCTTGATCGGTATTCATGGCGCAAACTTGGTTAATTGCATGT
TCATGCATCCTTTCGGTGTGCTAATGGAAATTTTGCCCAAGAATGTTACG
GAGGAGTGTTATATCGCTGGTGCAAATTCGGGTCTGAAATACTTGAGAAT
GGAGTGTAGCAAGGAAGTTAATTTGCTCGACAGCGGATGCCACCCGCAAG
ATTTTCTTTGCAAGGTCGATCCTCGTCAAAGAGGTGTCGATATTCGGAGA
AACCAGGATCGGAAGAGAATCCGACATCTTGTGCGACAGGGGCTTGAACA
TCTGCGATCGATAAGAACACGATTCCCGGATGGAATACATGTGAAATATA
ATCCGTATTCTACGTATTACGATGTAGTAGAATAG

Coding sequence (CDS) from alignment at tig00000851_pilon:166375..168009+

>Ggra3267.t1 ID=Ggra3267.t1|Name=Ggra3267.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1635bp|location=Sequence derived from alignment at tig00000851_pilon:166375..168009+ (Gracilaria gracilis GNS1m male)
ATGCGAACCCCGCTGAAATCGTTCAAAACTTATTTCAGCCGAAATCATCT
TCCGGTATGTGTTTTTCTGTTCCTGTGTTCGGCAACCTTCCTCCATAGCC
ACAATGTTGCTATTGAAGCCATATCAGAAATACCAAACTCTGATGACACC
TGCATATTGGTGGGCATCAATCCTGGTGCTGATGATCTATGGCAATTCAG
CGCCCGTTCTCTGTGTCTTTCTTCAAACATCTGTTTCGACCCCAAGAACC
CGGGCGCGGTTCTTTATCACTCTTCTGATCTTTCGAAAACCAAATGCCAT
ATCTATGACTCCGACTTCACGCGCACATCCGGTAAATTTCCGGAAGTGGC
TATACTGAATGCAACAAAGCAAACCTGCCAAAGTTTCCAACATCAATTCG
TCATTTGTGCACATGGAACTGGACTTACGCGAGCAATGCCTGTCTGTCCA
AAGGTTCAGAAGATGTCATCTAGAGTTGGGGATTTGGTTCGATGGCTTGA
CCATCCTACTCTGGTTGTTCCCGATTATGCGTTTTCGAAGAACATTTACC
ATTACTTGAATCCCATTGCTGATCTAGCACGCACAGTTGAACATTTGCCT
GAACTCGAAATGCGAGGGAGCCGTCGAGGAGCAAAGAGGAAGGCCCCCTA
TGGAAAATGGAAATCTGAAACAAAGAACATCAACATTATCTTTCAGGGGC
TGCGACGTGTTCCTCTGGCCCATCTTTGGAAGCAGCAGCTTCTGGAACTG
ATTATAAGACAACGAATGCTGAAGAGGGGAATTAACGTGAACCTTTTCTT
TATGGAGGACTTTAGCAAACGCTCTTCGAATGTATGCCTCCGAAATGCAG
TTCTACTCGGACGAAGAGGGCATTACAATGTCTGGCCTTTTCCAAACAAA
ACTGAGGTTCCTCTTCATGGGTTTTCAGTTCCCCTGGATGCAGTTCGGTT
TAAACAAGCTGTATATGATGGGCTTGGCGTAAACGCACGTTTACCACAGT
TTCCTAAGGCACGAGGTGGATATTCTATTTCTGAACCCCCTCCGTTCACG
GTTGGATATGCTAAGCGTGATGGGAGACGCGGAAGTGATGGCTATTATCG
TGGAGGTGCCATGAGAAAGTTTTTCAGGGAAGACGAGGAATGGTTTACCG
AAATGTTAAGAAATGAAACCGAAGCTGCCGGGGCAGAATTGATCATCATA
CCACCGAAGAAGAGGGAAGGACTCCAAAAGCAGGTTACAGATATAATTGG
AGTAGGCTTCTTGATCGGTATTCATGGCGCAAACTTGGTTAATTGCATGT
TCATGCATCCTTTCGGTGTGCTAATGGAAATTTTGCCCAAGAATGTTACG
GAGGAGTGTTATATCGCTGGTGCAAATTCGGGTCTGAAATACTTGAGAAT
GGAGTGTAGCAAGGAAGTTAATTTGCTCGACAGCGGATGCCACCCGCAAG
ATTTTCTTTGCAAGGTCGATCCTCGTCAAAGAGGTGTCGATATTCGGAGA
AACCAGGATCGGAAGAGAATCCGACATCTTGTGCGACAGGGGCTTGAACA
TCTGCGATCGATAAGAACACGATTCCCGGATGGAATACATGTGAAATATA
ATCCGTATTCTACGTATTACGATGTAGTAGAATAG